Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02100

Experiment: R2A_PIPES with Cadmium chloride 64 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02095 and LRK55_RS02100 overlap by 4 nucleotidesLRK55_RS02100 and LRK55_RS02105 are separated by 61 nucleotides LRK55_RS02095: LRK55_RS02095 - amidohydrolase family protein, at 458,840 to 459,874 _RS02095 LRK55_RS02100: LRK55_RS02100 - hypothetical protein, at 459,871 to 460,389 _RS02100 LRK55_RS02105: LRK55_RS02105 - kynureninase, at 460,451 to 461,746 _RS02105 Position (kb) 459 460 461Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 458.903 kb on + strandat 458.904 kb on - strandat 458.904 kb on - strandat 458.957 kb on + strand, within LRK55_RS02095at 458.957 kb on + strand, within LRK55_RS02095at 458.957 kb on + strand, within LRK55_RS02095at 458.957 kb on + strand, within LRK55_RS02095at 458.957 kb on + strand, within LRK55_RS02095at 458.957 kb on + strand, within LRK55_RS02095at 458.957 kb on + strand, within LRK55_RS02095at 458.957 kb on + strand, within LRK55_RS02095at 458.958 kb on - strand, within LRK55_RS02095at 458.958 kb on - strand, within LRK55_RS02095at 458.958 kb on - strand, within LRK55_RS02095at 458.958 kb on - strand, within LRK55_RS02095at 459.026 kb on + strand, within LRK55_RS02095at 459.027 kb on - strand, within LRK55_RS02095at 459.083 kb on + strand, within LRK55_RS02095at 459.083 kb on + strand, within LRK55_RS02095at 459.171 kb on - strand, within LRK55_RS02095at 459.171 kb on - strand, within LRK55_RS02095at 459.357 kb on + strand, within LRK55_RS02095at 459.357 kb on + strand, within LRK55_RS02095at 459.357 kb on + strand, within LRK55_RS02095at 459.358 kb on - strand, within LRK55_RS02095at 459.358 kb on - strand, within LRK55_RS02095at 459.358 kb on - strand, within LRK55_RS02095at 459.358 kb on - strand, within LRK55_RS02095at 459.398 kb on + strand, within LRK55_RS02095at 459.398 kb on + strand, within LRK55_RS02095at 459.530 kb on + strand, within LRK55_RS02095at 459.530 kb on + strand, within LRK55_RS02095at 459.531 kb on - strand, within LRK55_RS02095at 459.531 kb on - strand, within LRK55_RS02095at 459.531 kb on - strand, within LRK55_RS02095at 459.611 kb on + strand, within LRK55_RS02095at 459.611 kb on + strand, within LRK55_RS02095at 459.612 kb on - strand, within LRK55_RS02095at 459.612 kb on - strand, within LRK55_RS02095at 459.626 kb on + strand, within LRK55_RS02095at 459.626 kb on + strand, within LRK55_RS02095at 459.626 kb on + strand, within LRK55_RS02095at 459.627 kb on - strand, within LRK55_RS02095at 459.666 kb on - strand, within LRK55_RS02095at 459.666 kb on - strand, within LRK55_RS02095at 459.713 kb on + strand, within LRK55_RS02095at 459.714 kb on - strand, within LRK55_RS02095at 460.177 kb on + strand, within LRK55_RS02100at 460.177 kb on + strand, within