Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18620 and LRK55_RS18625 are separated by 562 nucleotides LRK55_RS18625 and LRK55_RS18630 are separated by 35 nucleotides LRK55_RS18630 and LRK55_RS18635 are separated by 200 nucleotides
LRK55_RS18620: LRK55_RS18620 - DUF3761 domain-containing protein, at 59,044 to 59,652
_RS18620
LRK55_RS18625: LRK55_RS18625 - hypothetical protein, at 60,215 to 60,817
_RS18625
LRK55_RS18630: LRK55_RS18630 - SOS response-associated peptidase, at 60,853 to 61,527
_RS18630
LRK55_RS18635: LRK55_RS18635 - Tn3 family transposase, at 61,728 to 64,697
_RS18635
Position (kb) 60
61 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 59.279 kb on - strand, within LRK55_RS18620 at 59.369 kb on + strand, within LRK55_RS18620 at 59.370 kb on - strand, within LRK55_RS18620 at 59.422 kb on + strand, within LRK55_RS18620 at 59.422 kb on + strand, within LRK55_RS18620 at 59.422 kb on + strand, within LRK55_RS18620 at 59.423 kb on - strand, within LRK55_RS18620 at 59.423 kb on - strand, within LRK55_RS18620 at 59.467 kb on + strand, within LRK55_RS18620 at 59.522 kb on + strand, within LRK55_RS18620 at 59.667 kb on + strand at 59.697 kb on + strand at 59.698 kb on - strand at 59.698 kb on - strand at 59.698 kb on - strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.710 kb on - strand at 59.710 kb on - strand at 59.710 kb on - strand at 59.711 kb on + strand at 59.711 kb on + strand at 59.712 kb on - strand at 59.712 kb on - strand at 59.723 kb on - strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.751 kb on + strand at 59.752 kb on - strand at 59.752 kb on - strand at 59.752 kb on - strand at 59.752 kb on - strand at 59.759 kb on - strand at 59.859 kb on + strand at 59.859 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.911 kb on + strand at 59.913 kb on + strand at 59.977 kb on + strand at 59.978 kb on - strand at 59.978 kb on - strand at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.287 kb on + strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.288 kb on - strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.347 kb on + strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.348 kb on - strand, within LRK55_RS18625 at 60.560 kb on + strand, within LRK55_RS18625 at 60.656 kb on + strand, within LRK55_RS18625 at 60.656 kb on + strand, within LRK55_RS18625 at 60.656 kb on + strand, within LRK55_RS18625 at 60.657 kb on - strand, within LRK55_RS18625 at 60.657 kb on - strand, within LRK55_RS18625 at 60.657 kb on - strand, within LRK55_RS18625 at 60.657 kb on - strand, within LRK55_RS18625 at 60.657 kb on - strand, within LRK55_RS18625 at 60.732 kb on + strand, within LRK55_RS18625 at 60.732 kb on + strand, within LRK55_RS18625 at 60.748 kb on + strand, within LRK55_RS18625 at 60.748 kb on + strand, within LRK55_RS18625 at 60.749 kb on - strand, within LRK55_RS18625 at 60.749 kb on - strand, within LRK55_RS18625 at 60.840 kb on + strand at 60.840 kb