Experiment: R2A_PIPES with Cadmium chloride 64 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS04555 and LRK55_RS04560 are separated by 2 nucleotides LRK55_RS04560 and LRK55_RS04565 are separated by 2 nucleotides LRK55_RS04565 and LRK55_RS04570 are separated by 10 nucleotides LRK55_RS04570 and LRK55_RS04575 are separated by 27 nucleotides LRK55_RS04575 and LRK55_RS04580 are separated by 107 nucleotides
LRK55_RS04555: LRK55_RS04555 - heterodisulfide reductase-related iron-sulfur binding cluster, at 970,591 to 971,934
_RS04555
LRK55_RS04560: LRK55_RS04560 - DUF3501 family protein, at 971,937 to 972,518
_RS04560
LRK55_RS04565: LRK55_RS04565 - hypothetical protein, at 972,521 to 973,120
_RS04565
LRK55_RS04570: LRK55_RS04570 - adenine phosphoribosyltransferase, at 973,131 to 973,649
_RS04570
LRK55_RS04575: LRK55_RS04575 - DUF2007 domain-containing protein, at 973,677 to 973,949
_RS04575
LRK55_RS04580: LRK55_RS04580 - glutamine--tRNA ligase/YqeY domain fusion protein, at 974,057 to 975,832
_RS04580
Position (kb) 972
973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 971.522 kb on + strand, within LRK55_RS04555 at 971.552 kb on - strand, within LRK55_RS04555 at 971.740 kb on + strand, within LRK55_RS04555 at 971.740 kb on + strand, within LRK55_RS04555 at 971.740 kb on + strand, within LRK55_RS04555 at 971.741 kb on - strand, within LRK55_RS04555 at 971.741 kb on - strand, within LRK55_RS04555 at 971.761 kb on + strand, within LRK55_RS04555 at 971.761 kb on + strand, within LRK55_RS04555 at 971.762 kb on - strand, within LRK55_RS04555 at 971.762 kb on - strand, within LRK55_RS04555 at 971.762 kb on - strand, within LRK55_RS04555 at 971.762 kb on - strand, within LRK55_RS04555 at 971.762 kb on - strand, within LRK55_RS04555 at 971.924 kb on - strand at 971.979 kb on + strand at 971.979 kb on + strand at 971.979 kb on + strand at 971.979 kb on + strand at 972.165 kb on + strand, within LRK55_RS04560 at 972.165 kb on + strand, within LRK55_RS04560 at 972.166 kb on - strand, within LRK55_RS04560 at 972.166 kb on - strand, within LRK55_RS04560 at 972.555 kb on + strand at 972.555 kb on + strand at 972.555 kb on + strand at 972.615 kb on + strand, within LRK55_RS04565 at 972.630 kb on + strand, within LRK55_RS04565 at 972.740 kb on + strand, within LRK55_RS04565 at 972.740 kb on + strand, within LRK55_RS04565 at 972.854 kb on + strand, within LRK55_RS04565 at 972.854 kb on + strand, within LRK55_RS04565 at 972.854 kb on + strand, within LRK55_RS04565 at 972.854 kb on + strand, within LRK55_RS04565 at 972.854 kb on + strand, within LRK55_RS04565 at 972.854 kb on + strand, within LRK55_RS04565 at 972.855 kb on - strand, within LRK55_RS04565 at 972.855 kb on - strand, within LRK55_RS04565 at 972.855 kb on - strand, within LRK55_RS04565 at 972.857 kb on + strand, within LRK55_RS04565 at 972.857 kb on + strand, within LRK55_RS04565 at 972.857 kb on + strand, within LRK55_RS04565 at 972.858 kb on - strand, within LRK55_RS04565 at 972.858 kb on - strand, within LRK55_RS04565 at 972.858 kb on - strand, within LRK55_RS04565 at 973.088 kb on + strand at 973.088 kb on + strand at 973.088 kb on + strand at 973.088 kb on + strand at 973.088 kb on + strand at 973.088 kb on + strand at 973.089 kb on - strand at 973.089 kb on - strand at 973.089 kb on - strand at 973.089 kb on - strand at 973.136 kb on - strand at 973.360 kb on + strand, within LRK55_RS04570 at 973.372 kb on + strand, within LRK55_RS04570 at 973.372 kb on + strand, within LRK55_RS04570 at 973.372 kb on + strand, within LRK55_RS04570 at 973.373 kb on - strand, within LRK55_RS04570 at 973.373 kb on - strand, within LRK55_RS04570 at 973.373 kb on - strand, within LRK55_RS04570 at 973.373 kb on - strand, within