Experiment: Anaerobic no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS09280 and ABCV34_RS09285 are separated by 46 nucleotides ABCV34_RS09285 and ABCV34_RS09290 are separated by 17 nucleotides ABCV34_RS09290 and ABCV34_RS09295 are separated by 7 nucleotides
ABCV34_RS09280: ABCV34_RS09280 - phosphomannomutase/phosphoglucomutase, at 1,986,655 to 1,988,034
_RS09280
ABCV34_RS09285: ABCV34_RS09285 - aldolase/citrate lyase family protein, at 1,988,081 to 1,988,881
_RS09285
ABCV34_RS09290: ABCV34_RS09290 - 2-oxo-hept-4-ene-1,7-dioate hydratase, at 1,988,899 to 1,989,735
_RS09290
ABCV34_RS09295: ABCV34_RS09295 - 5-carboxymethyl-2-hydroxymuconate Delta-isomerase, at 1,989,743 to 1,990,132
_RS09295
Position (kb) 1988
1989 Strain fitness (log2 ratio) -2
-1
0
1 at 1988.033 kb on - strand at 1988.609 kb on + strand, within ABCV34_RS09285 at 1988.609 kb on + strand, within ABCV34_RS09285 at 1988.610 kb on - strand, within ABCV34_RS09285 at 1988.610 kb on - strand, within ABCV34_RS09285 at 1988.610 kb on - strand, within ABCV34_RS09285 at 1988.937 kb on - strand at 1988.953 kb on - strand at 1989.305 kb on + strand, within ABCV34_RS09290 at 1989.305 kb on + strand, within ABCV34_RS09290 at 1989.305 kb on + strand, within ABCV34_RS09290 at 1989.305 kb on + strand, within ABCV34_RS09290 at 1989.305 kb on + strand, within ABCV34_RS09290 at 1989.306 kb on - strand, within ABCV34_RS09290 at 1989.306 kb on - strand, within ABCV34_RS09290 at 1989.306 kb on - strand, within ABCV34_RS09290 at 1989.306 kb on - strand, within ABCV34_RS09290 at 1989.584 kb on + strand, within ABCV34_RS09290 at 1989.584 kb on + strand, within ABCV34_RS09290 at 1989.584 kb on + strand, within ABCV34_RS09290 at 1989.585 kb on - strand, within ABCV34_RS09290
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic no stress control remove 1,988,033 - -2.0 1,988,609 + ABCV34_RS09285 0.66 -1.6 1,988,609 + ABCV34_RS09285 0.66 -1.4 1,988,610 - ABCV34_RS09285 0.66 -1.5 1,988,610 - ABCV34_RS09285 0.66 -2.1 1,988,610 - ABCV34_RS09285 0.66 -2.2 1,988,937 - -2.2 1,988,953 - -2.0 1,989,305 + ABCV34_RS09290 0.49 -1.6 1,989,305 + ABCV34_RS09290 0.49 -1.5 1,989,305 + ABCV34_RS09290 0.49 -2.0 1,989,305 + ABCV34_RS09290 0.49 -1.4 1,989,305 + ABCV34_RS09290 0.49 -1.6 1,989,306 - ABCV34_RS09290 0.49 -2.4 1,989,306 - ABCV34_RS09290 0.49 -2.0 1,989,306 - ABCV34_RS09290 0.49 -1.3 1,989,306 - ABCV34_RS09290 0.49 -2.1 1,989,584 + ABCV34_RS09290 0.82 -2.3 1,989,584 + ABCV34_RS09290 0.82 -2.4 1,989,584 + ABCV34_RS09290 0.82 -2.3 1,989,585 - ABCV34_RS09290 0.82 -2.1
Or see this region's nucleotide sequence