Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05645

Experiment: R2A_PIPES with Cadmium chloride 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS05640 and LRK55_RS05645 are separated by 68 nucleotidesLRK55_RS05645 and LRK55_RS05650 are separated by 2 nucleotidesLRK55_RS05650 and LRK55_RS05655 are separated by 60 nucleotides LRK55_RS05640: LRK55_RS05640 - dihydrolipoamide acetyltransferase family protein, at 1,223,583 to 1,224,992 _RS05640 LRK55_RS05645: LRK55_RS05645 - DUF6348 family protein, at 1,225,061 to 1,225,705 _RS05645 LRK55_RS05650: LRK55_RS05650 - M48 family metallopeptidase, at 1,225,708 to 1,226,226 _RS05650 LRK55_RS05655: LRK55_RS05655 - VOC family protein, at 1,226,287 to 1,226,670 _RS05655 Position (kb) 1225 1226Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1224.996 kb on + strandat 1225.104 kb on + strandat 1225.104 kb on + strandat 1225.104 kb on + strandat 1225.105 kb on - strandat 1225.105 kb on - strandat 1225.105 kb on - strandat 1225.407 kb on + strand, within LRK55_RS05645at 1225.407 kb on + strand, within LRK55_RS05645at 1225.407 kb on + strand, within LRK55_RS05645at 1225.407 kb on + strand, within LRK55_RS05645at 1225.407 kb on + strand, within LRK55_RS05645at 1225.407 kb on + strand, within LRK55_RS05645at 1225.407 kb on + strand, within LRK55_RS05645at 1225.408 kb on - strand, within LRK55_RS05645at 1225.408 kb on - strand, within LRK55_RS05645at 1225.408 kb on - strand, within LRK55_RS05645at 1225.408 kb on - strand, within LRK55_RS05645at 1225.408 kb on - strand, within LRK55_RS05645at 1225.515 kb on + strand, within LRK55_RS05645at 1225.515 kb on + strand, within LRK55_RS05645at 1225.515 kb on + strand, within LRK55_RS05645at 1225.515 kb on + strand, within LRK55_RS05645at 1225.516 kb on - strand, within LRK55_RS05645at 1225.680 kb on + strandat 1225.680 kb on + strandat 1225.681 kb on - strandat 1225.681 kb on - strandat 1225.760 kb on + strand, within LRK55_RS05650at 1225.761 kb on - strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.803 kb on + strand, within LRK55_RS05650at 1225.804 kb on - strand, within LRK55_RS05650at 1225.804 kb on - strand, within LRK55_RS05650at 1225.804 kb on - strand, within LRK55_RS05650at 1225.804 kb on - strand, within LRK55_RS05650at 1225.804 kb on - strand, within LRK55_RS05650at 1225.804 kb on - strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.805 kb on + strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.806 kb on - strand, within LRK55_RS05650at 1225.821 kb on - strand, within LRK55_RS05650at 1225.844 kb on + strand, within LRK55_RS05650at 1226.018 kb on + strand, within LRK55_RS05650at 1226.018 kb on + strand, within LRK55_RS05650at 1226.018 kb on + strand, within LRK55_RS05650at 1226.019 kb on - strand, within LRK55_RS05650at 1226.078 kb on + strand, within LRK55_RS05650at 1226.078 kb on + strand, within LRK55_RS05650at 1226.078 kb on + strand, within LRK55_RS05650at 1226.079 kb on - strand, within LRK55_RS05650at 1226.079 kb on - strand, within LRK55_RS05650at 1226.084 kb on + strand, within LRK55_RS05650at 1226.085 kb on - strand, within LRK55_RS05650at 1226.085 kb on - strand, within LRK55_RS05650at 1226.210 kb on + strandat 1226.210 kb on + strandat 1226.211 kb on - strandat 1226.211 kb on - strandat 1226.233 kb on + strandat 1226.416 kb on + strand, within LRK55_RS05655at 1226.416 kb on + strand, within LRK55_RS05655at 1226.416 kb on + strand, within LRK55_RS05655at 1226.416 kb on + strand, within LRK55_RS05655

