Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS15015

Experiment: R2A_PIPES with Cadmium chloride 64 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 64 uM
3,300,683	+				+0.9
3,300,728	+				+1.2
3,300,728	+				-0.5
3,300,729	-				+0.7
3,300,729	-				+0.2
3,300,729	-				-0.6
3,300,890	+		LRK55_RS15010	0.26	+0.5
3,300,890	+		LRK55_RS15010	0.26	-1.0
3,300,890	+		LRK55_RS15010	0.26	-0.3
3,300,890	+		LRK55_RS15010	0.26	-0.6
3,300,890	+		LRK55_RS15010	0.26	+0.7
3,300,891	-		LRK55_RS15010	0.26	+0.0
3,300,891	-		LRK55_RS15010	0.26	-1.4
3,300,891	-		LRK55_RS15010	0.26	+0.9
3,300,891	-		LRK55_RS15010	0.26	-2.3
3,300,891	-		LRK55_RS15010	0.26	+0.5
3,300,891	-		LRK55_RS15010	0.26	+0.2
3,300,891	-		LRK55_RS15010	0.26	-2.3
3,300,891	-		LRK55_RS15010	0.26	+1.3
3,300,891	-		LRK55_RS15010	0.26	+0.1
3,300,891	-		LRK55_RS15010	0.26	-0.9
3,301,016	+		LRK55_RS15010	0.42	+2.2
3,301,016	+		LRK55_RS15010	0.42	-0.0
3,301,016	+		LRK55_RS15010	0.42	+0.2
3,301,016	+		LRK55_RS15010	0.42	+0.1
3,301,017	-		LRK55_RS15010	0.42	-0.7
3,301,017	-		LRK55_RS15010	0.42	+0.9
3,301,017	-		LRK55_RS15010	0.42	+1.6
3,301,017	-		LRK55_RS15010	0.42	-0.1
3,301,017	-		LRK55_RS15010	0.42	-0.1
3,301,295	+		LRK55_RS15010	0.77	-0.4
3,301,295	+		LRK55_RS15010	0.77	+0.3
3,301,513	+				-1.4
3,301,513	+				-2.1
3,301,513	+				-1.3
3,301,513	+				+2.2
3,301,513	+				+1.6
3,301,513	+				+0.0
3,301,513	+				+0.5
3,301,513	+				-0.4
3,301,513	+				+0.1
3,301,513	+				-1.2
3,301,513	+				-1.4
3,301,513	+				-0.0
3,301,514	-				+2.0
3,301,514	-				-1.4
3,301,514	-				-1.4
3,301,514	-				+0.0
3,301,514	-				+0.3
3,301,514	-				-0.1
3,301,514	-				-0.4
3,301,514	-				-0.6
3,301,514	-				-0.5
3,301,514	-				+1.3
3,301,514	-				+0.2
3,301,514	-				+0.9
3,301,514	-				-0.3
3,301,514	-				+1.8
3,301,514	-				-0.3
3,301,514	-				+0.3
3,301,517	+				+1.2
3,301,517	+				+1.4
3,301,517	+				+0.4
3,301,517	+				-0.0
3,301,517	+				+0.6
3,301,517	+				-1.8
3,301,517	+				+1.3
3,301,517	+				+0.4
3,301,517	+				+1.2
3,301,517	+				+1.2
3,301,517	+				+0.3
3,301,517	+				+0.9
3,301,517	+				+0.3
3,301,517	+				-0.1
3,301,517	+				-4.3
3,301,517	+				-1.6
3,301,517	+				+0.8
3,301,517	+				+0.2
3,301,517	+				+0.7
3,301,517	+				-0.5
3,301,517	+				-2.3
3,301,517	+				+0.1
3,301,517	+				-0.0
