Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS15875

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
3,467,756	+		LRK55_RS15870	0.28	-0.4
3,467,756	+		LRK55_RS15870	0.28	+0.5
3,467,756	+		LRK55_RS15870	0.28	+0.1
3,467,756	+		LRK55_RS15870	0.28	-0.1
3,467,756	+		LRK55_RS15870	0.28	-1.8
3,467,756	+		LRK55_RS15870	0.28	-0.6
3,467,757	-		LRK55_RS15870	0.28	-1.1
3,467,757	-		LRK55_RS15870	0.28	+1.1
3,467,774	+		LRK55_RS15870	0.29	+0.8
3,467,936	+		LRK55_RS15870	0.43	-0.6
3,467,936	+		LRK55_RS15870	0.43	+0.5
3,467,937	-		LRK55_RS15870	0.43	+2.1
3,467,954	+		LRK55_RS15870	0.44	-0.3
3,467,954	+		LRK55_RS15870	0.44	-0.9
3,467,954	+		LRK55_RS15870	0.44	+1.5
3,467,954	+		LRK55_RS15870	0.44	-2.1
3,467,954	+		LRK55_RS15870	0.44	-1.6
3,467,954	+		LRK55_RS15870	0.44	+2.1
3,467,955	-		LRK55_RS15870	0.44	-1.4
3,467,955	-		LRK55_RS15870	0.44	+0.0
3,467,955	-		LRK55_RS15870	0.44	-0.1
3,467,955	-		LRK55_RS15870	0.44	+0.6
3,467,955	-		LRK55_RS15870	0.44	-0.5
3,467,955	-		LRK55_RS15870	0.44	-2.0
3,468,443	+		LRK55_RS15870	0.85	-1.5
3,468,443	+		LRK55_RS15870	0.85	-1.5
3,468,444	-		LRK55_RS15870	0.85	+0.5
3,468,444	-		LRK55_RS15870	0.85	+0.5
3,468,444	-		LRK55_RS15870	0.85	+1.5
3,468,444	-		LRK55_RS15870	0.85	-0.3
3,468,444	-		LRK55_RS15870	0.85	-0.9
3,468,444	-		LRK55_RS15870	0.85	-0.5
3,468,444	-		LRK55_RS15870	0.85	-0.8
3,468,444	-		LRK55_RS15870	0.85	+0.2
3,468,688	-				+1.1
3,468,813	-		LRK55_RS15875	0.13	-1.0
3,468,963	+		LRK55_RS15875	0.24	-0.3
3,468,963	+		LRK55_RS15875	0.24	-0.1
3,468,963	+		LRK55_RS15875	0.24	-0.7
3,468,963	+		LRK55_RS15875	0.24	+1.5
3,468,963	+		LRK55_RS15875	0.24	-0.8
3,468,964	-		LRK55_RS15875	0.24	+0.6
3,468,964	-		LRK55_RS15875	0.24	-0.3
3,468,964	-		LRK55_RS15875	0.24	+0.4
3,468,964	-		LRK55_RS15875	0.24	+0.1
3,468,964	-		LRK55_RS15875	0.24	+0.6
3,468,964	-		LRK55_RS15875	0.24	-0.7
3,468,964	-		LRK55_RS15875	0.24	-0.1
3,468,964	-		LRK55_RS15875	0.24	-1.7
3,468,964	-		LRK55_RS15875	0.24	-0.0
3,469,005	+		LRK55_RS15875	0.26	-1.6
3,469,005	+		LRK55_RS15875	0.26	-0.7
3,469,005	+		LRK55_RS15875	0.26	+0.5
3,469,006	-		LRK55_RS15875	0.27	-1.3
3,469,006	-		LRK55_RS15875	0.27	+0.2
3,469,006	-		LRK55_RS15875	0.27	-1.0
3,469,006	-		LRK55_RS15875	0.27	-0.8
3,469,006	-		LRK55_RS15875	0.27	-0.6
3,469,006	-		LRK55_RS15875	0.27	-1.4
3,469,325	+		LRK55_RS15875	0.48	-0.4
3,469,325	+		LRK55_RS15875	0.48	+0.2
3,469,542	+		LRK55_RS15875	0.63	+0.5
3,469,542	+		LRK55_RS15875	0.63	+1.4
3,469,542	+		LRK55_RS15875	0.63	+0.4
3,469,542	+		LRK55_RS15875	0.63	-0.4
3,469,542	+		LRK55_RS15875	0.63	-0.4
3,469,542	+		LRK55_RS15875	0.63	-1.7
3,469,542	+		LRK55_RS15875	0.63	+0.1
3,469,542	+		LRK55_RS15875	0.63	+1.0
3,469,542	+		LRK55_RS15875	0.63	+0.0
3,469,542	+		LRK55_RS15875	0.63	+1.5
3,469,542	+		LRK55_RS15875	0.63	+0.5
3,469,543	-		LRK55_RS15875	0.63	+1.4
3,469,543	-		LRK55_RS15875	0.63	-0.0
3,469,543	-		LRK55_RS15875	0.63	-1.1
3,469,543	-		LRK55_RS15875	0.63	-0.4
3,469,543	-		LRK55_RS15875	0.63	+0.1
3,469,543	-		LRK55_RS15875	0.63	-0.6
