Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05375

Experiment: R2A_PIPES with Cadmium chloride 64 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 64 uM
1,164,274	-		LRK55_RS05365	0.36	-1.2
1,164,456	-		LRK55_RS05365	0.53	+0.1
1,164,456	-		LRK55_RS05365	0.53	-1.7
1,164,533	+		LRK55_RS05365	0.60	-0.3
1,164,533	+		LRK55_RS05365	0.60	-1.2
1,164,533	+		LRK55_RS05365	0.60	-0.1
1,164,533	+		LRK55_RS05365	0.60	-2.6
1,164,533	+		LRK55_RS05365	0.60	-1.4
1,164,533	+		LRK55_RS05365	0.60	-0.7
1,164,534	-		LRK55_RS05365	0.60	-0.4
1,164,534	-		LRK55_RS05365	0.60	+1.9
1,164,599	+		LRK55_RS05365	0.66	+1.2
1,164,649	-		LRK55_RS05365	0.70	-0.4
1,164,649	-		LRK55_RS05365	0.70	-1.2
1,164,763	+		LRK55_RS05365	0.81	-0.4
1,164,763	+		LRK55_RS05365	0.81	-0.6
1,164,763	+		LRK55_RS05365	0.81	-1.4
1,164,763	+		LRK55_RS05365	0.81	+0.4
1,164,763	+		LRK55_RS05365	0.81	+1.2
1,164,763	+		LRK55_RS05365	0.81	-2.1
1,164,763	+		LRK55_RS05365	0.81	+0.2
1,164,763	+		LRK55_RS05365	0.81	-0.5
1,164,763	+		LRK55_RS05365	0.81	+3.0
1,164,763	+		LRK55_RS05365	0.81	-1.3
1,164,763	+		LRK55_RS05365	0.81	+0.7
1,164,763	+		LRK55_RS05365	0.81	-1.2
1,164,763	+		LRK55_RS05365	0.81	-0.3
1,164,763	+		LRK55_RS05365	0.81	-2.5
1,164,764	-		LRK55_RS05365	0.81	+1.8
1,164,764	-		LRK55_RS05365	0.81	-2.0
1,164,764	-		LRK55_RS05365	0.81	-2.4
1,164,764	-		LRK55_RS05365	0.81	-1.3
1,164,764	-		LRK55_RS05365	0.81	+1.7
1,164,764	-		LRK55_RS05365	0.81	-0.1
1,164,764	-		LRK55_RS05365	0.81	+1.6
1,164,764	-		LRK55_RS05365	0.81	+0.4
1,164,856	+		LRK55_RS05365	0.89	-0.1
1,164,856	+		LRK55_RS05365	0.89	-1.8
1,164,856	+		LRK55_RS05365	0.89	-2.7
1,164,856	+		LRK55_RS05365	0.89	+0.6
1,164,857	-		LRK55_RS05365	0.89	-1.6
1,164,857	-		LRK55_RS05365	0.89	+0.7
1,164,857	-		LRK55_RS05365	0.89	-1.3
1,164,857	-		LRK55_RS05365	0.89	+1.6
1,164,857	-		LRK55_RS05365	0.89	+0.4
1,164,857	-		LRK55_RS05365	0.89	+0.5
1,164,931	-				+0.7
1,164,948	-				-0.2
1,164,993	-				-3.4
1,164,993	-				-2.3
1,165,021	+				+0.3
1,165,021	+				+0.3
1,165,021	+				-0.3
1,165,037	+				+0.2
1,165,072	+		LRK55_RS05370	0.23	+1.0
1,165,072	+		LRK55_RS05370	0.23	-2.4
1,165,072	+		LRK55_RS05370	0.23	-0.5
1,165,072	+		LRK55_RS05370	0.23	-2.1
1,165,073	-		LRK55_RS05370	0.24	+0.1
1,165,073	-		LRK55_RS05370	0.24	+0.2
1,165,073	-		LRK55_RS05370	0.24	+0.4
1,165,152	+		LRK55_RS05370	0.85	-0.5
1,165,153	-		LRK55_RS05370	0.86	-0.2
1,165,158	-				+0.2
1,165,173	+				+0.2
1,165,224	+				-0.3
1,165,224	+				-0.6
1,165,224	+				-1.8
1,165,225	-				+0.4
1,165,225	-				+0.3
1,165,225	-				+0.5
1,165,280	+				-2.3
1,165,282	+				-2.4
1,165,282	+				-2.4
