Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS19085

Experiment: R2A_PIPES with Cadmium chloride 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS19080 and LRK55_RS19085 are separated by 90 nucleotidesLRK55_RS19085 and LRK55_RS19090 are separated by 74 nucleotides LRK55_RS19080: LRK55_RS19080 - glycosyltransferase family 9 protein, at 154,857 to 156,020 _RS19080 LRK55_RS19085: LRK55_RS19085 - GtrA family protein, at 156,111 to 156,527 _RS19085 LRK55_RS19090: LRK55_RS19090 - MFS transporter, at 156,602 to 157,783 _RS19090 Position (kb) 156 157Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 155.134 kb on + strand, within LRK55_RS19080at 155.135 kb on - strand, within LRK55_RS19080at 155.135 kb on - strand, within LRK55_RS19080at 155.137 kb on + strand, within LRK55_RS19080at 155.138 kb on - strand, within LRK55_RS19080at 155.158 kb on - strand, within LRK55_RS19080at 155.234 kb on - strand, within LRK55_RS19080at 155.234 kb on - strand, within LRK55_RS19080at 155.258 kb on - strand, within LRK55_RS19080at 155.308 kb on - strand, within LRK55_RS19080at 155.337 kb on + strand, within LRK55_RS19080at 155.337 kb on + strand, within LRK55_RS19080at 155.375 kb on + strand, within LRK55_RS19080at 155.376 kb on - strand, within LRK55_RS19080at 155.383 kb on - strand, within LRK55_RS19080at 155.404 kb on + strand, within LRK55_RS19080at 155.404 kb on + strand, within LRK55_RS19080at 155.416 kb on - strand, within LRK55_RS19080at 155.416 kb on - strand, within LRK55_RS19080at 155.416 kb on - strand, within LRK55_RS19080at 155.416 kb on - strand, within LRK55_RS19080at 155.416 kb on - strand, within LRK55_RS19080at 155.429 kb on - strand, within LRK55_RS19080at 155.429 kb on - strand, within LRK55_RS19080at 155.609 kb on - strand, within LRK55_RS19080at 155.609 kb on - strand, within LRK55_RS19080at 155.609 kb on - strand, within LRK55_RS19080at 155.652 kb on + strand, within LRK55_RS19080at 155.652 kb on + strand, within LRK55_RS19080at 155.652 kb on + strand, within LRK55_RS19080at 155.653 kb on - strand, within LRK55_RS19080at 155.653 kb on - strand, within LRK55_RS19080at 155.653 kb on - strand, within LRK55_RS19080at 155.653 kb on - strand, within LRK55_RS19080at 155.653 kb on - strand, within LRK55_RS19080at 155.653 kb on - strand, within LRK55_RS19080at 155.686 kb on - strand, within LRK55_RS19080at 155.716 kb on - strand, within LRK55_RS19080at 155.716 kb on - strand, within LRK55_RS19080at 155.716 kb on - strand, within LRK55_RS19080at 155.716 kb on - strand, within LRK55_RS19080at 155.716 kb on - strand, within LRK55_RS19080at 155.716 kb on - strand, within LRK55_RS19080at 155.767 kb on + strand, within LRK55_RS19080at 155.768 kb on - strand, within LRK55_RS19080at 155.838 kb on + strand, within LRK55_RS19080at 155.838 kb on + strand, within LRK55_RS19080at 155.838 kb on + strand, within LRK55_RS19080at 155.838 kb on + strand, within LRK55_RS19080at 155.838 kb on + strand, within LRK55_RS19080at 155.838 kb on + strand, within LRK55_RS19080at 155.839 kb on - strand, within LRK55_RS19080at 155.839 kb on - strand, within LRK55_RS19080at 155.839 kb on - strand, within LRK55_RS19080at 155.839 kb on - strand, within LRK55_RS19080at 155.839 kb on - strand, within LRK55_RS19080at 155.844 kb on + strand, within LRK55_RS19080at 155.991 kb on + strandat 156.036 kb on - strandat 156.075 kb on + strandat 156.141 kb on + strandat 156.186 kb on + strand, within LRK55_RS19085at 156.271 kb on + strand, within LRK55_RS19085at 156.272 kb on - strand, within LRK55_RS19085at 156.299 kb on + strand, within LRK55_RS19085at 156.300 kb on - strand, within LRK55_RS19085at 156.355 kb on - strand, within LRK55_RS19085at 156.432 kb on + strand, within LRK55_RS19085at 156.433 kb on - strand, within LRK55_RS19085at 156.453 kb on + strand, within LRK55_RS19085at 156.453 kb on + strand, within LRK55_RS19085at 156.454 kb on - strand, within LRK55_RS19085at 156.520 kb on + strandat 156.521 kb on - strandat 156.583 kb on + strandat 156.583 kb on + strandat 156.584 kb on - strandat 156.607 kb on + strandat 156.607 kb on + strandat 156.647 kb on + strandat 156.749 kb on + strand, within LRK55_RS19090at 156.749 kb on + strand, within LRK55_RS19090at 156.750 kb on - strand, within LRK55_RS19090at 156.861 kb on + strand, within LRK55_RS19090at 156.861 kb on + strand, within LRK55_RS19090at 156.861 kb on + strand, within LRK55_RS19090at 156.861 kb on + strand, within LRK55_RS19090at 156.892 kb on + strand, within LRK55_RS19090at 156.892 kb on + strand, within LRK55_RS19090at 156.893 kb on - strand, within LRK55_RS19090at 156.931 kb on - strand, within LRK55_RS19090at 157.065 kb on - strand, within LRK55_RS19090at 157.079 kb on + strand, within LRK55_RS19090at 157.079 kb on + strand, within LRK55_RS19090at 157.079 kb on + strand, within LRK55_RS19090at 157.079 kb on + strand, within LRK55_RS19090at 157.080 kb on - strand, within LRK55_RS19090at 157.377 kb on + strand, within LRK55_RS19090at 157.377 kb on + strand, within LRK55_RS19090at 157.377 kb on + strand, within LRK55_RS19090at 157.378 kb on - strand, within LRK55_RS19090at 157.378 kb on - strand, within LRK55_RS19090

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM
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155,134 + LRK55_RS19080 0.24 +0.4
155,135 - LRK55_RS19080 0.24 -2.1
155,135 - LRK55_RS19080 0.24 -0.9
155,137 + LRK55_RS19080 0.24 -0.6
155,138 - LRK55_RS19080 0.24 +0.7
155,158 - LRK55_RS19080 0.26 +2.3
155,234 - LRK55_RS19080 0.32 -2.9
155,234 - LRK55_RS19080 0.32 -0.1
155,258 - LRK55_RS19080 0.34 -0.3
155,308 - LRK55_RS19080 0.39 -2.0
155,337 + LRK55_RS19080 0.41 -0.8
155,337 + LRK55_RS19080 0.41 -1.0
155,375 + LRK55_RS19080 0.45 +0.4