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM
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1,224,996 + -1.8
1,225,104 + +0.8
1,225,104 + -1.6
1,225,104 + +0.1
1,225,105 - -0.9
1,225,105 - +0.7
1,225,105 - -1.6
1,225,407 + LRK55_RS05645 0.54 -0.1
1,225,407 + LRK55_RS05645 0.54 +1.6
1,225,407 + LRK55_RS05645 0.54 -0.6
1,225,407 + LRK55_RS05645 0.54 +0.2
1,225,407 + LRK55_RS05645 0.54 -1.8
1,225,407 + LRK55_RS05645 0.54 -0.9
1,225,407 + LRK55_RS05645 0.54 -1.9
1,225,408 - LRK55_RS05645 0.54 -1.6
1,225,408 - LRK55_RS05645 0.54 +0.6
1,225,408 - LRK55_RS05645 0.54 -1.8
1,225,408 - LRK55_RS05645 0.54 -2.0
1,225,408 - LRK55_RS05645 0.54 -0.2
1,225,515 + LRK55_RS05645 0.70 -2.2
1,225,515 + LRK55_RS05645 0.70 -2.1
1,225,515 + LRK55_RS05645 0.70 -0.8
1,225,515 + LRK55_RS05645 0.70 +0.2
1,225,516 - LRK55_RS05645 0.71 -0.5
1,225,680 + -3.5
1,225,680 + -0.1
1,225,681 - -0.4
1,225,681 - -0.9
1,225,760 + LRK55_RS05650 0.10 +0.2
1,225,761 - LRK55_RS05650 0.10 +0.0
1,225,803 + LRK55_RS05650 0.18 -0.3
1,225,803 + LRK55_RS05650 0.18 -3.0
1,225,803 + LRK55_RS05650 0.18 -0.4
1,225,803 + LRK55_RS05650 0.18 -1.3
1,225,803 + LRK55_RS05650 0.18 -1.0
1,225,803 + LRK55_RS05650 0.18 +2.2
1,225,803 + LRK55_RS05650 0.18 +0.0
1,225,803 + LRK55_RS05650 0.18 -0.4
1,225,803 + LRK55_RS05650 0.18 +1.5
1,225,804 - LRK55_RS05650 0.18 -1.1
1,225,804 - LRK55_RS05650 0.18 -0.7
1,225,804 - LRK55_RS05650 0.18 +1.0
1,225,804 - LRK55_RS05650 0.18 +0.4
1,225,804 - LRK55_RS05650 0.18 -1.1
1,225,804 - LRK55_RS05650 0.18 +0.2
1,225,805 + LRK55_RS05650 0.19 +0.1
1,225,805 + LRK55_RS05650 0.19 +0.5
1,225,805 + LRK55_RS05650 0.19 -1.1
1,225,805 + LRK55_RS05650 0.19 +0.4
1,225,805 + LRK55_RS05650 0.19 -2.9
1,225,805 + LRK55_RS05650 0.19 +0.9
1,225,805 + LRK55_RS05650 0.19 +0.8
1,225,805 + LRK55_RS05650 0.19 -2.0
1,225,805 + LRK55_RS05650 0.19 -0.4
1,225,805 + LRK55_RS05650 0.19 -0.7
1,225,805 + LRK55_RS05650 0.19 +0.7
1,225,805 + LRK55_RS05650 0.19 +0.1
1,225,805 + LRK55_RS05650 0.19 -1.1
1,225,805 + LRK55_RS05650 0.19 +0.9
1,225,806 - LRK55_RS05650 0.19 -1.0
1,225,806 - LRK55_RS05650 0.19 +2.0
1,225,806 - LRK55_RS05650 0.19 +0.6
1,225,806 - LRK55_RS05650 0.19 -1.4
1,225,806 - LRK55_RS05650 0.19 +2.0
1,225,806 - LRK55_RS05650 0.19 -1.1
1,225,806 - LRK55_RS05650 0.19 +0.8
1,225,806 - LRK55_RS05650 0.19 -2.1
1,225,806 - LRK55_RS05650 0.19 -2.1
1,225,806 - LRK55_RS05650 0.19 +0.0
1,225,806 - LRK55_RS05650 0.19 +2.2
1,225,806 - LRK55_RS05650 0.19 +1.4
1,225,806 - LRK55_RS05650 0.19 -2.5
1,225,821 - LRK55_RS05650 0.22 +0.5
1,225,844 + LRK55_RS05650 0.26 +1.9
1,226,018 + LRK55_RS05650 0.60 -2.1
1,226,018 + LRK55_RS05650 0.60 +0.3
1,226,018 + LRK55_RS05650 0.60 +0.8
1,226,019 - LRK55_RS05650 0.60 -2.0
1,226,078 + LRK55_RS05650 0.71 -1.4
1,226,078 + LRK55_RS05650 0.71 -1.4
1,226,078 + LRK55_RS05650 0.71 -0.6
1,226,079 - LRK55_RS05650 0.71 -0.3
1,226,079 - LRK55_RS05650 0.71 +0.5
1,226,084 + LRK55_RS05650 0.72 -1.6
1,226,085 - LRK55_RS05650 0.73 -2.9
1,226,085 - LRK55_RS05650 0.73 -0.3
1,226,210 + +0.7
1,226,210 + +1.7
1,226,211 - +0.0
1,226,211 - +1.1
1,226,233 + +0.6
1,226,416 + LRK55_RS05655 0.34 +1.0
1,226,416 + LRK55_RS05655 0.34 +1.1
1,226,416 + LRK55_RS05655 0.34 -1.8
1,226,416 + LRK55_RS05655 0.34 -0.5

Or see this region's nucleotide sequence