Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02710

Experiment: R2A_PIPES with Cadmium chloride 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02705 and LRK55_RS02710 are separated by 136 nucleotidesLRK55_RS02710 and LRK55_RS02715 are separated by 5 nucleotidesLRK55_RS02715 and LRK55_RS02720 overlap by 4 nucleotides LRK55_RS02705: LRK55_RS02705 - efflux transporter outer membrane subunit, at 584,771 to 586,225 _RS02705 LRK55_RS02710: LRK55_RS02710 - ABC transporter permease, at 586,362 to 587,492 _RS02710 LRK55_RS02715: LRK55_RS02715 - ABC transporter ATP-binding protein, at 587,498 to 588,250 _RS02715 LRK55_RS02720: LRK55_RS02720 - HlyD family efflux transporter periplasmic adaptor subunit, at 588,247 to 589,218 _RS02720 Position (kb) 586 587 588Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 585.879 kb on - strand, within LRK55_RS02705at 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.121 kb on + strandat 586.122 kb on - strandat 586.122 kb on - strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.392 kb on + strandat 586.393 kb on - strandat 586.393 kb on - strandat 586.478 kb on + strand, within LRK55_RS02710at 586.478 kb on + strand, within LRK55_RS02710at 586.479 kb on - strand, within LRK55_RS02710at 586.479 kb on - strand, within LRK55_RS02710at 586.490 kb on + strand, within LRK55_RS02710at 586.490 kb on + strand, within LRK55_RS02710at 586.491 kb on - strand, within LRK55_RS02710at 586.491 kb on - strand, within LRK55_RS02710at 586.491 kb on - strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.500 kb on + strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.501 kb on - strand, within LRK55_RS02710at 586.536 kb on + strand, within LRK55_RS02710at 586.632 kb on + strand, within LRK55_RS02710at 586.632 kb on + strand, within LRK55_RS02710at 586.633 kb on - strand, within LRK55_RS02710at 586.633 kb on - strand, within LRK55_RS02710at 586.633 kb on - strand, within LRK55_RS02710at 586.633 kb on - strand, within LRK55_RS02710at 586.633 kb on - strand, within LRK55_RS02710at 586.971 kb on + strand, within LRK55_RS02710at 586.971 kb on + strand, within LRK55_RS02710at 586.971 kb on + strand, within LRK55_RS02710at 586.972 kb on - strand, within LRK55_RS02710at 586.972 kb on - strand, within LRK55_RS02710at 587.026 kb on + strand, within LRK55_RS02710at 587.052 kb on + strand, within LRK55_RS02710at 587.052 kb on + strand, within LRK55_RS02710at 587.053 kb on - strand, within LRK55_RS02710at 587.220 kb on + strand, within LRK55_RS02710at 587.220 kb on + strand, within LRK55_RS02710at 587.220 kb on + strand, within LRK55_RS02710at 587.221 kb on - strand, within LRK55_RS02710at 587.221 kb on - strand, within LRK55_RS02710at 587.221 kb on - strand, within LRK55_RS02710at 587.221 kb on - strand, within LRK55_RS02710at 587.491 kb on - strandat 588.190 kb on + strandat 588.400 kb on + strand, within LRK55_RS02720at 588.400 kb on + strand, within LRK55_RS02720at 588.400 kb on + strand, within LRK55_RS02720at 588.401 kb on - strand, within LRK55_RS02720at 588.401 kb on - strand, within LRK55_RS02720