on + strand at 60.840 kb on + strand at 60.840 kb on + strand at 60.881 kb on + strand at 60.881 kb on + strand at 60.882 kb on - strand at 60.882 kb on - strand at 60.946 kb on + strand, within LRK55_RS18630 at 60.947 kb on - strand, within LRK55_RS18630 at 61.063 kb on + strand, within LRK55_RS18630 at 61.162 kb on + strand, within LRK55_RS18630 at 61.162 kb on + strand, within LRK55_RS18630 at 61.162 kb on + strand, within LRK55_RS18630 at 61.162 kb on + strand, within LRK55_RS18630 at 61.162 kb on + strand, within LRK55_RS18630 at 61.162 kb on + strand, within LRK55_RS18630 at 61.163 kb on - strand, within LRK55_RS18630 at 61.163 kb on - strand, within LRK55_RS18630 at 61.163 kb on - strand, within LRK55_RS18630 at 61.163 kb on - strand, within LRK55_RS18630 at 61.163 kb on - strand, within LRK55_RS18630 at 61.163 kb on - strand, within LRK55_RS18630 at 61.198 kb on + strand, within LRK55_RS18630 at 61.198 kb on + strand, within LRK55_RS18630 at 61.198 kb on + strand, within LRK55_RS18630 at 61.199 kb on - strand, within LRK55_RS18630 at 61.201 kb on + strand, within LRK55_RS18630 at 61.201 kb on + strand, within LRK55_RS18630 at 61.201 kb on + strand, within LRK55_RS18630 at 61.201 kb on + strand, within LRK55_RS18630 at 61.201 kb on + strand, within LRK55_RS18630 at 61.201 kb on + strand, within LRK55_RS18630 at 61.202 kb on - strand, within LRK55_RS18630 at 61.202 kb on - strand, within LRK55_RS18630 at 61.202 kb on - strand, within LRK55_RS18630 at 61.202 kb on - strand, within LRK55_RS18630 at 61.202 kb on - strand, within LRK55_RS18630 at 61.202 kb on - strand, within LRK55_RS18630 at 61.202 kb on - strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.381 kb on + strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.382 kb on - strand, within LRK55_RS18630 at 61.525 kb on + strand at 61.526 kb on - strand at 61.526 kb on - strand at 61.526 kb on - strand at 61.555 kb on - strand at 61.555 kb on - strand at 61.555 kb on - strand at 61.555 kb on - strand at 61.658 kb on + strand at 61.658 kb on + strand at 61.659 kb on - strand at 61.659 kb on - strand at 61.659 kb on - strand at 61.659 kb on - strand at 61.659 kb on - strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.661 kb on + strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.662 kb on - strand at 61.715 kb on + strand at 61.715 kb on + strand at 61.716 kb on - strand at 61.716 kb on - strand at 61.716 kb on - strand at 61.716 kb on - strand at 61.729 kb on + strand at 61.729 kb on + strand at 61.730 kb on - strand at 61.737 kb on - strand at 61.768 kb on + strand at 61.789 kb on + strand at 61.789 kb on + strand at 61.789 kb on + strand at 61.789 kb on + strand at 61.790 kb on - strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.808 kb on + strand at 61.809 kb on - strand at 61.809 kb on - strand at 61.809 kb on - strand at 61.809 kb on - strand at 61.809 kb on - strand at 61.809 kb on - strand at 61.809 kb on - strand at 61.809 kb on - strand at 61.