Experiment: R2A_PIPES with Cadmium chloride 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01550 and LRK55_RS01555 are separated by 78 nucleotides LRK55_RS01555 and LRK55_RS01560 are separated by 6 nucleotides
LRK55_RS01550: LRK55_RS01550 - phosphate/phosphite/phosphonate ABC transporter substrate-binding protein, at 331,046 to 332,095
_RS01550
LRK55_RS01555: LRK55_RS01555 - DUF3025 domain-containing protein, at 332,174 to 332,977
_RS01555
LRK55_RS01560: LRK55_RS01560 - 30S ribosomal protein S12 methylthiotransferase RimO, at 332,984 to 334,321
_RS01560
Position (kb) 332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 331.259 kb on + strand, within LRK55_RS01550 at 331.259 kb on + strand, within LRK55_RS01550 at 331.331 kb on + strand, within LRK55_RS01550 at 331.332 kb on - strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.564 kb on - strand, within LRK55_RS01550 at 331.564 kb on - strand, within LRK55_RS01550 at 331.564 kb on - strand, within LRK55_RS01550 at 331.581 kb on + strand, within LRK55_RS01550 at 331.581 kb on + strand, within LRK55_RS01550 at 331.582 kb on - strand, within LRK55_RS01550 at 331.582 kb on - strand, within LRK55_RS01550 at 331.615 kb on - strand, within LRK55_RS01550 at 331.736 kb on + strand, within LRK55_RS01550 at 331.736 kb on + strand, within LRK55_RS01550 at 331.736 kb on + strand, within LRK55_RS01550 at 331.737 kb on - strand, within LRK55_RS01550 at 331.737 kb on - strand, within LRK55_RS01550 at 331.836 kb on + strand, within LRK55_RS01550 at 331.837 kb on - strand, within LRK55_RS01550 at 331.837 kb on - strand, within LRK55_RS01550 at 331.837 kb on - strand, within LRK55_RS01550 at 331.851 kb on - strand, within LRK55_RS01550 at 331.851 kb on - strand, within LRK55_RS01550 at 332.061 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.199 kb on + strand at 332.226 kb on + strand at 332.227 kb on - strand at 332.604 kb on + strand, within LRK55_RS01555 at 332.604 kb on + strand, within LRK55_RS01555 at 332.605 kb on - strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.776 kb on - strand, within LRK55_RS01555 at 332.776 kb on - strand, within LRK55_RS01555 at 332.776 kb on - strand, within LRK55_RS01555 at 332.970 kb on + strand at 332.971 kb on - strand at 332.985 kb on + strand at 332.985 kb on + strand at 332.986 kb on - strand at 332.986 kb on - strand at 332.986 kb on - strand at 333.555 kb on + strand, within LRK55_RS01560 at 333.555 kb on + strand, within LRK55_RS01560 at 333.556 kb on - strand, within LRK55_RS01560 at 333.616 kb on - strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.621 kb on + strand, within LRK55_RS01560 at 333.622 kb on - strand, within LRK55_RS01560 at 333.622 kb on - strand, within LRK55_RS01560 at 333.622 kb on - strand, within LRK55_RS01560 at 333.622 kb on - strand, within LRK55_RS01560 at 333.622 kb on - strand, within LRK55_RS01560 at 333.622 kb on - strand, within LRK55_RS01560 at 333.622 kb on - strand, within LRK55_RS01560 at 333.687 kb on + strand, within LRK55_RS01560 at 333.717 kb on + strand, within LRK55_RS01560 at 333.717 kb on + strand, within LRK55_RS01560 at 333.717 kb on + strand, within LRK55_RS01560 at 333.717 kb on + strand, within LRK55_RS01560 at 333.717 kb on + strand, within LRK55_RS01560 at 333.717 kb on + strand, within LRK55_RS01560 at 333.718 kb on - strand, within LRK55_RS01560 at 333.903 kb on + strand, within LRK55_RS01560 at 333.903 kb on + strand, within LRK55_RS01560 at 333.904 kb on - strand, within LRK55_RS01560 at 333.909 kb on + strand, within LRK55_RS01560 at 333.909 kb on + strand, within LRK55_RS01560 at 333.909 kb on + strand, within LRK55_RS01560 at 333.910 kb on - strand, within LRK55_RS01560 at 333.910 kb on - strand, within LRK55_RS01560
