Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07455

Experiment: R2A_PIPES with Cadmium chloride 64 uM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Cadmium chloride 64 uM
1,630,462	+		LRK55_RS07450	0.47	-0.1
1,630,462	+		LRK55_RS07450	0.47	-0.4
1,630,462	+		LRK55_RS07450	0.47	+0.7
1,630,462	+		LRK55_RS07450	0.47	-0.2
1,630,463	-		LRK55_RS07450	0.47	-2.5
1,630,463	-		LRK55_RS07450	0.47	-2.2
1,630,463	-		LRK55_RS07450	0.47	+0.8
1,630,463	-		LRK55_RS07450	0.47	+0.8
1,630,463	-		LRK55_RS07450	0.47	+0.2
1,630,463	-		LRK55_RS07450	0.47	-0.2
1,630,501	+		LRK55_RS07450	0.49	+1.0
1,630,502	-		LRK55_RS07450	0.49	+0.1
1,630,648	+		LRK55_RS07450	0.58	-0.5
1,630,648	+		LRK55_RS07450	0.58	-1.3
1,630,648	+		LRK55_RS07450	0.58	+1.0
1,630,649	-		LRK55_RS07450	0.59	-0.3
1,630,649	-		LRK55_RS07450	0.59	-1.7
1,630,649	-		LRK55_RS07450	0.59	-3.8
1,630,649	-		LRK55_RS07450	0.59	-0.4
1,630,649	-		LRK55_RS07450	0.59	-2.8
1,630,666	+		LRK55_RS07450	0.60	-3.2
1,630,666	+		LRK55_RS07450	0.60	+0.4
1,630,666	+		LRK55_RS07450	0.60	-1.6
1,630,666	+		LRK55_RS07450	0.60	-0.4
1,630,667	-		LRK55_RS07450	0.60	+0.2
1,630,667	-		LRK55_RS07450	0.60	-1.3
1,630,690	+		LRK55_RS07450	0.61	-3.2
1,630,690	+		LRK55_RS07450	0.61	-3.0
1,630,691	-		LRK55_RS07450	0.61	+0.9
1,630,691	-		LRK55_RS07450	0.61	+1.0
1,630,691	-		LRK55_RS07450	0.61	+1.2
1,630,750	+		LRK55_RS07450	0.65	-1.6
1,630,751	-		LRK55_RS07450	0.65	-1.8
1,630,879	+		LRK55_RS07450	0.73	-3.2
1,630,880	-		LRK55_RS07450	0.73	-0.4
1,630,880	-		LRK55_RS07450	0.73	+0.8
1,630,880	-		LRK55_RS07450	0.73	+0.7
1,630,880	-		LRK55_RS07450	0.73	+1.4
1,631,003	-		LRK55_RS07450	0.81	-0.4
1,631,003	-		LRK55_RS07450	0.81	-2.1
1,631,003	-		LRK55_RS07450	0.81	+1.0
1,631,003	-		LRK55_RS07450	0.81	+0.2
1,631,003	-		LRK55_RS07450	0.81	-0.0
1,631,003	-		LRK55_RS07450	0.81	+0.6
1,631,003	-		LRK55_RS07450	0.81	-1.1
1,631,003	-		LRK55_RS07450	0.81	+0.6
1,631,003	-		LRK55_RS07450	0.81	+2.3
1,631,003	-		LRK55_RS07450	0.81	+0.7
1,631,050	+		LRK55_RS07450	0.84	-3.5
1,631,050	+		LRK55_RS07450	0.84	-0.1
1,631,059	+		LRK55_RS07450	0.84	-3.4
1,631,059	+		LRK55_RS07450	0.84	+1.3
1,631,059	+		LRK55_RS07450	0.84	-1.8
1,631,060	-		LRK55_RS07450	0.84	-1.0
1,631,060	-		LRK55_RS07450	0.84	+2.3
1,631,060	-		LRK55_RS07450	0.84	-0.4
1,631,060	-		LRK55_RS07450	0.84	-0.8
1,631,060	-		LRK55_RS07450	0.84	-1.4
1,631,060	-		LRK55_RS07450	0.84	+0.1
1,631,134	+		LRK55_RS07450	0.89	+0.4
1,631,134	+		LRK55_RS07450	0.89	-2.5
1,631,134	+		LRK55_RS07450	0.89	-0.9
1,631,134	+		LRK55_RS07450	0.89	-2.4
1,631,135	-		LRK55_RS07450	0.89	-0.7
1,631,135	-		LRK55_RS07450	0.89	-0.9
1,631,135	-		LRK55_RS07450	0.89	+1.0
1,631,135	-		LRK55_RS07450	0.89	-0.1
1,631,328	+				-1.8
1,631,328	+				+0.8
1,631,328	+				+0.8
1,631,328	+				-0.9
1,631,329	-				-2.4
1,631,363	+				+0.8
1,631,363	+				-0.9
1,631,363	+				-1.8
1,631,363	+				-0.2
1,631,363	+				+0.1
1,631,363	+				-2.0
1,631,364	-				-1.2
