Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS15025

Experiment: R2A_PIPES with Cadmium chloride 64 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 64 uM
3,302,409	+		LRK55_RS15020	0.23	-3.1
3,302,409	+		LRK55_RS15020	0.23	-1.1
3,302,409	+		LRK55_RS15020	0.23	+1.3
3,302,409	+		LRK55_RS15020	0.23	-2.3
3,302,409	+		LRK55_RS15020	0.23	+0.1
3,302,409	+		LRK55_RS15020	0.23	-1.2
3,302,409	+		LRK55_RS15020	0.23	+2.3
3,302,409	+		LRK55_RS15020	0.23	+0.8
3,302,409	+		LRK55_RS15020	0.23	+0.1
3,302,409	+		LRK55_RS15020	0.23	+1.2
3,302,409	+		LRK55_RS15020	0.23	+1.7
3,302,409	+		LRK55_RS15020	0.23	+0.9
3,302,409	+		LRK55_RS15020	0.23	-1.0
3,302,409	+		LRK55_RS15020	0.23	-0.4
3,302,409	+		LRK55_RS15020	0.23	-0.3
3,302,410	-		LRK55_RS15020	0.23	-1.2
3,302,410	-		LRK55_RS15020	0.23	-3.0
3,302,410	-		LRK55_RS15020	0.23	-0.4
3,302,410	-		LRK55_RS15020	0.23	-2.3
3,302,410	-		LRK55_RS15020	0.23	-0.8
3,302,410	-		LRK55_RS15020	0.23	+1.6
3,302,410	-		LRK55_RS15020	0.23	-0.3
3,302,410	-		LRK55_RS15020	0.23	+0.1
3,302,410	-		LRK55_RS15020	0.23	+1.8
3,302,410	-		LRK55_RS15020	0.23	+1.3
3,302,440	-		LRK55_RS15020	0.27	-3.1
3,302,440	-		LRK55_RS15020	0.27	-2.2
3,302,782	-		LRK55_RS15020	0.65	+1.2
3,302,799	+		LRK55_RS15020	0.66	-0.1
3,302,799	+		LRK55_RS15020	0.66	+0.7
3,302,799	+		LRK55_RS15020	0.66	-1.4
3,302,799	+		LRK55_RS15020	0.66	+0.2
3,302,799	+		LRK55_RS15020	0.66	-1.1
3,302,799	+		LRK55_RS15020	0.66	-1.5
3,302,799	+		LRK55_RS15020	0.66	-1.3
3,302,800	-		LRK55_RS15020	0.67	-0.4
3,302,800	-		LRK55_RS15020	0.67	+0.8
3,302,800	-		LRK55_RS15020	0.67	+1.4
3,302,800	-		LRK55_RS15020	0.67	+0.6
3,302,800	-		LRK55_RS15020	0.67	-0.3
3,302,800	-		LRK55_RS15020	0.67	+3.2
3,302,800	-		LRK55_RS15020	0.67	-1.8
3,303,099	+				+0.9
3,303,099	+				+1.2
3,303,099	+				+0.4
3,303,099	+				+0.8
3,303,099	+				-2.4
3,303,099	+				+1.4
3,303,100	-				-0.2
3,303,100	-				-1.8
3,303,100	-				-0.5
3,303,100	-				+0.7
3,303,100	-				-1.0
3,303,100	-				-0.1
3,303,100	-				-0.1
3,303,100	-				+1.2
3,303,100	-				+0.5
3,303,100	-				+0.2
3,303,100	-				+0.2
3,303,100	-				+0.4
3,303,100	-				-3.9
3,303,134	+				+0.9
3,303,135	-				+0.4
3,303,135	-				-1.6
3,303,135	-				+1.4
3,303,198	+				+0.5
3,303,198	+				-3.1
3,303,231	+				-1.6
3,303,524	+				-1.4
3,303,524	+				+1.8
3,303,524	+				+0.2