1,165,282	+				-1.3
1,165,283	-				+1.3
1,165,283	-				+2.8
1,165,283	-				-0.1
1,165,283	-				-1.8
1,165,283	-				-3.0
1,165,283	-				-1.5
1,165,298	-		LRK55_RS05375	0.11	+0.7
1,165,331	+		LRK55_RS05375	0.16	-2.8
1,165,331	+		LRK55_RS05375	0.16	-0.7
1,165,356	+		LRK55_RS05375	0.20	-0.3
1,165,356	+		LRK55_RS05375	0.20	-0.1
1,165,357	-		LRK55_RS05375	0.20	-0.7
1,165,357	-		LRK55_RS05375	0.20	+0.4
1,165,397	+		LRK55_RS05375	0.27	-0.2
1,165,398	-		LRK55_RS05375	0.27	-1.3
1,165,398	-		LRK55_RS05375	0.27	-0.8
1,165,409	-		LRK55_RS05375	0.29	+0.7
1,165,409	-		LRK55_RS05375	0.29	-1.6
1,165,456	+		LRK55_RS05375	0.36	-0.8
1,165,456	+		LRK55_RS05375	0.36	-3.0
1,165,457	-		LRK55_RS05375	0.37	+0.5
1,165,459	+		LRK55_RS05375	0.37	-2.5
1,165,460	-		LRK55_RS05375	0.37	-0.1
1,165,460	-		LRK55_RS05375	0.37	+0.7
1,165,487	-		LRK55_RS05375	0.41	+0.7
1,165,504	+		LRK55_RS05375	0.44	+0.6
1,165,504	+		LRK55_RS05375	0.44	-1.4
1,165,505	-		LRK55_RS05375	0.44	+0.4
1,165,536	-		LRK55_RS05375	0.49	-0.5
1,165,550	-		LRK55_RS05375	0.52	+0.9
1,165,583	-		LRK55_RS05375	0.57	+0.0
1,165,587	+		LRK55_RS05375	0.58	-0.6
1,165,587	+		LRK55_RS05375	0.58	-1.4
1,165,587	+		LRK55_RS05375	0.58	-0.8
1,165,587	+		LRK55_RS05375	0.58	+0.7
1,165,587	+		LRK55_RS05375	0.58	-0.7
1,165,588	-		LRK55_RS05375	0.58	-0.3
1,165,588	-		LRK55_RS05375	0.58	-2.0
1,165,588	-		LRK55_RS05375	0.58	-1.4
1,165,588	-		LRK55_RS05375	0.58	-0.4
1,165,601	+		LRK55_RS05375	0.60	-0.5
1,165,601	+		LRK55_RS05375	0.60	-1.7
1,165,601	+		LRK55_RS05375	0.60	-0.3
1,165,602	-		LRK55_RS05375	0.60	-2.1
1,165,669	+		LRK55_RS05375	0.71	-0.8
1,165,669	+		LRK55_RS05375	0.71	-0.6
1,165,669	+		LRK55_RS05375	0.71	-2.7
1,165,670	-		LRK55_RS05375	0.71	+0.5
1,165,705	+		LRK55_RS05375	0.77	-0.5
1,165,705	+		LRK55_RS05375	0.77	-1.1
1,165,705	+		LRK55_RS05375	0.77	-0.8
1,165,705	+		LRK55_RS05375	0.77	-1.4
1,165,706	-		LRK55_RS05375	0.77	+1.1
1,165,706	-		LRK55_RS05375	0.77	-0.5
1,165,706	-		LRK55_RS05375	0.77	-1.1
1,165,706	-		LRK55_RS05375	0.77	-1.2
1,165,728	-		LRK55_RS05375	0.81	-1.6
1,165,744	+		LRK55_RS05375	0.83	-0.5
1,165,744	+		LRK55_RS05375	0.83	-0.7
1,165,745	-		LRK55_RS05375	0.83	-1.7
1,165,757	-		LRK55_RS05375	0.85	-2.9
1,165,780	+		LRK55_RS05375	0.89	-0.5
1,165,780	+		LRK55_RS05375	0.89	-0.0
1,165,781	-		LRK55_RS05375	0.89	+0.1
1,165,794	-				-1.0
1,165,859	+				-0.2
1,165,864	-				-1.1
1,165,873	-				+1.7
1,165,895	+				+0.5
1,165,896	-				-2.4
1,165,900	+				-0.8
1,165,900	+				-0.8
1,165,923	+				-0.1
1,165,924	-				-0.8
1,165,924	-				-0.8
1,165,946	-				-2.7
1,165,961	+				-0.8
1,165,996	+				-3.5
1,165,996	+				-0.2