3,301,518	-				-2.4
3,301,518	-				+0.5
3,301,518	-				-1.5
3,301,518	-				+0.6
3,301,518	-				-1.0
3,301,518	-				-0.1
3,301,518	-				+1.6
3,301,518	-				+0.4
3,301,518	-				+0.4
3,301,518	-				-2.2
3,301,518	-				-3.2
3,301,518	-				+0.5
3,301,518	-				-2.0
3,301,518	-				-0.3
3,301,518	-				+1.2
3,301,518	-				+0.7
3,301,518	-				+0.4
3,301,518	-				+1.4
3,301,518	-				-0.4
3,301,518	-				+1.5
3,301,518	-				-0.1
3,301,649	+		LRK55_RS15015	0.10	+1.1
3,301,649	+		LRK55_RS15015	0.10	-0.8
3,301,650	-		LRK55_RS15015	0.11	+2.1
3,301,650	-		LRK55_RS15015	0.11	+1.7
3,301,650	-		LRK55_RS15015	0.11	-0.7
3,301,720	+		LRK55_RS15015	0.22	-0.2
3,301,720	+		LRK55_RS15015	0.22	+1.0
3,301,720	+		LRK55_RS15015	0.22	+1.2
3,301,720	+		LRK55_RS15015	0.22	-0.5
3,301,720	+		LRK55_RS15015	0.22	+3.1
3,301,720	+		LRK55_RS15015	0.22	+0.6
3,301,720	+		LRK55_RS15015	0.22	+1.5
3,301,721	-		LRK55_RS15015	0.22	-2.3
3,301,721	-		LRK55_RS15015	0.22	+0.6
3,301,721	-		LRK55_RS15015	0.22	-2.9
3,301,721	-		LRK55_RS15015	0.22	-0.8
3,301,721	-		LRK55_RS15015	0.22	-2.9
3,301,721	-		LRK55_RS15015	0.22	-1.5
3,301,721	-		LRK55_RS15015	0.22	+0.2
3,301,721	-		LRK55_RS15015	0.22	-0.8
3,301,721	-		LRK55_RS15015	0.22	-2.3
3,301,721	-		LRK55_RS15015	0.22	-2.0
3,301,721	-		LRK55_RS15015	0.22	+1.2
3,301,721	-		LRK55_RS15015	0.22	+1.9
3,301,721	-		LRK55_RS15015	0.22	-1.4
3,301,931	+		LRK55_RS15015	0.57	-1.9
3,301,931	+		LRK55_RS15015	0.57	-1.7
3,301,932	-		LRK55_RS15015	0.57	+1.2
3,301,932	-		LRK55_RS15015	0.57	-0.7
3,302,078	+		LRK55_RS15015	0.82	+0.3
3,302,078	+		LRK55_RS15015	0.82	+0.9
3,302,078	+		LRK55_RS15015	0.82	+0.6
3,302,078	+		LRK55_RS15015	0.82	+1.6
3,302,078	+		LRK55_RS15015	0.82	-0.8
3,302,078	+		LRK55_RS15015	0.82	+0.2
3,302,078	+		LRK55_RS15015	0.82	-2.6
3,302,078	+		LRK55_RS15015	0.82	+1.9
3,302,078	+		LRK55_RS15015	0.82	+1.5
3,302,078	+		LRK55_RS15015	0.82	+0.8
3,302,078	+		LRK55_RS15015	0.82	-2.7
3,302,078	+		LRK55_RS15015	0.82	+0.9
3,302,078	+		LRK55_RS15015	0.82	+1.4
3,302,078	+		LRK55_RS15015	0.82	+1.2
3,302,078	+		LRK55_RS15015	0.82	+2.2
3,302,079	-		LRK55_RS15015	0.82	-0.1
3,302,079	-		LRK55_RS15015	0.82	+0.8
3,302,079	-		LRK55_RS15015	0.82	-1.4
3,302,079	-		LRK55_RS15015	0.82	-0.2
3,302,079	-		LRK55_RS15015	0.82	+1.3
3,302,079	-		LRK55_RS15015	0.82	-0.8