3,303,524	+				-1.2
3,303,525	-				-0.6
3,303,525	-				+1.0
3,303,533	+				-2.1
3,303,533	+				-1.3
3,303,533	+				+1.0
3,303,533	+				+0.2
3,303,533	+				+3.8
3,303,533	+				-0.7
3,303,533	+				-0.4
3,303,533	+				-0.4
3,303,533	+				+0.2
3,303,533	+				+1.6
3,303,533	+				+0.8
3,303,533	+				+0.6
3,303,533	+				-0.4
3,303,533	+				+0.0
3,303,533	+				-1.1
3,303,533	+				+2.0
3,303,534	-				+0.2
3,303,534	-				+0.5
3,303,534	-				+0.5
3,303,534	-				-0.7
3,303,534	-				+2.2
3,303,534	-				+2.3
3,303,534	-				+0.5
3,303,534	-				+3.0
3,303,534	-				-0.1
3,303,534	-				+0.2
3,303,534	-				+0.7
3,303,534	-				-0.0
3,303,534	-				-1.0
3,303,534	-				+0.5
3,303,534	-				+0.1
3,303,636	-				-0.4
3,303,653	+		LRK55_RS15025	0.10	+0.5
3,303,653	+		LRK55_RS15025	0.10	+1.8
3,303,653	+		LRK55_RS15025	0.10	+1.8
3,303,653	+		LRK55_RS15025	0.10	+3.3
3,303,653	+		LRK55_RS15025	0.10	-0.2
3,303,653	+		LRK55_RS15025	0.10	+0.8
3,303,653	+		LRK55_RS15025	0.10	-1.2
3,303,653	+		LRK55_RS15025	0.10	+0.7
3,303,654	-		LRK55_RS15025	0.10	-0.6
3,303,654	-		LRK55_RS15025	0.10	-0.1
3,303,654	-		LRK55_RS15025	0.10	+0.9
3,303,654	-		LRK55_RS15025	0.10	+0.9
3,303,654	-		LRK55_RS15025	0.10	-1.8
3,303,654	-		LRK55_RS15025	0.10	-1.1
3,303,654	-		LRK55_RS15025	0.10	+0.7
3,303,654	-		LRK55_RS15025	0.10	+0.3
3,303,654	-		LRK55_RS15025	0.10	+0.2
3,304,082	+		LRK55_RS15025	0.22	+2.2
3,304,082	+		LRK55_RS15025	0.22	+0.2
3,304,082	+		LRK55_RS15025	0.22	+0.9
3,304,082	+		LRK55_RS15025	0.22	+0.4
3,304,082	+		LRK55_RS15025	0.22	-1.2
3,304,082	+		LRK55_RS15025	0.22	+1.2
3,304,082	+		LRK55_RS15025	0.22	+0.8
3,304,082	+		LRK55_RS15025	0.22	-0.0
3,304,082	+		LRK55_RS15025	0.22	-1.6
3,304,082	+		LRK55_RS15025	0.22	-0.8
3,304,082	+		LRK55_RS15025	0.22	+0.5
3,304,082	+		LRK55_RS15025	0.22	-1.2
3,304,082	+		LRK55_RS15025	0.22	-0.9
3,304,083	-		LRK55_RS15025	0.22	-0.7
3,304,083	-		LRK55_RS15025	0.22	+1.0
3,304,083	-		LRK55_RS15025	0.22	+1.2
3,304,083	-		LRK55_RS15025	0.22	-0.1
3,304,083	-		LRK55_RS15025	0.22	+0.0
3,304,083	-		LRK55_RS15025	0.22	+0.4
3,304,169	+		LRK55_RS15025	0.24	-0.3
3,304,169	+		LRK55_RS15025	0.24	+1.9
3,304,169	+		LRK55_RS15025	0.24	-2.2
3,304,169	+		LRK55_RS15025	0.24	+0.6
3,304,247	+		LRK55_RS15025	0.27	+1.3
3,304,247	+		LRK55_RS15025	0.27	-0.5
3,304,247	+		LRK55_RS15025	0.27	+0.9