1,631,364	-				+1.3
1,631,364	-				-0.3
1,631,364	-				+0.1
1,631,364	-				-1.6
1,631,364	-				+1.3
1,631,364	-				-0.7
1,631,364	-				+1.7
1,631,364	-				+1.2
1,631,364	-				+0.8
1,631,587	+		LRK55_RS07455	0.21	+1.0
1,631,587	+		LRK55_RS07455	0.21	-0.6
1,631,587	+		LRK55_RS07455	0.21	+0.3
1,631,587	+		LRK55_RS07455	0.21	+2.3
1,631,587	+		LRK55_RS07455	0.21	+0.5
1,631,588	-		LRK55_RS07455	0.21	-1.2
1,631,588	-		LRK55_RS07455	0.21	-1.1
1,631,588	-		LRK55_RS07455	0.21	+0.9
1,631,588	-		LRK55_RS07455	0.21	-0.2
1,631,588	-		LRK55_RS07455	0.21	+0.5
1,631,806	-		LRK55_RS07455	0.47	-2.8
1,632,153	+		LRK55_RS07455	0.87	+0.2
1,632,154	-		LRK55_RS07455	0.87	-2.6
1,632,154	-		LRK55_RS07455	0.87	+1.6
1,632,154	-		LRK55_RS07455	0.87	+1.9
1,632,156	+		LRK55_RS07455	0.87	-2.7
1,632,157	+		LRK55_RS07455	0.88	+2.2
1,632,157	+		LRK55_RS07455	0.88	+0.6
1,632,157	+		LRK55_RS07455	0.88	-0.1
1,632,157	+		LRK55_RS07455	0.88	-0.4
1,632,157	+		LRK55_RS07455	0.88	-1.4
1,632,158	-		LRK55_RS07455	0.88	+1.4
1,632,158	-		LRK55_RS07455	0.88	-0.1
1,632,158	-		LRK55_RS07455	0.88	+2.4
1,632,158	-		LRK55_RS07455	0.88	-2.4
1,632,158	-		LRK55_RS07455	0.88	+0.1
1,632,158	-		LRK55_RS07455	0.88	-0.4
1,632,158	-		LRK55_RS07455	0.88	-0.2
1,632,158	-		LRK55_RS07455	0.88	+0.5
1,632,158	-		LRK55_RS07455	0.88	+1.0
1,632,158	-		LRK55_RS07455	0.88	-3.6
1,632,158	-		LRK55_RS07455	0.88	-0.8
1,632,158	-		LRK55_RS07455	0.88	+0.9
1,632,158	-		LRK55_RS07455	0.88	-1.7
1,632,158	-		LRK55_RS07455	0.88	-1.1
1,632,252	+				-0.1
1,632,252	+				-0.6
1,632,252	+				+0.9
1,632,253	-				-1.3
1,632,253	-				+0.5
1,632,253	-				+0.9
1,632,253	-				+0.2
1,632,253	-				+0.3
1,632,253	-				+0.8
1,632,253	-				+0.8
1,632,254	+				+1.7
1,632,256	+				-0.9
1,632,256	+				-0.1
1,632,256	+				-0.5
1,632,256	+				-0.1
1,632,256	+				-2.0
1,632,256	+				-0.4
1,632,256	+				+0.5
1,632,256	+				+1.9
1,632,257	-				+1.8
1,632,257	-				-1.7
1,632,257	-				-2.7
1,632,257	-				+0.5
1,632,257	-				+1.2
1,632,257	-				+0.6
1,632,257	-				+1.4
1,632,257	-				+1.9
1,632,257	-				-0.5
1,632,343	+				+0.6
1,632,343	+				+2.5
1,632,343	+				-0.2
1,632,344	-				-0.5
1,632,562	+		LRK55_RS07460	0.28	-0.1
1,632,562	+		LRK55_RS07460	0.28	-0.3
1,632,562	+		LRK55_RS07460	0.28	+0.2
1,632,562	+		LRK55_RS07460	0.28	+1.9
1,632,562	+		LRK55_RS07460	0.28	-0.4
1,632,563	-		LRK55_RS07460	0.29	+1.2
1,632,563	-		LRK55_RS07460	0.29	-0.8
1,632,626	-		LRK55_RS07460	0.36	+0.8
1,632,674	-		LRK55_RS07460	0.41	+0.4
1,632,743	+		LRK55_RS07460	0.49	+2.7
1,632,790	+		LRK55_RS07460	0.55	+0.5
1,632,791	-		LRK55_RS07460	0.55	+0.5
1,632,937	+		LRK55_RS07460	0.72	+2.1
1,632,937	+		LRK55_RS07460	0.72	+0.0
1,632,938	-		LRK55_RS07460	0.72	-0.8
1,632,938	-		LRK55_RS07460	0.72	+0.9
1,632,938	-		LRK55_RS07460	0.72	-0.1
1,633,126	+				+0.5
1,633,126	+				+1.3
1,633,126	+				+0.8
1,633,126	+				-0.8
1,633,126	+				-1.1
1,633,127	-				+0.6
1,633,127	-				+1.3
1,633,127	-				-0.4
1,633,127	-				+2.0