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM
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585,879 - LRK55_RS02705 0.76 -3.3
586,121 + +1.5
586,121 + -4.0
586,121 + -3.1
586,121 + -3.7
586,121 + -1.8
586,121 + -3.5
586,121 + -4.0
586,121 + -0.7
586,121 + -2.1
586,121 + -1.6
586,121 + -1.6
586,122 - -0.1
586,122 - -2.8
586,392 + -1.5
586,392 + -0.2
586,392 + -2.0
586,392 + -4.2
586,392 + -2.1
586,392 + -2.5
586,392 + +1.2
586,392 + -3.4
586,392 + -2.0
586,392 + -3.0
586,392 + -4.3
586,392 + -2.0
586,393 - -1.8
586,393 - -3.7
586,478 + LRK55_RS02710 0.10 -3.2
586,478 + LRK55_RS02710 0.10 +1.2
586,479 - LRK55_RS02710 0.10 -3.6
586,479 - LRK55_RS02710 0.10 -2.1
586,490 + LRK55_RS02710 0.11 -1.0
586,490 + LRK55_RS02710 0.11 -1.8
586,491 - LRK55_RS02710 0.11 -2.5
586,491 - LRK55_RS02710 0.11 -4.8
586,491 - LRK55_RS02710 0.11 +0.9
586,500 + LRK55_RS02710 0.12 -2.2
586,500 + LRK55_RS02710 0.12 -0.9
586,500 + LRK55_RS02710 0.12 -1.8
586,500 + LRK55_RS02710 0.12 -1.6
586,500 + LRK55_RS02710 0.12 -4.9
586,500 + LRK55_RS02710 0.12 -3.8
586,500 + LRK55_RS02710 0.12 -0.4
586,500 + LRK55_RS02710 0.12 -3.0
586,500 + LRK55_RS02710 0.12 -1.8
586,500 + LRK55_RS02710 0.12 -1.4
586,500 + LRK55_RS02710 0.12 -2.0
586,500 + LRK55_RS02710 0.12 -2.8
586,501 - LRK55_RS02710 0.12 -3.0
586,501 - LRK55_RS02710 0.12 -0.8
586,501 - LRK55_RS02710 0.12 -3.8
586,501 - LRK55_RS02710 0.12 -1.8
586,501 - LRK55_RS02710 0.12 -1.6
586,501 - LRK55_RS02710 0.12 -3.4
586,501 - LRK55_RS02710 0.12 -0.8
586,501 - LRK55_RS02710 0.12 -4.6
586,501 - LRK55_RS02710 0.12 -3.3
586,501 - LRK55_RS02710 0.12 -3.3
586,501 - LRK55_RS02710 0.12 -1.1
586,501 - LRK55_RS02710 0.12 -1.4
586,501 - LRK55_RS02710 0.12 -1.4
586,536 + LRK55_RS02710 0.15 -2.6
586,632 + LRK55_RS02710 0.24 -2.5
586,632 + LRK55_RS02710 0.24 -2.0
586,633 - LRK55_RS02710 0.24 -2.4
586,633 - LRK55_RS02710 0.24 -2.3
586,633 - LRK55_RS02710 0.24 -2.0
586,633 - LRK55_RS02710 0.24 -2.5
586,633 - LRK55_RS02710 0.24 -2.0
586,971 + LRK55_RS02710 0.54 -0.8
586,971 + LRK55_RS02710 0.54 -3.6
586,971 + LRK55_RS02710 0.54 -1.8
586,972 - LRK55_RS02710 0.54 -2.2
586,972 - LRK55_RS02710 0.54 -3.5
587,026 + LRK55_RS02710 0.59 -3.4
587,052 + LRK55_RS02710 0.61 -2.9
587,052 + LRK55_RS02710 0.61 -1.6
587,053 - LRK55_RS02710 0.61 -0.4
587,220 + LRK55_RS02710 0.76 -1.6
587,220 + LRK55_RS02710 0.76 -1.1
587,220 + LRK55_RS02710 0.76 -3.5
587,221 - LRK55_RS02710 0.76 -3.6
587,221 - LRK55_RS02710 0.76 -1.8
587,221 - LRK55_RS02710 0.76 -1.3
587,221 - LRK55_RS02710 0.76 -2.1
587,491 - -2.1
588,190 + -3.9
588,400 + LRK55_RS02720 0.16 -2.7
588,400 + LRK55_RS02720 0.16 -1.4
588,400 + LRK55_RS02720 0.16 -2.7
588,401 - LRK55_RS02720 0.16 -3.6
588,401 - LRK55_RS02720 0.16 -2.8

Or see this region's nucleotide sequence