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM remove 59,279 - LRK55_RS18620 0.39 +1.9 59,369 + LRK55_RS18620 0.53 -1.1 59,370 - LRK55_RS18620 0.54 -1.9 59,422 + LRK55_RS18620 0.62 +0.6 59,422 + LRK55_RS18620 0.62 -0.3 59,422 + LRK55_RS18620 0.62 +0.2 59,423 - LRK55_RS18620 0.62 -0.7 59,423 - LRK55_RS18620 0.62 -0.7 59,467 + LRK55_RS18620 0.69 +0.1 59,522 + LRK55_RS18620 0.78 -0.2 59,667 + -0.2 59,697 + -0.7 59,698 - +0.1 59,698 - -0.1 59,698 - +1.3 59,709 + -0.2 59,709 + +0.7 59,709 + -0.1 59,709 + +0.3 59,710 - +2.2 59,710 - -1.2 59,710 - -0.4 59,711 + +0.9 59,711 + +0.9 59,712 - -0.8 59,712 - -1.7 59,723 - +0.3 59,751 + -1.0 59,751 + -0.4 59,751 + +0.1 59,751 + +0.3 59,751 + +1.1 59,751 + +1.6 59,752 - +0.7 59,752 - -0.2 59,752 - -1.0 59,752 - -0.0 59,759 - +1.0 59,859 + +0.5 59,859 + +0.6 59,911 + -0.2 59,911 + +0.4 59,911 + +1.0 59,911 + +0.3 59,911 + +0.9 59,911 + +0.6 59,913 + -0.4 59,977 + +0.5 59,978 - -0.8 59,978 - +1.0 60,287 + LRK55_RS18625 0.12 -0.2 60,287 + LRK55_RS18625 0.12 +0.2 60,287 + LRK55_RS18625 0.12 -0.8 60,287 + LRK55_RS18625 0.12 +0.4 60,287 + LRK55_RS18625 0.12 +0.8 60,287 + LRK55_RS18625 0.12 -2.2 60,287 + LRK55_RS18625 0.12 -0.8 60,287 + LRK55_RS18625 0.12 -0.0 60,287 + LRK55_RS18625 0.12 +0.0 60,288 - LRK55_RS18625 0.12 +1.1 60,288 - LRK55_RS18625 0.12 +1.0 60,288 - LRK55_RS18625 0.12 -0.2 60,288 - LRK55_RS18625 0.12 +0.6 60,288 - LRK55_RS18625 0.12 -1.4 60,288 - LRK55_RS18625 0.12 +0.7 60,288 - LRK55_RS18625 0.12 +1.9 60,288 - LRK55_RS18625 0.12 +0.5 60,288 - LRK55_RS18625 0.12 -0.2 60,288 - LRK55_RS18625 0.12 -0.2 60,288 - LRK55_RS18625 0.12 +0.1 60,347 + LRK55_RS18625 0.22 -0.0 60,347 + LRK55_RS18625 0.22 -0.3 60,347 + LRK55_RS18625 0.22 +0.5 60,347 + LRK55_RS18625 0.22 +0.5 60,347 + LRK55_RS18625 0.22 +0.4 60,347 + LRK55_RS18625 0.22 +1.8 60,347 + LRK55_RS18625 0.22 +0.4 60,347 + LRK55_RS18625 0.22 +0.1 60,347 + LRK55_RS18625 0.22 +1.0 60,348 - LRK55_RS18625 0.22 -0.1 60,348 - LRK55_RS18625 0.22 +1.8 60,348 - LRK55_RS18625 0.22 -0.2 60,348 - LRK55_RS18625 0.22 +0.2 60,348 - LRK55_RS18625 0.22 -0.8 60,348 - LRK55_RS18625 0.22 +0.0 60,348 - LRK55_RS18625 0.22 -0.7 60,348 - LRK55_RS18625 0.22 +0.6 60,348 - LRK55_RS18625 0.22 +0.5 60,348 - LRK55_RS18625 0.22 -0.3 60,348 - LRK55_RS18625 0.22 -0.3 60,348 - LRK55_RS18625 0.22 -1.1 60,560 + LRK55_RS18625 0.57 -0.5 60,656 + LRK55_RS18625 0.73 -1.8 60,656 + LRK55_RS18625 0.73 +0.2 60,656 + LRK55_RS18625 0.73 +0.3 60,657 - LRK55_RS18625 0.73 -0.9 60,657 - LRK55_RS18625 0.73 +0.6 60,657 - LRK55_RS18625 0.73 +0.2 60,657 - LRK55_RS18625 0.73 -1.0 60,657 - LRK55_RS18625 0.73 +0.1 60,732 + LRK55_RS18625 0.86 +3.4 60,732 + LRK55_RS18625 0.86 +0.1 60,748 + LRK55_RS18625 0.88 -1.0 60,748 + LRK55_RS18625 0.88 +0.4 60,749 - LRK55_RS18625 0.89 +1.0 60,749 - LRK55_RS18625 0.89 -0.2 60,840 + +0.2 60,840 + -0.7 60,840 + +1.3 60,840 + -1.0 60,881 + -0.2 60,881 + +2.6 60,882 - +2.6 60,882 - -0.3 