3,302,079	-		LRK55_RS15015	0.82	-2.7
3,302,079	-		LRK55_RS15015	0.82	-2.7
3,302,079	-		LRK55_RS15015	0.82	-2.0
3,302,079	-		LRK55_RS15015	0.82	+0.9
3,302,079	-		LRK55_RS15015	0.82	+0.2
3,302,079	-		LRK55_RS15015	0.82	-0.8
3,302,143	+				+1.4
3,302,409	+		LRK55_RS15020	0.23	-3.1
3,302,409	+		LRK55_RS15020	0.23	-1.1
3,302,409	+		LRK55_RS15020	0.23	+1.3
3,302,409	+		LRK55_RS15020	0.23	-2.3
3,302,409	+		LRK55_RS15020	0.23	+0.1
3,302,409	+		LRK55_RS15020	0.23	-1.2
3,302,409	+		LRK55_RS15020	0.23	+2.3
3,302,409	+		LRK55_RS15020	0.23	+0.8
3,302,409	+		LRK55_RS15020	0.23	+0.1
3,302,409	+		LRK55_RS15020	0.23	+1.2
3,302,409	+		LRK55_RS15020	0.23	+1.7
3,302,409	+		LRK55_RS15020	0.23	+0.9
3,302,409	+		LRK55_RS15020	0.23	-1.0
3,302,409	+		LRK55_RS15020	0.23	-0.4
3,302,409	+		LRK55_RS15020	0.23	-0.3
3,302,410	-		LRK55_RS15020	0.23	-1.2
3,302,410	-		LRK55_RS15020	0.23	-3.0
3,302,410	-		LRK55_RS15020	0.23	-0.4
3,302,410	-		LRK55_RS15020	0.23	-2.3
3,302,410	-		LRK55_RS15020	0.23	-0.8
3,302,410	-		LRK55_RS15020	0.23	+1.6
3,302,410	-		LRK55_RS15020	0.23	-0.3
3,302,410	-		LRK55_RS15020	0.23	+0.1
3,302,410	-		LRK55_RS15020	0.23	+1.8
3,302,410	-		LRK55_RS15020	0.23	+1.3
3,302,440	-		LRK55_RS15020	0.27	-3.1
3,302,440	-		LRK55_RS15020	0.27	-2.2
3,302,782	-		LRK55_RS15020	0.65	+1.2
3,302,799	+		LRK55_RS15020	0.66	-0.1
3,302,799	+		LRK55_RS15020	0.66	+0.7
3,302,799	+		LRK55_RS15020	0.66	-1.4
3,302,799	+		LRK55_RS15020	0.66	+0.2
3,302,799	+		LRK55_RS15020	0.66	-1.1
3,302,799	+		LRK55_RS15020	0.66	-1.5
3,302,799	+		LRK55_RS15020	0.66	-1.3
3,302,800	-		LRK55_RS15020	0.67	-0.4
3,302,800	-		LRK55_RS15020	0.67	+0.8
3,302,800	-		LRK55_RS15020	0.67	+1.4
3,302,800	-		LRK55_RS15020	0.67	+0.6
3,302,800	-		LRK55_RS15020	0.67	-0.3
3,302,800	-		LRK55_RS15020	0.67	+3.2
3,302,800	-		LRK55_RS15020	0.67	-1.8
3,303,099	+				+0.9
3,303,099	+				+1.2
3,303,099	+				+0.4
3,303,099	+				+0.8
3,303,099	+				-2.4
3,303,099	+				+1.4
3,303,100	-				-0.2
3,303,100	-				-1.8
3,303,100	-				-0.5
3,303,100	-				+0.7
3,303,100	-				-1.0
3,303,100	-				-0.1
3,303,100	-				-0.1
3,303,100	-				+1.2
3,303,100	-				+0.5
3,303,100	-				+0.2
3,303,100	-				+0.2
3,303,100	-				+0.4
3,303,100	-				-3.9
3,303,134	+				+0.9
3,303,135	-				+0.4
3,303,135	-				-1.6
3,303,135	-				+1.4