3,304,247	+		LRK55_RS15025	0.27	-0.4
3,304,247	+		LRK55_RS15025	0.27	-0.4
3,304,248	-		LRK55_RS15025	0.27	-0.4
3,304,248	-		LRK55_RS15025	0.27	+0.2
3,304,248	-		LRK55_RS15025	0.27	+0.2
3,304,433	+		LRK55_RS15025	0.32	-1.2
3,304,433	+		LRK55_RS15025	0.32	+0.4
3,304,491	+		LRK55_RS15025	0.33	+0.5
3,304,491	+		LRK55_RS15025	0.33	+1.2
3,304,491	+		LRK55_RS15025	0.33	-1.6
3,304,491	+		LRK55_RS15025	0.33	+0.4
3,304,491	+		LRK55_RS15025	0.33	+0.0
3,304,491	+		LRK55_RS15025	0.33	+0.4
3,304,491	+		LRK55_RS15025	0.33	+0.7
3,304,491	+		LRK55_RS15025	0.33	-0.0
3,304,492	-		LRK55_RS15025	0.33	+0.5
3,304,492	-		LRK55_RS15025	0.33	-0.3
3,304,492	-		LRK55_RS15025	0.33	+0.4
3,304,492	-		LRK55_RS15025	0.33	+0.6
3,304,492	-		LRK55_RS15025	0.33	+0.3
3,304,569	+		LRK55_RS15025	0.35	+0.5
3,304,570	-		LRK55_RS15025	0.35	+0.4
3,304,570	-		LRK55_RS15025	0.35	-1.8
3,304,570	-		LRK55_RS15025	0.35	-0.1
3,304,652	+		LRK55_RS15025	0.38	+1.1
3,304,653	-		LRK55_RS15025	0.38	+1.1
3,304,653	-		LRK55_RS15025	0.38	+0.5
3,304,653	-		LRK55_RS15025	0.38	+0.6
3,304,736	+		LRK55_RS15025	0.40	-0.6
3,304,736	+		LRK55_RS15025	0.40	+0.4
3,304,736	+		LRK55_RS15025	0.40	+0.4
3,304,737	-		LRK55_RS15025	0.40	+1.2
3,304,737	-		LRK55_RS15025	0.40	+0.4
3,304,737	-		LRK55_RS15025	0.40	+0.7
3,304,739	+		LRK55_RS15025	0.40	+1.0
3,304,740	-		LRK55_RS15025	0.40	-2.4
3,304,740	-		LRK55_RS15025	0.40	-0.1
3,304,740	-		LRK55_RS15025	0.40	-0.4
3,304,740	-		LRK55_RS15025	0.40	-1.4
3,304,794	-		LRK55_RS15025	0.41	+1.5
3,305,028	-		LRK55_RS15025	0.48	-0.2
3,305,028	-		LRK55_RS15025	0.48	+0.4
3,305,093	+		LRK55_RS15025	0.50	+2.6
3,305,093	+		LRK55_RS15025	0.50	+0.4
3,305,094	-		LRK55_RS15025	0.50	+1.6
3,305,123	+		LRK55_RS15025	0.50	-0.5
3,305,123	+		LRK55_RS15025	0.50	-0.1
3,305,123	+		LRK55_RS15025	0.50	+0.2
3,305,123	+		LRK55_RS15025	0.50	-2.5
3,305,124	-		LRK55_RS15025	0.50	-0.2
3,305,124	-		LRK55_RS15025	0.50	+0.6
3,305,124	-		LRK55_RS15025	0.50	+0.2
3,305,124	-		LRK55_RS15025	0.50	-0.3
3,305,159	+		LRK55_RS15025	0.51	+0.9
3,305,160	-		LRK55_RS15025	0.51	+0.5
3,305,160	-		LRK55_RS15025	0.51	-0.1
3,305,274	-		LRK55_RS15025	0.54	-0.8
3,305,274	-		LRK55_RS15025	0.54	-0.5
3,305,372	+		LRK55_RS15025	0.57	-1.4
3,305,372	+		LRK55_RS15025	0.57	-1.1
3,305,373	-		LRK55_RS15025	0.57	+0.9
3,305,373	-		LRK55_RS15025	0.57	-0.6
3,305,373	-		LRK55_RS15025	0.57	+0.3
