Experiment: R2A_PIPES with Cadmium chloride 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02785 and LRK55_RS02790 are separated by 47 nucleotides LRK55_RS02790 and LRK55_RS02795 are separated by 140 nucleotides LRK55_RS02795 and LRK55_RS02800 overlap by 27 nucleotides
LRK55_RS02785: LRK55_RS02785 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 602,764 to 604,167
_RS02785
LRK55_RS02790: LRK55_RS02790 - MtnX-like HAD-IB family phosphatase, at 604,215 to 604,916
_RS02790
LRK55_RS02795: LRK55_RS02795 - MipA/OmpV family protein, at 605,057 to 605,839
_RS02795
LRK55_RS02800: LRK55_RS02800 - type II CAAX endopeptidase family protein, at 605,813 to 606,586
_RS02800
Position (kb) 604
605 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 603.441 kb on - strand, within LRK55_RS02785 at 603.441 kb on - strand, within LRK55_RS02785 at 603.470 kb on + strand, within LRK55_RS02785 at 603.470 kb on + strand, within LRK55_RS02785 at 603.470 kb on + strand, within LRK55_RS02785 at 603.471 kb on - strand, within LRK55_RS02785 at 603.471 kb on - strand, within LRK55_RS02785 at 603.482 kb on + strand, within LRK55_RS02785 at 603.483 kb on - strand, within LRK55_RS02785 at 603.521 kb on + strand, within LRK55_RS02785 at 603.521 kb on + strand, within LRK55_RS02785 at 603.521 kb on + strand, within LRK55_RS02785 at 603.521 kb on + strand, within LRK55_RS02785 at 603.522 kb on - strand, within LRK55_RS02785 at 603.522 kb on - strand, within LRK55_RS02785 at 603.522 kb on - strand, within LRK55_RS02785 at 603.522 kb on - strand, within LRK55_RS02785 at 603.570 kb on - strand, within LRK55_RS02785 at 603.570 kb on - strand, within LRK55_RS02785 at 603.752 kb on + strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.753 kb on - strand, within LRK55_RS02785 at 603.890 kb on + strand, within LRK55_RS02785 at 603.891 kb on - strand, within LRK55_RS02785 at 603.891 kb on - strand, within LRK55_RS02785 at 603.981 kb on - strand, within LRK55_RS02785 at 604.028 kb on + strand at 604.028 kb on + strand at 604.028 kb on + strand at 604.028 kb on + strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.029 kb on - strand at 604.070 kb on + strand at 604.070 kb on + strand at 604.071 kb on - strand at 604.071 kb on - strand at 604.071 kb on - strand at 604.071 kb on - strand at 604.071 kb on - strand at 604.071 kb on - strand at 604.071 kb on - strand at 604.071 kb on - strand at 604.095 kb on + strand at 604.097 kb on + strand at 604.097 kb on + strand at 604.097 kb on + strand at 604.097 kb on + strand at 604.098 kb on - strand at 604.098 kb on - strand at 604.098 kb on - strand at 604.098 kb on - strand at 604.098 kb on - strand at 604.098 kb on - strand at 604.098 kb on - strand at 604.098 kb on - strand at 604.322 kb on - strand, within LRK55_RS02790 at 604.322 kb on - strand, within LRK55_RS02790 at 604.322 kb on - strand, within LRK55_RS02790 at 604.322 