155,376 - LRK55_RS19080 0.45 -3.0
155,383 - LRK55_RS19080 0.45 -3.5
155,404 + LRK55_RS19080 0.47 +0.1
155,404 + LRK55_RS19080 0.47 +0.2
155,416 - LRK55_RS19080 0.48 -2.0
155,416 - LRK55_RS19080 0.48 +0.0
155,416 - LRK55_RS19080 0.48 -2.6
155,416 - LRK55_RS19080 0.48 -3.1
155,416 - LRK55_RS19080 0.48 -0.8
155,429 - LRK55_RS19080 0.49 -3.7
155,429 - LRK55_RS19080 0.49 +0.6
155,609 - LRK55_RS19080 0.65 -0.2
155,609 - LRK55_RS19080 0.65 +1.0
155,609 - LRK55_RS19080 0.65 +0.4
155,652 + LRK55_RS19080 0.68 -0.5
155,652 + LRK55_RS19080 0.68 -0.2
155,652 + LRK55_RS19080 0.68 -0.2
155,653 - LRK55_RS19080 0.68 -0.9
155,653 - LRK55_RS19080 0.68 -1.3
155,653 - LRK55_RS19080 0.68 -0.2
155,653 - LRK55_RS19080 0.68 -3.8
155,653 - LRK55_RS19080 0.68 +0.8
155,653 - LRK55_RS19080 0.68 +1.4
155,686 - LRK55_RS19080 0.71 -1.5
155,716 - LRK55_RS19080 0.74 +2.7
155,716 - LRK55_RS19080 0.74 +0.9
155,716 - LRK55_RS19080 0.74 +2.7
155,716 - LRK55_RS19080 0.74 +1.6
155,716 - LRK55_RS19080 0.74 -1.4
155,716 - LRK55_RS19080 0.74 -0.5
155,767 + LRK55_RS19080 0.78 +0.6
155,768 - LRK55_RS19080 0.78 -3.9
155,838 + LRK55_RS19080 0.84 -2.6
155,838 + LRK55_RS19080 0.84 -1.0
155,838 + LRK55_RS19080 0.84 +1.6
155,838 + LRK55_RS19080 0.84 +1.4
155,838 + LRK55_RS19080 0.84 -0.4
155,838 + LRK55_RS19080 0.84 +0.2
155,839 - LRK55_RS19080 0.84 +0.1
155,839 - LRK55_RS19080 0.84 -0.3
155,839 - LRK55_RS19080 0.84 -0.7
155,839 - LRK55_RS19080 0.84 -0.7
155,839 - LRK55_RS19080 0.84 -1.6
155,844 + LRK55_RS19080 0.85 -1.7
155,991 + +0.1
156,036 - -3.5
156,075 + -2.8
156,141 + +0.8
156,186 + LRK55_RS19085 0.18 -0.1
156,271 + LRK55_RS19085 0.38 +0.8
156,272 - LRK55_RS19085 0.39 -1.0
156,299 + LRK55_RS19085 0.45 -2.9
156,300 - LRK55_RS19085 0.45 -2.4
156,355 - LRK55_RS19085 0.59 -1.9
156,432 + LRK55_RS19085 0.77 -1.0
156,433 - LRK55_RS19085 0.77 +0.2
156,453 + LRK55_RS19085 0.82 -1.1
156,453 + LRK55_RS19085 0.82 -3.7
156,454 - LRK55_RS19085 0.82 +1.0
156,520 + +0.6
156,521 - -0.1
156,583 + +1.1
156,583 + -0.2
156,584 - -2.5
156,607 + -1.3
156,607 + +1.3
156,647 + -1.3
156,749 + LRK55_RS19090 0.12 -1.3
156,749 + LRK55_RS19090 0.12 +1.0
156,750 - LRK55_RS19090 0.13 -0.3
156,861 + LRK55_RS19090 0.22 -0.9
156,861 + LRK55_RS19090 0.22 +0.3
156,861 + LRK55_RS19090 0.22 -2.0
156,861 + LRK55_RS19090 0.22 -0.7
156,892 + LRK55_RS19090 0.25 -3.3
156,892 + LRK55_RS19090 0.25 -2.2
156,893 - LRK55_RS19090 0.25 -0.2
156,931 - LRK55_RS19090 0.28 -2.6
157,065 - LRK55_RS19090 0.39 -2.5
157,079 + LRK55_RS19090 0.40 -1.7
157,079 + LRK55_RS19090 0.40 -2.4
157,079 + LRK55_RS19090 0.40 -0.5
157,079 + LRK55_RS19090 0.40 +0.4
157,080 - LRK55_RS19090 0.40 -0.5
157,377 + LRK55_RS19090 0.66 -0.2
157,377 + LRK55_RS19090 0.66 +0.3
157,377 + LRK55_RS19090 0.66 -0.4
157,378 - LRK55_RS19090 0.66 -0.2
157,378 - LRK55_RS19090 0.66 -0.3

Or see this region's nucleotide sequence