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM remove 331,259 + LRK55_RS01550 0.20 -1.1 331,259 + LRK55_RS01550 0.20 -0.0 331,331 + LRK55_RS01550 0.27 -0.2 331,332 - LRK55_RS01550 0.27 -1.6 331,563 + LRK55_RS01550 0.49 +0.7 331,563 + LRK55_RS01550 0.49 +1.4 331,563 + LRK55_RS01550 0.49 -0.6 331,563 + LRK55_RS01550 0.49 -0.5 331,563 + LRK55_RS01550 0.49 -1.1 331,563 + LRK55_RS01550 0.49 -1.3 331,563 + LRK55_RS01550 0.49 -1.1 331,563 + LRK55_RS01550 0.49 +1.7 331,563 + LRK55_RS01550 0.49 -1.2 331,564 - LRK55_RS01550 0.49 -0.8 331,564 - LRK55_RS01550 0.49 +0.1 331,564 - LRK55_RS01550 0.49 -1.6 331,581 + LRK55_RS01550 0.51 +0.8 331,581 + LRK55_RS01550 0.51 -0.3 331,582 - LRK55_RS01550 0.51 -1.2 331,582 - LRK55_RS01550 0.51 -0.2 331,615 - LRK55_RS01550 0.54 -0.8 331,736 + LRK55_RS01550 0.66 +0.3 331,736 + LRK55_RS01550 0.66 -2.1 331,736 + LRK55_RS01550 0.66 -0.2 331,737 - LRK55_RS01550 0.66 -0.8 331,737 - LRK55_RS01550 0.66 -0.7 331,836 + LRK55_RS01550 0.75 -0.3 331,837 - LRK55_RS01550 0.75 +0.3 331,837 - LRK55_RS01550 0.75 +0.8 331,837 - LRK55_RS01550 0.75 +0.8 331,851 - LRK55_RS01550 0.77 -1.5 331,851 - LRK55_RS01550 0.77 +0.0 332,061 + +1.9 332,129 + +2.4 332,129 + -2.0 332,129 + +0.4 332,129 + -0.5 332,129 + +0.6 332,129 + +1.4 332,129 + -0.2 332,129 + +0.3 332,129 + -0.4 332,129 + +0.1 332,129 + +1.4 332,129 + +1.3 332,129 + -1.7 332,129 + +0.2 332,129 + -1.3 332,129 + -0.4 332,129 + +1.5 332,129 + -0.3 332,130 - +1.1 332,130 - -3.0 332,130 - +1.6 332,130 - +1.5 332,130 - -1.2 332,130 - +0.7 332,130 - +0.7 332,130 - -1.9 332,130 - +0.5 332,130 - +0.7 332,130 - -0.4 332,130 - -1.3 332,130 - -0.3 332,130 - -0.1 332,130 - +0.4 332,130 - +0.8 332,130 - -0.4 332,130 - -2.1 332,130 - -0.1 332,130 - +0.9 332,130 - +1.5 332,130 - +0.2 332,131 + -0.7 332,131 + -0.3 332,131 + +0.1 332,131 + +0.6 332,131 + -0.1 332,132 - -1.5 332,132 - -1.3 332,132 - -0.1 332,132 - -0.5 332,132 - +0.7 332,132 - +1.0 332,132 - -0.3 332,132 - -0.4 332,132 - -2.3 332,133 + -0.1 332,133 + -1.7 332,133 + -2.0 332,133 + -0.9 332,133 + +0.4 332,133 + +2.3 332,133 + -1.9 332,133 + +0.1 332,133 + +0.5 332,133 + +0.6 332,134 - +0.6 332,134 - -0.2 332,134 - +0.2 332,134 - +1.1 332,134 - -0.7 332,134 - +2.1 332,134 - -0.5 332,199 + -1.3 332,226 + +0.2 332,227 - +0.0 332,604 + LRK55_RS01555 0.53 +0.7 332,604 + LRK55_RS01555 0.53 +0.3 332,605 - LRK55_RS01555 0.54 -2.7 332,775 + LRK55_RS01555 0.75 -1.5 332,775 + LRK55_RS01555 0.75 +1.1 332,775 + LRK55_RS01555 0.75 -0.9 332,775 + LRK55_RS01555 0.75 -1.5 332,775 + LRK55_RS01555 0.75 +1.1 332,775 + LRK55_RS01555 0.75 +0.0 332,775 + LRK55_RS01555 0.75 -0.9 332,776 - LRK55_RS01555 0.75 +0.9 332,776 - LRK55_RS01555 0.75 +1.3 332,776 - LRK55_RS01555 0.75 +2.7 332,970 + -1.6 332,971 - +0.2 332,985 + +1.3 332,985 + -1.2 332,986 - -0.2 332,986 - -2.1 332,986 - -0.2 333,555 + LRK55_RS01560 0.43 -0.1 333,555 + LRK55_RS01560 0.43 -0.9 333,556 - LRK55_RS01560 0.43 -0.6 333,616 - LRK55_RS01560 0.47 +0.6 333,621 + LRK55_RS01560 0.48 -1.3 333,621 + LRK55_RS01560 0.48 +0.7 333,621 + LRK55_RS01560 0.48 -1.3 333,621 + LRK55_RS01560 0.48 -1.3 333,621 + LRK55_RS01560 0.48 +0.5 333,621 + LRK55_RS01560 0.48 +1.0 333,621 + LRK55_RS01560 0.48 -0.0 333,621 + LRK55_RS01560 0.48 -1.3 333,622 - LRK55_RS01560 0.48 -1.3 333,622 - LRK55_RS01560 0.48 -1.0 333,622 - LRK55_RS01560 0.48 -1.1 333,622 - LRK55_RS01560 0.48 +0.5 333,622 - LRK55_RS01560 0.48 +0.7 333,622 - LRK55_RS01560 0.48 -2.6 333,622 - LRK55_RS01560 0.48 -0.4 333,687 + LRK55_RS01560 0.53 +1.1 333,717 + LRK55_RS01560 0.55 -0.1 333,717 + LRK55_RS01560 0.55 -0.7 333,717 + LRK55_RS01560 0.55 +1.3 333,717 + LRK55_RS01560 0.55 -3.1 333,717 + LRK55_RS01560 0.55 -2.3 333,717 + LRK55_RS01560 0.55 +2.9 333,718 - LRK55_RS01560 0.55 +0.3 333,903 + LRK55_RS01560 0.69 +2.7 333,903 + LRK55_RS01560 0.69 +0.1 333,904 - LRK55_RS01560 0.69 +2.0 333,909 + LRK55_RS01560 0.69 -1.3 333,909 + LRK55_RS01560 0.69 +1.1 333,909 + LRK55_RS01560 0.69 +1.9 333,910 - LRK55_RS01560 0.69 -0.0 333,910 - LRK55_RS01560 0.69 -2.4
Or see this region's nucleotide sequence