LRK55_RS02100at 460.178 kb on - strand, within LRK55_RS02100at 460.178 kb on - strand, within LRK55_RS02100at 460.219 kb on + strand, within LRK55_RS02100at 460.219 kb on + strand, within LRK55_RS02100at 460.219 kb on + strand, within LRK55_RS02100at 460.220 kb on - strand, within LRK55_RS02100at 460.220 kb on - strand, within LRK55_RS02100at 460.220 kb on - strand, within LRK55_RS02100at 460.222 kb on - strand, within LRK55_RS02100at 460.252 kb on + strand, within LRK55_RS02100at 460.264 kb on + strand, within LRK55_RS02100at 460.264 kb on + strand, within LRK55_RS02100at 460.264 kb on + strand, within LRK55_RS02100at 460.264 kb on + strand, within LRK55_RS02100at 460.265 kb on - strand, within LRK55_RS02100at 460.265 kb on - strand, within LRK55_RS02100at 460.445 kb on + strandat 460.445 kb on + strandat 460.445 kb on + strandat 460.583 kb on + strand, within LRK55_RS02105at 460.583 kb on + strand, within LRK55_RS02105at 460.583 kb on + strand, within LRK55_RS02105at 460.583 kb on + strand, within LRK55_RS02105at 460.583 kb on + strand, within LRK55_RS02105at 460.583 kb on + strand, within LRK55_RS02105at 460.584 kb on - strand, within LRK55_RS02105at 460.584 kb on - strand, within LRK55_RS02105at 460.584 kb on - strand, within LRK55_RS02105at 460.584 kb on - strand, within LRK55_RS02105at 460.584 kb on - strand, within LRK55_RS02105at 460.652 kb on + strand, within LRK55_RS02105at 460.653 kb on - strand, within LRK55_RS02105at 460.709 kb on + strand, within LRK55_RS02105at 460.710 kb on - strand, within LRK55_RS02105at 460.820 kb on + strand, within LRK55_RS02105at 461.048 kb on + strand, within LRK55_RS02105at 461.048 kb on + strand, within LRK55_RS02105at 461.198 kb on + strand, within LRK55_RS02105at 461.198 kb on + strand, within LRK55_RS02105at 461.198 kb on + strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.199 kb on - strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.204 kb on + strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105at 461.205 kb on - strand, within LRK55_RS02105

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Cadmium chloride 64 uM
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458,903 + +0.8
458,904 - -0.4
458,904 - -0.3
458,957 + LRK55_RS02095 0.11 +1.3
458,957 + LRK55_RS02095 0.11 -0.5
458,957 + LRK55_RS02095 0.11 +0.1
458,957 + LRK55_RS02095 0.11 +0.4
458,957 + LRK55_RS02095 0.11 +0.7
458,957 + LRK55_RS02095 0.11 +2.4
458,957 + LRK55_RS02095 0.11 +0.2
458,957 + LRK55_RS02095 0.11 +1.7
458,958 - LRK55_RS02095 0.11 -0.6
458,958 - LRK55_RS02095 0.11 -0.5
458,958 - LRK55_RS02095 0.11 -2.9
458,958 - LRK55_RS02095 0.11 -1.1
459,026 + LRK55_RS02095 0.18 +0.1
459,027 - LRK55_RS02095 0.18 -2.3
459,083 + LRK55_RS02095 0.23 +0.0
459,083 + LRK55_RS02095 0.23 -1.9
459,171 - LRK55_RS02095 0.32 -1.5
459,171 - LRK55_RS02095 0.32 +0.7