1,165,997	-				-0.2
1,165,997	-				+0.5
1,166,005	+				-1.7
1,166,005	+				-1.7
1,166,006	-				+0.9
1,166,006	-				-0.3
1,166,006	-				-0.6
1,166,006	-				-2.4
1,166,042	+				-3.2
1,166,042	+				+0.1
1,166,042	+				-2.9
1,166,042	+				+1.4
1,166,043	-				-1.1
1,166,043	-				-2.0
1,166,043	-				-0.7
1,166,043	-				-3.3
1,166,043	-				-1.6
1,166,046	+				-1.0
1,166,046	+				+1.0
1,166,046	+				-0.8
1,166,046	+				+1.7
1,166,047	-				-0.2
1,166,047	-				-0.0
1,166,047	-				-0.6
1,166,047	-				+1.0
1,166,047	-				-2.7
1,166,047	-				+0.3
1,166,047	-				-2.4
1,166,049	+				-2.2
1,166,075	+				+1.8
1,166,088	+				-3.1
1,166,089	-				-2.1
1,166,096	+				-0.4
1,166,202	-		LRK55_RS05380	0.12	-1.6
1,166,228	+		LRK55_RS05380	0.15	-3.1
1,166,229	-		LRK55_RS05380	0.15	-3.6
1,166,232	+		LRK55_RS05380	0.16	-1.1
1,166,244	-		LRK55_RS05380	0.17	+0.8
1,166,322	-		LRK55_RS05380	0.25	-2.7
1,166,340	+		LRK55_RS05380	0.27	-3.7
1,166,340	+		LRK55_RS05380	0.27	-3.1
1,166,341	-		LRK55_RS05380	0.27	-1.7
1,166,380	+		LRK55_RS05380	0.31	-1.4
1,166,382	+		LRK55_RS05380	0.32	-2.9
1,166,382	+		LRK55_RS05380	0.32	-0.4
1,166,383	-		LRK55_RS05380	0.32	-3.6
1,166,383	-		LRK55_RS05380	0.32	-4.0
1,166,389	-		LRK55_RS05380	0.32	-3.1
1,166,457	-		LRK55_RS05380	0.40	-4.0
1,166,543	+		LRK55_RS05380	0.49	-4.9
1,166,544	-		LRK55_RS05380	0.49	-2.2
1,166,544	-		LRK55_RS05380	0.49	-2.6
1,166,544	-		LRK55_RS05380	0.49	-2.3
1,166,544	-		LRK55_RS05380	0.49	-3.8
1,166,553	+		LRK55_RS05380	0.50	-2.6
1,166,553	+		LRK55_RS05380	0.50	-4.0
1,166,553	+		LRK55_RS05380	0.50	-3.0
1,166,553	+		LRK55_RS05380	0.50	-3.7
1,166,553	+		LRK55_RS05380	0.50	-3.5
1,166,554	-		LRK55_RS05380	0.50	-1.4
1,166,554	-		LRK55_RS05380	0.50	-2.9
1,166,554	-		LRK55_RS05380	0.50	-2.5
1,166,588	+		LRK55_RS05380	0.54	-3.8
1,166,589	-		LRK55_RS05380	0.54	-3.0
1,166,591	-		LRK55_RS05380	0.54	-2.1
1,166,595	+		LRK55_RS05380	0.54	-2.2
1,166,596	-		LRK55_RS05380	0.55	-2.1
1,166,596	-		LRK55_RS05380	0.55	-3.2
1,166,601	-		LRK55_RS05380	0.55	-5.2
1,166,655	+		LRK55_RS05380	0.61	-3.5
1,166,655	+		LRK55_RS05380	0.61	-2.9
1,166,706	-		LRK55_RS05380	0.66	-3.3
1,166,711	-		LRK55_RS05380	0.67	-2.5
1,166,726	+		LRK55_RS05380	0.68	-1.4
1,166,727	-		LRK55_RS05380	0.69	-3.0
1,166,727	-		LRK55_RS05380	0.69	-1.1
1,166,727	-		LRK55_RS05380	0.69	-2.1
1,166,757	+		LRK55_RS05380	0.72	-3.7
1,166,757	+		LRK55_RS05380	0.72	-2.1
1,166,757	+		LRK55_RS05380	0.72	-2.6
1,166,758	-		LRK55_RS05380	0.72	-3.3
1,166,786	+		LRK55_RS05380	0.75	-0.8
1,166,786	+		LRK55_RS05380	0.75	-3.7
1,166,786	+		LRK55_RS05380	0.75	-1.8
1,166,786	+		LRK55_RS05380	0.75	-2.8