3,469,543	-		LRK55_RS15875	0.63	+1.3
3,469,543	-		LRK55_RS15875	0.63	-0.8
3,469,543	-		LRK55_RS15875	0.63	+0.5
3,469,543	-		LRK55_RS15875	0.63	-0.8
3,469,543	-		LRK55_RS15875	0.63	-0.7
3,469,543	-		LRK55_RS15875	0.63	-1.0
3,469,543	-		LRK55_RS15875	0.63	+0.0
3,469,560	+		LRK55_RS15875	0.64	+0.5
3,469,561	-		LRK55_RS15875	0.64	-0.9
3,469,665	+		LRK55_RS15875	0.71	-0.1
3,469,666	-		LRK55_RS15875	0.71	+0.1
3,469,666	-		LRK55_RS15875	0.71	+0.0
3,469,698	+		LRK55_RS15875	0.73	-0.8
3,469,698	+		LRK55_RS15875	0.73	-0.5
3,469,698	+		LRK55_RS15875	0.73	-1.5
3,469,698	+		LRK55_RS15875	0.73	-1.6
3,469,698	+		LRK55_RS15875	0.73	-0.7
3,469,698	+		LRK55_RS15875	0.73	-0.1
3,469,698	+		LRK55_RS15875	0.73	-1.7
3,469,698	+		LRK55_RS15875	0.73	-2.4
3,469,698	+		LRK55_RS15875	0.73	+0.4
3,469,698	+		LRK55_RS15875	0.73	+0.2
3,469,699	-		LRK55_RS15875	0.73	-1.5
3,469,699	-		LRK55_RS15875	0.73	-0.8
3,469,699	-		LRK55_RS15875	0.73	-2.7
3,469,699	-		LRK55_RS15875	0.73	+0.1
3,469,699	-		LRK55_RS15875	0.73	-0.7
3,469,699	-		LRK55_RS15875	0.73	-1.3
3,469,699	-		LRK55_RS15875	0.73	+0.8
3,469,911	+		LRK55_RS15875	0.88	-0.9
3,469,911	+		LRK55_RS15875	0.88	-1.9
3,469,912	-		LRK55_RS15875	0.88	-1.2
3,470,381	+		LRK55_RS15880	0.53	-1.8
3,470,381	+		LRK55_RS15880	0.53	+1.5
3,470,381	+		LRK55_RS15880	0.53	-0.2
3,470,381	+		LRK55_RS15880	0.53	-0.1
3,470,381	+		LRK55_RS15880	0.53	-0.2
3,470,382	-		LRK55_RS15880	0.53	-0.3
3,470,382	-		LRK55_RS15880	0.53	-1.4
3,470,382	-		LRK55_RS15880	0.53	-2.4
3,470,382	-		LRK55_RS15880	0.53	-0.8
3,470,382	-		LRK55_RS15880	0.53	-1.0
3,470,382	-		LRK55_RS15880	0.53	-1.0
3,470,382	-		LRK55_RS15880	0.53	+1.7
3,470,382	-		LRK55_RS15880	0.53	+1.8
3,470,426	+		LRK55_RS15880	0.61	+0.5
3,470,426	+		LRK55_RS15880	0.61	+0.4
3,470,426	+		LRK55_RS15880	0.61	-3.8
3,470,426	+		LRK55_RS15880	0.61	-0.1
3,470,426	+		LRK55_RS15880	0.61	-1.2
3,470,426	+		LRK55_RS15880	0.61	+0.1
3,470,426	+		LRK55_RS15880	0.61	-0.6
3,470,426	+		LRK55_RS15880	0.61	-2.5
3,470,427	-		LRK55_RS15880	0.62	-1.8
3,470,427	-		LRK55_RS15880	0.62	-0.2
3,470,427	-		LRK55_RS15880	0.62	+0.4
3,470,427	-		LRK55_RS15880	0.62	+0.2
3,470,427	-		LRK55_RS15880	0.62	+0.2
3,470,427	-		LRK55_RS15880	0.62	-0.5
3,470,427	-		LRK55_RS15880	0.62	+1.5
3,470,427	-		LRK55_RS15880	0.62	-2.2
3,470,554	+		LRK55_RS15880	0.86	-0.2
3,470,554	+		LRK55_RS15880	0.86	-1.8
3,470,555	-		LRK55_RS15880	0.86	+0.4
3,470,555	-		LRK55_RS15880	0.86	-1.1
3,470,555	-		LRK55_RS15880	0.86	+0.6
3,470,555	-		LRK55_RS15880	0.86	+0.1
3,470,555	-		LRK55_RS15880	0.86	-0.0
3,470,555	-		LRK55_RS15880	0.86	+0.2
3,470,555	-		LRK55_RS15880	0.86	+1.3
3,470,641	+				-0.5
3,470,641	+				-1.6
3,470,641	+				+0.5
3,470,642	-				+0.2
3,470,642	-				+1.0
3,470,642	-				+0.9
3,470,642	-				-0.1
3,470,665	-				-1.7
3,470,938	+		LRK55_RS15885	0.29	-2.0
3,470,938	+		LRK55_RS15885	0.29	+0.6
3,470,938	+		LRK55_RS15885	0.29	-1.5
3,470,938	+		LRK55_RS15885	0.29	-0.1
3,470,938	+		LRK55_RS15885	0.29	-0.0
3,470,939	-		LRK55_RS15885	0.29	-0.1
3,470,939	-		LRK55_RS15885	0.29	+3.5