60,946 + LRK55_RS18630 0.14 +1.8 60,947 - LRK55_RS18630 0.14 +0.4 61,063 + LRK55_RS18630 0.31 +0.0 61,162 + LRK55_RS18630 0.46 -1.5 61,162 + LRK55_RS18630 0.46 +3.1 61,162 + LRK55_RS18630 0.46 -0.9 61,162 + LRK55_RS18630 0.46 +0.0 61,162 + LRK55_RS18630 0.46 +1.7 61,162 + LRK55_RS18630 0.46 -1.5 61,163 - LRK55_RS18630 0.46 -0.0 61,163 - LRK55_RS18630 0.46 -2.0 61,163 - LRK55_RS18630 0.46 -0.2 61,163 - LRK55_RS18630 0.46 +0.3 61,163 - LRK55_RS18630 0.46 -1.2 61,163 - LRK55_RS18630 0.46 +1.8 61,198 + LRK55_RS18630 0.51 +0.5 61,198 + LRK55_RS18630 0.51 +0.4 61,198 + LRK55_RS18630 0.51 -0.5 61,199 - LRK55_RS18630 0.51 +0.8 61,201 + LRK55_RS18630 0.52 +1.0 61,201 + LRK55_RS18630 0.52 -0.6 61,201 + LRK55_RS18630 0.52 +0.8 61,201 + LRK55_RS18630 0.52 -1.2 61,201 + LRK55_RS18630 0.52 +0.0 61,201 + LRK55_RS18630 0.52 +0.4 61,202 - LRK55_RS18630 0.52 +0.5 61,202 - LRK55_RS18630 0.52 +0.3 61,202 - LRK55_RS18630 0.52 -0.8 61,202 - LRK55_RS18630 0.52 +0.4 61,202 - LRK55_RS18630 0.52 -0.0 61,202 - LRK55_RS18630 0.52 +0.7 61,202 - LRK55_RS18630 0.52 +0.2 61,381 + LRK55_RS18630 0.78 +0.3 61,381 + LRK55_RS18630 0.78 +0.4 61,381 + LRK55_RS18630 0.78 +0.3 61,381 + LRK55_RS18630 0.78 -0.7 61,381 + LRK55_RS18630 0.78 -0.2 61,381 + LRK55_RS18630 0.78 +0.4 61,381 + LRK55_RS18630 0.78 -0.6 61,381 + LRK55_RS18630 0.78 +0.9 61,381 + LRK55_RS18630 0.78 -1.5 61,382 - LRK55_RS18630 0.78 +0.5 61,382 - LRK55_RS18630 0.78 -0.1 61,382 - LRK55_RS18630 0.78 -0.3 61,382 - LRK55_RS18630 0.78 -1.1 61,382 - LRK55_RS18630 0.78 +0.6 61,382 - LRK55_RS18630 0.78 -0.5 61,382 - LRK55_RS18630 0.78 +0.0 61,382 - LRK55_RS18630 0.78 -1.2 61,382 - LRK55_RS18630 0.78 +0.4 61,382 - LRK55_RS18630 0.78 -0.6 61,382 - LRK55_RS18630 0.78 -0.1 61,382 - LRK55_RS18630 0.78 +0.3 61,382 - LRK55_RS18630 0.78 -0.8 61,525 + -0.5 61,526 - +1.8 61,526 - -2.0 61,526 - +0.1 61,555 - +0.5 61,555 - +0.7 61,555 - -0.2 61,555 - +0.7 61,658 + +0.3 61,658 + -1.2 61,659 - +0.3 61,659 - -1.1 61,659 - -1.9 61,659 - -0.0 61,659 - +0.1 61,661 + -0.2 61,661 + -0.9 61,661 + -1.2 61,661 + +0.8 61,661 + -0.3 61,661 + +0.6 61,661 + +0.2 61,661 + -1.7 61,661 + +0.1 61,661 + -0.8 61,661 + +0.8 61,661 + +0.5 61,661 + +0.2 61,661 + +0.3 61,662 - +0.6 61,662 - +0.7 61,662 - +0.1 61,662 - -1.0 61,662 - -0.6 61,662 - -1.0 61,662 - -0.1 61,662 - -0.2 61,662 - +0.1 61,662 - -0.1 61,662 - +1.2 61,715 + -0.3 61,715 + +0.4 61,716 - -2.0 61,716 - -1.2 61,716 - -0.3 61,716 - -0.2 61,729 + -0.0 61,729 + -1.0 61,730 - -0.2 61,737 - -0.1 61,768 + -0.8 61,789 + -0.2 61,789 + -0.5 61,789 + +0.1 61,789 + -0.2 61,790 - +0.8 61,808 + -0.8 61,808 + -0.7 61,808 + +0.2 61,808 + +0.2 61,808 + -0.5 61,808 + -0.1 61,808 + +0.3 61,808 + -0.9 61,808 + -1.4 61,808 + -3.3 61,808 + +0.2 61,808 + +0.7 61,808 + +0.2 61,808 + -1.2 61,808 + -1.1 61,808 + +0.6 61,809 - -0.7 61,809 - -0.2 61,809 - -3.0 61,809 - -0.0 61,809 - -0.3 61,809 - -0.5 61,809 - +0.8 61,809 - -1.7 61,809 - +0.0
Or see this region's nucleotide sequence