459,357 + LRK55_RS02095 0.50 -1.7
459,357 + LRK55_RS02095 0.50 +1.9
459,357 + LRK55_RS02095 0.50 -2.1
459,358 - LRK55_RS02095 0.50 +1.1
459,358 - LRK55_RS02095 0.50 +0.2
459,358 - LRK55_RS02095 0.50 -1.0
459,358 - LRK55_RS02095 0.50 -2.7
459,398 + LRK55_RS02095 0.54 -0.2
459,398 + LRK55_RS02095 0.54 -3.5
459,530 + LRK55_RS02095 0.67 +2.3
459,530 + LRK55_RS02095 0.67 +1.6
459,531 - LRK55_RS02095 0.67 -1.9
459,531 - LRK55_RS02095 0.67 -1.5
459,531 - LRK55_RS02095 0.67 +1.5
459,611 + LRK55_RS02095 0.74 +1.0
459,611 + LRK55_RS02095 0.74 +0.7
459,612 - LRK55_RS02095 0.75 -0.9
459,612 - LRK55_RS02095 0.75 +1.6
459,626 + LRK55_RS02095 0.76 +1.6
459,626 + LRK55_RS02095 0.76 +1.9
459,626 + LRK55_RS02095 0.76 +0.1
459,627 - LRK55_RS02095 0.76 +1.7
459,666 - LRK55_RS02095 0.80 -1.3
459,666 - LRK55_RS02095 0.80 +1.2
459,713 + LRK55_RS02095 0.84 +0.1
459,714 - LRK55_RS02095 0.84 -0.4
460,177 + LRK55_RS02100 0.59 +0.8
460,177 + LRK55_RS02100 0.59 +1.1
460,178 - LRK55_RS02100 0.59 -0.9
460,178 - LRK55_RS02100 0.59 +1.6
460,219 + LRK55_RS02100 0.67 -0.1
460,219 + LRK55_RS02100 0.67 -1.5
460,219 + LRK55_RS02100 0.67 +0.5
460,220 - LRK55_RS02100 0.67 +1.2
460,220 - LRK55_RS02100 0.67 +2.0
460,220 - LRK55_RS02100 0.67 -3.4
460,222 - LRK55_RS02100 0.68 +0.1
460,252 + LRK55_RS02100 0.73 +0.2
460,264 + LRK55_RS02100 0.76 +0.5
460,264 + LRK55_RS02100 0.76 +0.9
460,264 + LRK55_RS02100 0.76 +0.8
460,264 + LRK55_RS02100 0.76 +0.8
460,265 - LRK55_RS02100 0.76 +0.9
460,265 - LRK55_RS02100 0.76 -1.5
460,445 + +0.3
460,445 + +1.0
460,445 + +0.4
460,583 + LRK55_RS02105 0.10 +0.8
460,583 + LRK55_RS02105 0.10 -0.9
460,583 + LRK55_RS02105 0.10 +0.4
460,583 + LRK55_RS02105 0.10 +0.9
460,583 + LRK55_RS02105 0.10 +1.1
460,583 + LRK55_RS02105 0.10 -2.1
460,584 - LRK55_RS02105 0.10 -1.0
460,584 - LRK55_RS02105 0.10 +1.1
460,584 - LRK55_RS02105 0.10 +1.5
460,584 - LRK55_RS02105 0.10 -2.3
460,584 - LRK55_RS02105 0.10 -0.5
460,652 + LRK55_RS02105 0.16 -1.7
460,653 - LRK55_RS02105 0.16 -0.3
460,709 + LRK55_RS02105 0.20 +0.3
460,710 - LRK55_RS02105 0.20 -0.2
460,820 + LRK55_RS02105 0.28 +2.4
461,048 + LRK55_RS02105 0.46 -0.5
461,048 + LRK55_RS02105 0.46 -0.9
461,198 + LRK55_RS02105 0.58 -2.5
461,198 + LRK55_RS02105 0.58 +0.1
461,198 + LRK55_RS02105 0.58 -0.5
461,199 - LRK55_RS02105 0.58 -3.3
461,199 - LRK55_RS02105 0.58 +1.8
461,199 - LRK55_RS02105 0.58 +0.1
461,199 - LRK55_RS02105 0.58 -3.1
461,199 - LRK55_RS02105 0.58 -1.1
461,204 + LRK55_RS02105 0.58 -0.3
461,204 + LRK55_RS02105 0.58 +1.8
461,204 + LRK55_RS02105 0.58 -0.9
461,204 + LRK55_RS02105 0.58 -0.9
461,204 + LRK55_RS02105 0.58 +0.1
461,205 - LRK55_RS02105 0.58 -0.7
461,205 - LRK55_RS02105 0.58 -1.2
461,205 - LRK55_RS02105 0.58 -0.2
461,205 - LRK55_RS02105 0.58 -2.8
461,205 - LRK55_RS02105 0.58 -2.2
461,205 - LRK55_RS02105 0.58 +0.3

Or see this region's nucleotide sequence