3,305,432	+		LRK55_RS15025	0.59	-0.4
3,305,432	+		LRK55_RS15025	0.59	+0.3
3,305,433	-		LRK55_RS15025	0.59	+1.1
3,305,465	+		LRK55_RS15025	0.60	-1.0
3,305,465	+		LRK55_RS15025	0.60	+1.8
3,305,466	-		LRK55_RS15025	0.60	+0.1
3,305,525	+		LRK55_RS15025	0.61	-1.8
3,305,526	-		LRK55_RS15025	0.61	-0.2
3,305,642	+		LRK55_RS15025	0.64	-2.8
3,305,642	+		LRK55_RS15025	0.64	+0.5
3,305,642	+		LRK55_RS15025	0.64	+0.6
3,305,642	+		LRK55_RS15025	0.64	+0.5
3,305,642	+		LRK55_RS15025	0.64	-0.6
3,305,642	+		LRK55_RS15025	0.64	+0.7
3,305,697	+		LRK55_RS15025	0.66	+0.7
3,305,697	+		LRK55_RS15025	0.66	-2.3
3,305,698	-		LRK55_RS15025	0.66	+0.4
3,305,698	-		LRK55_RS15025	0.66	+1.0
3,305,698	-		LRK55_RS15025	0.66	-0.8
3,305,699	+		LRK55_RS15025	0.66	+0.2
3,305,699	+		LRK55_RS15025	0.66	-3.4
3,305,699	+		LRK55_RS15025	0.66	+2.4
3,305,699	+		LRK55_RS15025	0.66	+1.2
3,305,699	+		LRK55_RS15025	0.66	+0.5
3,305,699	+		LRK55_RS15025	0.66	+0.8
3,305,700	-		LRK55_RS15025	0.66	-2.5
3,305,723	+		LRK55_RS15025	0.67	+0.4
3,305,724	-		LRK55_RS15025	0.67	+2.1
3,305,810	+		LRK55_RS15025	0.69	-0.6
3,305,810	+		LRK55_RS15025	0.69	+1.1
3,305,811	-		LRK55_RS15025	0.69	+1.4
3,305,811	-		LRK55_RS15025	0.69	+0.3
3,305,948	+		LRK55_RS15025	0.73	-2.2
3,305,948	+		LRK55_RS15025	0.73	+3.4
3,305,948	+		LRK55_RS15025	0.73	-1.3
3,305,948	+		LRK55_RS15025	0.73	-2.9
3,305,948	+		LRK55_RS15025	0.73	-2.2
3,305,948	+		LRK55_RS15025	0.73	-1.4
3,305,949	-		LRK55_RS15025	0.73	+3.1
3,305,949	-		LRK55_RS15025	0.73	-2.4
3,305,978	+		LRK55_RS15025	0.74	+0.6
3,306,077	+		LRK55_RS15025	0.76	+0.9
3,306,077	+		LRK55_RS15025	0.76	-1.2
3,306,077	+		LRK55_RS15025	0.76	-0.2
3,306,077	+		LRK55_RS15025	0.76	-0.4
3,306,077	+		LRK55_RS15025	0.76	-2.9
3,306,077	+		LRK55_RS15025	0.76	+0.8
3,306,078	-		LRK55_RS15025	0.76	+1.0
3,306,078	-		LRK55_RS15025	0.76	+1.3
3,306,078	-		LRK55_RS15025	0.76	-1.5
3,306,080	+		LRK55_RS15025	0.76	-1.2
3,306,080	+		LRK55_RS15025	0.76	+1.5
3,306,080	+		LRK55_RS15025	0.76	-0.1
3,306,080	+		LRK55_RS15025	0.76	+0.9
3,306,080	+		LRK55_RS15025	0.76	+1.1
3,306,080	+		LRK55_RS15025	0.76	+0.0
3,306,081	-		LRK55_RS15025	0.76	+1.4
3,306,081	-		LRK55_RS15025	0.76	+0.9
3,306,081	-		LRK55_RS15025	0.76	+0.5
3,306,081	-		LRK55_RS15025	0.76	+1.1
3,306,158	+		LRK55_RS15025	0.78	+0.2
3,306,159	-		LRK55_RS15025	0.79	+0.1