LRK55_RS04570 at 973.373 kb on - strand, within LRK55_RS04570 at 973.813 kb on + strand, within LRK55_RS04575 at 973.813 kb on + strand, within LRK55_RS04575 at 973.813 kb on + strand, within LRK55_RS04575 at 973.813 kb on + strand, within LRK55_RS04575 at 973.813 kb on + strand, within LRK55_RS04575 at 973.813 kb on + strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.814 kb on - strand, within LRK55_RS04575 at 973.852 kb on + strand, within LRK55_RS04575 at 973.852 kb on + strand, within LRK55_RS04575 at 973.853 kb on - strand, within LRK55_RS04575 at 973.853 kb on - strand, within LRK55_RS04575 at 973.853 kb on - strand, within LRK55_RS04575 at 973.853 kb on - strand, within LRK55_RS04575 at 973.937 kb on - strand at 973.943 kb on + strand at 973.943 kb on + strand at 973.944 kb on - strand at 973.944 kb on - strand at 974.015 kb on + strand at 974.015 kb on + strand at 974.016 kb on - strand at 974.016 kb on - strand at 974.016 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM remove 971,522 + LRK55_RS04555 0.69 +0.7 971,552 - LRK55_RS04555 0.72 +0.8 971,740 + LRK55_RS04555 0.85 +2.2 971,740 + LRK55_RS04555 0.85 +1.7 971,740 + LRK55_RS04555 0.85 +1.2 971,741 - LRK55_RS04555 0.86 +1.3 971,741 - LRK55_RS04555 0.86 -0.5 971,761 + LRK55_RS04555 0.87 -1.0 971,761 + LRK55_RS04555 0.87 -0.4 971,762 - LRK55_RS04555 0.87 -0.4 971,762 - LRK55_RS04555 0.87 +2.4 971,762 - LRK55_RS04555 0.87 -2.9 971,762 - LRK55_RS04555 0.87 -2.0 971,762 - LRK55_RS04555 0.87 +0.9 971,924 - -0.7 971,979 + +0.1 971,979 + -1.2 971,979 + -1.2 971,979 + +1.0 972,165 + LRK55_RS04560 0.39 -3.0 972,165 + LRK55_RS04560 0.39 +1.4 972,166 - LRK55_RS04560 0.39 +2.5 972,166 - LRK55_RS04560 0.39 +1.4 972,555 + -2.4 972,555 + -0.0 972,555 + +0.6 972,615 + LRK55_RS04565 0.16 -1.3 972,630 + LRK55_RS04565 0.18 -1.5 972,740 + LRK55_RS04565 0.36 +2.0 972,740 + LRK55_RS04565 0.36 +0.1 972,854 + LRK55_RS04565 0.56 +0.6 972,854 + LRK55_RS04565 0.56 +0.2 972,854 + LRK55_RS04565 0.56 +1.2 972,854 + LRK55_RS04565 0.56 -1.3 972,854 + LRK55_RS04565 0.56 +0.9 972,854 + LRK55_RS04565 0.56 -0.4 972,855 - LRK55_RS04565 0.56 +1.6 972,855 - LRK55_RS04565 0.56 +0.5 972,855 - LRK55_RS04565 0.56 -1.2 972,857 + LRK55_RS04565 0.56 +0.1 972,857 + LRK55_RS04565 0.56 -0.4 972,857 + LRK55_RS04565 0.56 -2.2 972,858 - LRK55_RS04565 0.56 -1.8 972,858 - LRK55_RS04565 0.56 +0.0 972,858 - LRK55_RS04565 0.56 +0.2 973,088 + +0.2 973,088 + +0.2 973,088 + -0.1 973,088 + +1.8 973,088 + -2.2 973,088 + +0.5 973,089 - -0.4 973,089 - -0.4 973,089 - +0.8 973,089 - -0.4 973,136 - -0.5 973,360 + LRK55_RS04570 0.44 -2.2 973,372 + LRK55_RS04570 0.46 -2.6 973,372 + LRK55_RS04570 0.46 -0.8 973,372 + LRK55_RS04570 0.46 -2.5 973,373 - LRK55_RS04570 0.47 +0.4 973,373 - LRK55_RS04570 0.47 +0.4 973,373 - LRK55_RS04570 0.47 -0.4 973,373 - LRK55_RS04570 0.47 -0.4 973,373 - LRK55_RS04570 0.47 -3.0 973,813 + LRK55_RS04575 0.50 +1.1 973,813 + LRK55_RS04575 0.50 +2.0 973,813 + LRK55_RS04575 0.50 -0.2 973,813 + LRK55_RS04575 0.50 +2.2 973,813 + LRK55_RS04575 0.50 +0.5 973,813 + LRK55_RS04575 0.50 +0.6 973,814 - LRK55_RS04575 0.50 -0.3 973,814 - LRK55_RS04575 0.50 -1.2 973,814 - LRK55_RS04575 0.50 -2.0 973,814 - LRK55_RS04575 0.50 -0.3 973,814 - LRK55_RS04575 0.50 -0.3 973,814 - LRK55_RS04575 0.50 +0.7 973,814 - LRK55_RS04575 0.50 +1.3 973,814 - LRK55_RS04575 0.50 +0.7 973,852 + LRK55_RS04575 0.64 -0.9 973,852 + LRK55_RS04575 0.64 +0.3 973,853 - LRK55_RS04575 0.64 -0.4 973,853 - LRK55_RS04575 0.64 -2.4 973,853 - LRK55_RS04575 0.64 +1.0 973,853 - LRK55_RS04575 0.64 -2.9 973,937 - +0.0 973,943 + +0.4 973,943 + +0.9 973,944 - +1.5 973,944 - -1.8 974,015 + +1.2 974,015 + +0.6 974,016 - +2.4 974,016 - +1.4 974,016 - -2.4
Or see this region's nucleotide sequence