Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02480

Experiment: R2A_PIPES with Cadmium chloride 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02470 and LRK55_RS02475 are separated by 21 nucleotidesLRK55_RS02475 and LRK55_RS02480 are separated by 149 nucleotidesLRK55_RS02480 and LRK55_RS02485 are separated by 1 nucleotides LRK55_RS02470: LRK55_RS02470 - DUF1345 domain-containing protein, at 530,882 to 531,574 _RS02470 LRK55_RS02475: LRK55_RS02475 - GNAT family N-acetyltransferase, at 531,596 to 531,871 _RS02475 LRK55_RS02480: LRK55_RS02480 - OsmC family protein, at 532,021 to 532,446 _RS02480 LRK55_RS02485: LRK55_RS02485 - 3-deoxy-7-phosphoheptulonate synthase, at 532,448 to 533,542 _RS02485 Position (kb) 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 531.042 kb on + strand, within LRK55_RS02470at 531.042 kb on + strand, within LRK55_RS02470at 531.043 kb on - strand, within LRK55_RS02470at 531.043 kb on - strand, within LRK55_RS02470at 531.058 kb on - strand, within LRK55_RS02470at 531.058 kb on - strand, within LRK55_RS02470at 531.058 kb on - strand, within LRK55_RS02470at 531.116 kb on + strand, within LRK55_RS02470at 531.118 kb on - strand, within LRK55_RS02470at 531.118 kb on - strand, within LRK55_RS02470at 531.120 kb on + strand, within LRK55_RS02470at 531.121 kb on - strand, within LRK55_RS02470at 531.132 kb on + strand, within LRK55_RS02470at 531.132 kb on + strand, within LRK55_RS02470at 531.132 kb on + strand, within LRK55_RS02470at 531.132 kb on + strand, within LRK55_RS02470at 531.133 kb on - strand, within LRK55_RS02470at 531.615 kb on + strandat 531.615 kb on + strandat 531.615 kb on + strandat 531.616 kb on - strandat 531.648 kb on + strand, within LRK55_RS02475at 531.648 kb on + strand, within LRK55_RS02475at 531.648 kb on + strand, within LRK55_RS02475at 531.648 kb on + strand, within LRK55_RS02475at 531.648 kb on + strand, within LRK55_RS02475at 531.648 kb on + strand, within LRK55_RS02475at 531.648 kb on + strand, within LRK55_RS02475at 531.648 kb on + strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.649 kb on - strand, within LRK55_RS02475at 531.792 kb on + strand, within LRK55_RS02475at 531.793 kb on - strand, within LRK55_RS02475at 531.793 kb on - strand, within LRK55_RS02475at 531.906 kb on + strandat 531.906 kb on + strandat 531.906 kb on + strandat 531.906 kb on + strandat 531.906 kb on + strandat 531.906 kb on + strandat 531.906 kb on + strandat 531.906 kb on + strandat 531.906 kb on + strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 531.907 kb on - strandat 532.192 kb on + strand, within LRK55_RS02480at 532.192 kb on + strand, within LRK55_RS02480at 532.192 kb on + strand, within LRK55_RS02480at 532.193 kb on - strand, within LRK55_RS02480at 532.193 kb on - strand, within LRK55_RS02480at 532.193 kb on - strand, within LRK55_RS02480at 532.824 kb on + strand, within LRK55_RS02485at 532.825 kb on - strand, within LRK55_RS02485at 533.091 kb on + strand, within LRK55_RS02485at 533.091 kb on + strand, within LRK55_RS02485at 533.091 kb on + strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.092 kb on - strand, within LRK55_RS02485at 533.265 kb on + strand, within LRK55_RS02485at 533.265 kb on + strand, within LRK55_RS02485at 533.266 kb on - strand, within LRK55_RS02485at 533.266 kb on - strand, within LRK55_RS02485at 533.266 kb on - strand, within LRK55_RS02485at 533.266 kb on - strand, within LRK55_RS02485at 533.331 kb on + strand, within LRK55_RS02485at 533.331 kb on + strand, within LRK55_RS02485at 533.332 kb on - strand, within LRK55_RS02485at 533.332 kb on - strand, within LRK55_RS02485