kb on - strand, within LRK55_RS02790 at 604.322 kb on - strand, within LRK55_RS02790 at 604.322 kb on - strand, within LRK55_RS02790 at 604.322 kb on - strand, within LRK55_RS02790 at 604.322 kb on - strand, within LRK55_RS02790 at 604.613 kb on - strand, within LRK55_RS02790 at 604.613 kb on - strand, within LRK55_RS02790 at 604.613 kb on - strand, within LRK55_RS02790 at 605.004 kb on + strand at 605.004 kb on + strand at 605.004 kb on + strand at 605.043 kb on + strand at 605.043 kb on + strand at 605.043 kb on + strand at 605.043 kb on + strand at 605.044 kb on - strand at 605.044 kb on - strand at 605.231 kb on + strand, within LRK55_RS02795 at 605.231 kb on + strand, within LRK55_RS02795 at 605.231 kb on + strand, within LRK55_RS02795 at 605.231 kb on + strand, within LRK55_RS02795 at 605.232 kb on - strand, within LRK55_RS02795 at 605.232 kb on - strand, within LRK55_RS02795 at 605.336 kb on + strand, within LRK55_RS02795 at 605.337 kb on - strand, within LRK55_RS02795 at 605.337 kb on - strand, within LRK55_RS02795 at 605.420 kb on + strand, within LRK55_RS02795 at 605.495 kb on + strand, within LRK55_RS02795 at 605.495 kb on + strand, within LRK55_RS02795 at 605.495 kb on + strand, within LRK55_RS02795 at 605.507 kb on + strand, within LRK55_RS02795 at 605.507 kb on + strand, within LRK55_RS02795 at 605.508 kb on - strand, within LRK55_RS02795 at 605.508 kb on - strand, within LRK55_RS02795 at 605.508 kb on - strand, within LRK55_RS02795 at 605.508 kb on - strand, within LRK55_RS02795 at 605.508 kb on - strand, within LRK55_RS02795 at 605.508 kb on - strand, within LRK55_RS02795 at 605.684 kb on + strand, within LRK55_RS02795 at 605.684 kb on + strand, within LRK55_RS02795 at 605.684 kb on + strand, within LRK55_RS02795 at 605.685 kb on - strand, within LRK55_RS02795 at 605.685 kb on - strand, within LRK55_RS02795 at 605.685 kb on - strand, within LRK55_RS02795 at 605.738 kb on + strand, within LRK55_RS02795 at 605.738 kb on + strand, within LRK55_RS02795 at 605.739 kb on - strand, within LRK55_RS02795 at 605.739 kb on - strand, within LRK55_RS02795 at 605.828 kb on + strand at 605.828 kb on + strand at 605.828 kb on + strand at 605.828 kb on + strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.868 kb on - strand at 605.868 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM remove 603,441 - LRK55_RS02785 0.48 -1.1 603,441 - LRK55_RS02785 0.48 -2.7 603,470 + LRK55_RS02785 0.50 -3.3 603,470 + LRK55_RS02785 0.50 -1.5 603,470 + LRK55_RS02785 0.50 -2.0 603,471 - LRK55_RS02785 0.50 -2.3 603,471 - LRK55_RS02785 0.50 -1.3 603,482 + LRK55_RS02785 0.51 -1.1 603,483 - LRK55_RS02785 0.51 -1.6 603,521 + LRK55_RS02785 0.54 -2.4 603,521 + LRK55_RS02785 0.54 -1.4 603,521 + LRK55_RS02785 0.54 -4.5 603,521 + LRK55_RS02785 0.54 -1.6 603,522 - LRK55_RS02785 0.54 -4.1 603,522 - LRK55_RS02785 0.54 -0.0 603,522 - LRK55_RS02785 0.54 -2.1 603,522 - LRK55_RS02785 0.54 -1.6 603,570 - LRK55_RS02785 0.57 -2.0 603,570 - LRK55_RS02785 0.57 -2.0 603,752 + LRK55_RS02785 0.70 -0.4 603,753 - LRK55_RS02785 0.70 -3.1 603,753 - LRK55_RS02785 0.70 -3.5 603,753 - LRK55_RS02785 0.70 -1.1 603,753 - LRK55_RS02785 0.70 -1.6 603,753 - LRK55_RS02785 0.70 -3.3 603,753 - LRK55_RS02785 0.70 -4.4 603,753 - LRK55_RS02785 0.70 -1.8 603,753 - LRK55_RS02785 0.70 -3.4 603,890 + LRK55_RS02785 0.80 -2.3 603,891 - LRK55_RS02785 0.80 -1.6 603,891 - LRK55_RS02785 0.80 +1.2 603,981 - LRK55_RS02785 0.87 -0.7 604,028 + -1.4 604,028 + -2.1 604,028 + -1.4 604,028 + -2.0 604,029 - -0.8 604,029 - -1.4 604,029 - -1.7 604,029 - -2.3 604,029 - -3.5 604,029 - -2.4 604,029 - -1.4 604,029 - -3.4 604,029 - -3.1 604,029 - -3.3 604,029 - -1.6 604,029 - -4.3 604,070 + -2.5 604,070 + -2.5 604,071 - -1.1 604,071 - +0.4 604,071 - -1.7 604,071 - -1.8 604,071 - -3.5 604,071 - -3.7 604,071 - -3.2 604,071 - -0.8 604,095 + -2.1 604,097 + -2.4 604,097 + -1.6 604,097 + -2.8 604,097 + -3.1 604,098 - -2.3 604,098 - -3.1 604,098 - -1.9 604,098 - -4.1 604,098 - -2.0 604,098 - -2.0 604,098 - -2.8 604,098 - -3.8 604,322 - LRK55_RS02790 0.15 -2.0 604,322 - LRK55_RS02790 0.15 +0.2 604,322 - LRK55_RS02790 0.15 -1.6 604,322 - LRK55_RS02790 0.15 -2.3 604,322 - LRK55_RS02790 0.15 -3.1 604,322 - LRK55_RS02790 0.15 -0.8 604,322 - LRK55_RS02790 0.15 -2.8 604,322 - LRK55_RS02790 0.15 -1.1 604,613 - LRK55_RS02790 0.57 -3.8 604,613 - LRK55_RS02790 0.57 -1.1 604,613 - LRK55_RS02790 0.57 -2.1 605,004 + +1.0 605,004 + +0.2 605,004 + -0.1 605,043 + +1.4 605,043 + +0.3 605,043 + +0.5 605,043 + +1.2 605,044 - +0.6 605,044 - +1.0 605,231 + LRK55_RS02795 0.22 +0.3 605,231 + LRK55_RS02795 0.22 +0.2 605,231 + LRK55_RS02795 0.22 -1.4 605,231 + LRK55_RS02795 0.22 +1.2 605,232 - LRK55_RS02795 0.22 +1.5 605,232 - LRK55_RS02795 0.22 +0.5 605,336 + LRK55_RS02795 0.36 +1.0 605,337 - LRK55_RS02795 0.36 +0.9 605,337 - LRK55_RS02795 0.36 +0.9 605,420 + LRK55_RS02795 0.46 -0.7 605,495 + LRK55_RS02795 0.56 -0.6 605,495 + LRK55_RS02795 0.56 -0.0 605,495 + LRK55_RS02795 0.56 +0.8 605,507 + LRK55_RS02795 0.57 -0.0 605,507 + LRK55_RS02795 0.57 +1.4 605,508 - LRK55_RS02795 0.58 +0.5 605,508 - LRK55_RS02795 0.58 +0.1 605,508 - LRK55_RS02795 0.58 -1.7 605,508 - LRK55_RS02795 0.58 -3.1 605,508 - LRK55_RS02795 0.58 +1.7 605,508 - LRK55_RS02795 0.58 +0.6 605,684 + LRK55_RS02795 0.80 +1.1 605,684 + LRK55_RS02795 0.80 -0.1 605,684 + LRK55_RS02795 0.80 +1.8 605,685 - LRK55_RS02795 0.80 -0.1 605,685 - LRK55_RS02795 0.80 -0.4 605,685 - LRK55_RS02795 0.80 -2.1 605,738 + LRK55_RS02795 0.87 +0.8 605,738 + LRK55_RS02795 0.87 +0.6 605,739 - LRK55_RS02795 0.87 +1.0 605,739 - LRK55_RS02795 0.87 -2.2 605,828 + -1.1 605,828 + +1.5 605,828 + -1.9 605,828 + +0.2 605,829 - +1.4 605,829 - -1.3 605,829 - +1.6 605,829 - -0.6 605,829 - -0.6 605,829 - -0.7 605,868 - +0.6 605,868 - -0.6
Or see this region's nucleotide sequence