Experiment: R2A_PIPES with Cadmium chloride 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18735 and LRK55_RS18740 overlap by 1 nucleotides LRK55_RS18740 and LRK55_RS18745 overlap by 4 nucleotides
LRK55_RS18735: LRK55_RS18735 - CusA/CzcA family heavy metal efflux RND transporter, at 84,643 to 87,777
_RS18735
LRK55_RS18740: LRK55_RS18740 - efflux RND transporter periplasmic adaptor subunit, at 87,777 to 88,874
_RS18740
LRK55_RS18745: LRK55_RS18745 - TolC family protein, at 88,871 to 90,034
_RS18745
Position (kb) 87
88
89 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 86.780 kb on + strand, within LRK55_RS18735 at 86.780 kb on + strand, within LRK55_RS18735 at 86.780 kb on + strand, within LRK55_RS18735 at 86.781 kb on - strand, within LRK55_RS18735 at 86.877 kb on + strand, within LRK55_RS18735 at 86.979 kb on - strand, within LRK55_RS18735 at 87.063 kb on - strand, within LRK55_RS18735 at 87.468 kb on - strand at 87.468 kb on - strand at 87.491 kb on + strand at 87.491 kb on + strand at 87.743 kb on + strand at 87.841 kb on + strand at 87.841 kb on + strand at 87.841 kb on + strand at 87.841 kb on + strand at 87.841 kb on + strand at 87.842 kb on - strand at 87.842 kb on - strand at 87.842 kb on - strand at 87.972 kb on + strand, within LRK55_RS18740 at 87.972 kb on + strand, within LRK55_RS18740 at 87.972 kb on + strand, within LRK55_RS18740 at 87.972 kb on + strand, within LRK55_RS18740 at 87.973 kb on - strand, within LRK55_RS18740 at 87.973 kb on - strand, within LRK55_RS18740 at 88.409 kb on - strand, within LRK55_RS18740 at 88.409 kb on - strand, within LRK55_RS18740 at 88.653 kb on + strand, within LRK55_RS18740 at 88.663 kb on + strand, within LRK55_RS18740 at 88.663 kb on + strand, within LRK55_RS18740 at 88.663 kb on + strand, within LRK55_RS18740 at 88.739 kb on + strand, within LRK55_RS18740 at 88.868 kb on + strand at 88.868 kb on + strand at 88.868 kb on + strand at 88.868 kb on + strand at 88.868 kb on + strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 88.869 kb on - strand at 89.078 kb on + strand, within LRK55_RS18745 at 89.171 kb on + strand, within LRK55_RS18745 at 89.171 kb on + strand, within LRK55_RS18745 at 89.171 kb on + strand, within LRK55_RS18745 at 89.186 kb on + strand, within LRK55_RS18745 at 89.186 kb on + strand, within LRK55_RS18745 at 89.187 kb on - strand, within LRK55_RS18745 at 89.187 kb on - strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.793 kb on + strand, within LRK55_RS18745 at 89.794 kb on - strand, within LRK55_RS18745 at 89.794 kb on - strand, within LRK55_RS18745
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM remove 86,780 + LRK55_RS18735 0.68 -0.2 86,780 + LRK55_RS18735 0.68 -1.8 86,780 + LRK55_RS18735 0.68 +0.9 86,781 - LRK55_RS18735 0.68 -1.3 86,877 + LRK55_RS18735 0.71 +2.1 86,979 - LRK55_RS18735 0.75 +3.8 87,063 - LRK55_RS18735 0.77 +4.4 87,468 - +2.4 87,468 - +2.0 87,491 + +1.7 87,491 + +0.8 87,743 + +1.9 87,841 + +2.3 87,841 + +2.3 87,841 + +3.0 87,841 + +3.1 87,841 + +1.3 87,842 - +2.6 87,842 - +3.8 87,842 - +3.5 87,972 + LRK55_RS18740 0.18 +2.8 87,972 + LRK55_RS18740 0.18 +1.3 87,972 + LRK55_RS18740 0.18 -2.1 87,972 + LRK55_RS18740 0.18 +2.9 87,973 - LRK55_RS18740 0.18 +4.2 87,973 - LRK55_RS18740 0.18 +3.4 88,409 - LRK55_RS18740 0.58 -3.2 88,409 - LRK55_RS18740 0.58 +4.2 88,653 + LRK55_RS18740 0.80 +3.0 88,663 + LRK55_RS18740 0.81 +2.1 88,663 + LRK55_RS18740 0.81 +2.2 88,663 + LRK55_RS18740 0.81 +1.0 88,739 + LRK55_RS18740 0.88 -1.8 88,868 + +1.6 88,868 + -2.8 88,868 + +2.7 88,868 + +3.1 88,868 + +1.7 88,869 - +3.3 88,869 - +2.5 88,869 - +2.2 88,869 - +2.8 88,869 - +3.0 88,869 - -1.2 88,869 - +1.9 88,869 - +2.5 89,078 + LRK55_RS18745 0.18 -0.6 89,171 + LRK55_RS18745 0.26 +3.0 89,171 + LRK55_RS18745 0.26 +2.6 89,171 + LRK55_RS18745 0.26 +3.1 89,186 + LRK55_RS18745 0.27 +1.4 89,186 + LRK55_RS18745 0.27 +1.4 89,187 - LRK55_RS18745 0.27 -2.3 89,187 - LRK55_RS18745 0.27 +0.9 89,793 + LRK55_RS18745 0.79 -1.3 89,793 + LRK55_RS18745 0.79 +1.9 89,793 + LRK55_RS18745 0.79 +1.7 89,793 + LRK55_RS18745 0.79 +2.5 89,793 + LRK55_RS18745 0.79 +3.9 89,794 - LRK55_RS18745 0.79 -2.7 89,794 - LRK55_RS18745 0.79 -0.6
Or see this region's nucleotide sequence