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM
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531,042 + LRK55_RS02470 0.23 +0.0
531,042 + LRK55_RS02470 0.23 -1.0
531,043 - LRK55_RS02470 0.23 -0.5
531,043 - LRK55_RS02470 0.23 +0.9
531,058 - LRK55_RS02470 0.25 -0.3
531,058 - LRK55_RS02470 0.25 -0.2
531,058 - LRK55_RS02470 0.25 -2.2
531,116 + LRK55_RS02470 0.34 -0.4
531,118 - LRK55_RS02470 0.34 +1.1
531,118 - LRK55_RS02470 0.34 +1.7
531,120 + LRK55_RS02470 0.34 -0.2
531,121 - LRK55_RS02470 0.34 -1.5
531,132 + LRK55_RS02470 0.36 -0.1
531,132 + LRK55_RS02470 0.36 +1.5
531,132 + LRK55_RS02470 0.36 +1.1
531,132 + LRK55_RS02470 0.36 -1.2
531,133 - LRK55_RS02470 0.36 +0.8
531,615 + -0.6
531,615 + -2.9
531,615 + +0.5
531,616 - -0.1
531,648 + LRK55_RS02475 0.19 -1.9
531,648 + LRK55_RS02475 0.19 +0.1
531,648 + LRK55_RS02475 0.19 +0.1
531,648 + LRK55_RS02475 0.19 +0.2
531,648 + LRK55_RS02475 0.19 -0.4
531,648 + LRK55_RS02475 0.19 -0.5
531,648 + LRK55_RS02475 0.19 -0.5
531,648 + LRK55_RS02475 0.19 -0.3
531,649 - LRK55_RS02475 0.19 +0.4
531,649 - LRK55_RS02475 0.19 +2.5
531,649 - LRK55_RS02475 0.19 -1.2
531,649 - LRK55_RS02475 0.19 -0.9
531,649 - LRK55_RS02475 0.19 -2.0
531,649 - LRK55_RS02475 0.19 -0.3
531,649 - LRK55_RS02475 0.19 +0.2
531,649 - LRK55_RS02475 0.19 +0.9
531,792 + LRK55_RS02475 0.71 -0.6
531,793 - LRK55_RS02475 0.71 -1.1
531,793 - LRK55_RS02475 0.71 +0.4
531,906 + -0.2
531,906 + -0.2
531,906 + +0.1
531,906 + -0.0
531,906 + -0.3
531,906 + +1.1
531,906 + -0.9
531,906 + -2.0
531,906 + -0.0
531,907 - +2.3
531,907 - -0.9
531,907 - -3.0
531,907 - -0.2
531,907 - -2.3
531,907 - -1.5
531,907 - -0.4
531,907 - +0.9
531,907 - -0.5
531,907 - -1.2
531,907 - -0.6
532,192 + LRK55_RS02480 0.40 +0.1
532,192 + LRK55_RS02480 0.40 -0.5
532,192 + LRK55_RS02480 0.40 +0.0
532,193 - LRK55_RS02480 0.40 -0.1
532,193 - LRK55_RS02480 0.40 +0.9
532,193 - LRK55_RS02480 0.40 +0.5
532,824 + LRK55_RS02485 0.34 -1.5
532,825 - LRK55_RS02485 0.34 +0.5
533,091 + LRK55_RS02485 0.59 -2.2
533,091 + LRK55_RS02485 0.59 +1.3
533,091 + LRK55_RS02485 0.59 +0.1
533,092 - LRK55_RS02485 0.59 +0.4
533,092 - LRK55_RS02485 0.59 +0.4
533,092 - LRK55_RS02485 0.59 +1.1
533,092 - LRK55_RS02485 0.59 +2.1
533,092 - LRK55_RS02485 0.59 +0.1
533,092 - LRK55_RS02485 0.59 -2.0
533,092 - LRK55_RS02485 0.59 +0.6
533,092 - LRK55_RS02485 0.59 -1.8
533,092 - LRK55_RS02485 0.59 -0.9
533,092 - LRK55_RS02485 0.59 -1.1
533,092 - LRK55_RS02485 0.59 -0.4
533,092 - LRK55_RS02485 0.59 -1.5
533,092 - LRK55_RS02485 0.59 +0.6
533,092 - LRK55_RS02485 0.59 -2.3
533,265 + LRK55_RS02485 0.75 +0.1
533,265 + LRK55_RS02485 0.75 +1.7
533,266 - LRK55_RS02485 0.75 +1.2
533,266 - LRK55_RS02485 0.75 +1.4
533,266 - LRK55_RS02485 0.75 -1.7
533,266 - LRK55_RS02485 0.75 -0.6
533,331 + LRK55_RS02485 0.81 +0.7
533,331 + LRK55_RS02485 0.81 +0.7
533,332 - LRK55_RS02485 0.81 -2.0
533,332 - LRK55_RS02485 0.81 +1.3

Or see this region's nucleotide sequence