3,306,159	-		LRK55_RS15025	0.79	-0.3
3,306,159	-		LRK55_RS15025	0.79	+0.3
3,306,159	-		LRK55_RS15025	0.79	-0.3
3,306,159	-		LRK55_RS15025	0.79	-0.5
3,306,159	-		LRK55_RS15025	0.79	+0.7
3,306,248	+		LRK55_RS15025	0.81	+0.7
3,306,248	+		LRK55_RS15025	0.81	-1.3
3,306,248	+		LRK55_RS15025	0.81	+1.4
3,306,249	-		LRK55_RS15025	0.81	+1.6
3,306,249	-		LRK55_RS15025	0.81	+0.6
3,306,249	-		LRK55_RS15025	0.81	+0.3
3,306,249	-		LRK55_RS15025	0.81	+1.9
3,306,249	-		LRK55_RS15025	0.81	+0.7
3,306,249	-		LRK55_RS15025	0.81	-0.1
3,306,249	-		LRK55_RS15025	0.81	+0.5
3,306,249	-		LRK55_RS15025	0.81	-1.2
3,306,249	-		LRK55_RS15025	0.81	+1.3
3,306,329	+		LRK55_RS15025	0.83	+0.9
3,306,329	+		LRK55_RS15025	0.83	+0.7
3,306,329	+		LRK55_RS15025	0.83	-0.2
3,306,329	+		LRK55_RS15025	0.83	+3.2
3,306,329	+		LRK55_RS15025	0.83	-0.5
3,306,329	+		LRK55_RS15025	0.83	+0.2
3,306,329	+		LRK55_RS15025	0.83	+1.2
3,306,329	+		LRK55_RS15025	0.83	-0.4
3,306,329	+		LRK55_RS15025	0.83	+0.8
3,306,330	-		LRK55_RS15025	0.83	-1.2
3,306,330	-		LRK55_RS15025	0.83	-2.0
3,306,330	-		LRK55_RS15025	0.83	-0.8
3,306,330	-		LRK55_RS15025	0.83	-1.2
3,306,372	-		LRK55_RS15025	0.84	-0.4
3,306,372	-		LRK55_RS15025	0.84	-3.4
3,306,488	+		LRK55_RS15025	0.87	+0.6
3,306,488	+		LRK55_RS15025	0.87	+1.7
3,306,488	+		LRK55_RS15025	0.87	-0.3
3,306,488	+		LRK55_RS15025	0.87	+0.8
3,306,489	-		LRK55_RS15025	0.87	+0.3
3,306,489	-		LRK55_RS15025	0.87	-0.8
3,306,489	-		LRK55_RS15025	0.87	-0.6
3,306,489	-		LRK55_RS15025	0.87	-2.0
3,306,489	-		LRK55_RS15025	0.87	-0.8
3,306,489	-		LRK55_RS15025	0.87	+0.2
3,306,530	+		LRK55_RS15025	0.89	+0.6
3,306,530	+		LRK55_RS15025	0.89	-1.6
3,306,530	+		LRK55_RS15025	0.89	+0.8
3,306,530	+		LRK55_RS15025	0.89	-1.2
3,306,531	-		LRK55_RS15025	0.89	-1.2
3,306,531	-		LRK55_RS15025	0.89	-0.0
3,306,531	-		LRK55_RS15025	0.89	+1.6
3,306,531	-		LRK55_RS15025	0.89	-0.4
3,306,531	-		LRK55_RS15025	0.89	-1.2
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3,306,590	+				+0.5
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3,307,175	+		LRK55_RS15030	0.41	-0.2
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3,307,801	-		LRK55_RS15040	0.27	+1.2
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3,307,801	-		LRK55_RS15040	0.27	-2.6
3,307,903	+		LRK55_RS15040	0.54	-2.3
3,307,935	+		LRK55_RS15040	0.62	-0.6