Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09735

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
2,128,704	+				+0.5
2,128,704	+				+1.7
2,128,704	+				+0.6
2,128,705	-				+0.9
2,128,705	-				-0.5
2,128,705	-				-0.7
2,128,707	+				+0.4
2,128,707	+				-0.3
2,128,708	-				-0.1
2,128,722	+		LRK55_RS09730	0.11	-0.3
2,128,722	+		LRK55_RS09730	0.11	+0.7
2,128,722	+		LRK55_RS09730	0.11	+0.3
2,128,722	+		LRK55_RS09730	0.11	+0.5
2,128,722	+		LRK55_RS09730	0.11	-0.1
2,128,722	+		LRK55_RS09730	0.11	+0.5
2,128,723	-		LRK55_RS09730	0.11	-1.6
2,128,723	-		LRK55_RS09730	0.11	-0.5
2,128,797	+		LRK55_RS09730	0.20	+0.1
2,128,797	+		LRK55_RS09730	0.20	+0.5
2,128,797	+		LRK55_RS09730	0.20	-0.4
2,128,797	+		LRK55_RS09730	0.20	+2.0
2,128,797	+		LRK55_RS09730	0.20	+0.5
2,128,797	+		LRK55_RS09730	0.20	+1.2
2,128,797	+		LRK55_RS09730	0.20	-0.1
2,128,797	+		LRK55_RS09730	0.20	-1.2
2,128,798	-		LRK55_RS09730	0.20	+0.7
2,128,798	-		LRK55_RS09730	0.20	+0.9
2,128,798	-		LRK55_RS09730	0.20	+2.1
2,128,798	-		LRK55_RS09730	0.20	+0.5
2,128,798	-		LRK55_RS09730	0.20	+0.4
2,128,798	-		LRK55_RS09730	0.20	+0.1
2,128,798	-		LRK55_RS09730	0.20	+0.4
2,128,798	-		LRK55_RS09730	0.20	-0.4
2,128,798	-		LRK55_RS09730	0.20	-0.3
2,128,821	+		LRK55_RS09730	0.23	+0.1
2,128,821	+		LRK55_RS09730	0.23	+1.6
2,128,822	-		LRK55_RS09730	0.23	-3.9
2,128,822	-		LRK55_RS09730	0.23	+1.1
2,129,034	+		LRK55_RS09730	0.49	-0.3
2,129,035	-		LRK55_RS09730	0.50	-0.6
2,129,035	-		LRK55_RS09730	0.50	-0.3
2,129,035	-		LRK55_RS09730	0.50	-0.2
2,129,035	-		LRK55_RS09730	0.50	+1.0
2,129,094	+		LRK55_RS09730	0.57	+0.3
2,129,094	+		LRK55_RS09730	0.57	-0.0
2,129,094	+		LRK55_RS09730	0.57	+1.0
2,129,094	+		LRK55_RS09730	0.57	+0.9
2,129,094	+		LRK55_RS09730	0.57	-0.2
2,129,094	+		LRK55_RS09730	0.57	+0.5
2,129,094	+		LRK55_RS09730	0.57	-0.0
2,129,094	+		LRK55_RS09730	0.57	+1.0
2,129,094	+		LRK55_RS09730	0.57	+3.1
2,129,095	-		LRK55_RS09730	0.57	-1.9
2,129,095	-		LRK55_RS09730	0.57	-0.1
2,129,095	-		LRK55_RS09730	0.57	-1.1
2,129,095	-		LRK55_RS09730	0.57	+0.2
2,129,095	-		LRK55_RS09730	0.57	+0.4
2,129,095	-		LRK55_RS09730	0.57	+0.3
2,129,095	-		LRK55_RS09730	0.57	+0.3
2,129,095	-		LRK55_RS09730	0.57	+0.8
2,129,115	+		LRK55_RS09730	0.59	-0.7
2,129,115	+		LRK55_RS09730	0.59	-1.4
2,129,116	-		LRK55_RS09730	0.59	+0.1
2,129,190	+		LRK55_RS09730	0.69	-1.5
2,129,190	+		LRK55_RS09730	0.69	+0.5
2,129,190	+		LRK55_RS09730	0.69	+0.7
2,129,191	-		LRK55_RS09730	0.69	+0.7
2,129,191	-		LRK55_RS09730	0.69	+0.4
2,129,191	-		LRK55_RS09730	0.69	+0.6
2,129,458	-				-0.4
2,129,552	+				-0.9
2,129,552	+				+0.2
2,129,552	+				-1.2
2,129,552	+				-0.0
2,129,552	+				-0.3
2,129,552	+				+0.6
2,129,552	+				+1.2
2,129,552	+				+0.5
2,129,552	+				-1.0
2,129,552	+				+1.5
2,129,553	-				+1.5
2,129,553	-				-0.0
2,129,553	-				-0.1
2,129,553	-				+1.2
2,129,553	-				+0.3
2,129,553	-				+1.8
2,129,553	-				+0.1
2,129,553	-				+1.1
2,129,553	-				+0.2
2,129,609	+				+1.1
2,129,609	+				-0.5
2,129,633	+				+0.5
2,129,633	+				+0.7
2,129,634	-				-1.1
2,129,634	-				-0.1
2,129,634	-				+0.3
2,129,634	-				+0.4
2,129,634	-				+0.4
2,129,767	+		LRK55_RS09735	0.15	+0.6
2,129,767	+		LRK55_RS09735	0.15	+0.0
2,129,768	-		LRK55_RS09735	0.16	+0.5
2,129,768	-		LRK55_RS09735	0.16	-0.0
2,129,806	+		LRK55_RS09735	0.20	+3.3
2,129,806	+		LRK55_RS09735	0.20	+0.1
2,129,806	+		LRK55_RS09735	0.20	+1.5
2,129,806	+		LRK55_RS09735	0.20	+0.2
2,129,806	+		LRK55_RS09735	0.20	+0.7
2,129,806	+		LRK55_RS09735	0.20	+0.5
2,129,807	-		LRK55_RS09735	0.20	+0.4
2,129,807	-		LRK55_RS09735	0.20	-0.7
2,129,807	-		LRK55_RS09735	0.20	-1.7
2,129,807	-		LRK55_RS09735	0.20	-0.9
2,129,860	+		LRK55_RS09735	0.25	+0.1
2,129,860	+		LRK55_RS09735	0.25	-1.6
2,129,860	+		LRK55_RS09735	0.25	+0.7
2,129,861	-		LRK55_RS09735	0.25	+0.3
2,129,861	-		LRK55_RS09735	0.25	+0.5
2,129,974	+		LRK55_RS09735	0.37	+1.3
2,129,975	-		LRK55_RS09735	0.37	+0.8
2,129,975	-		LRK55_RS09735	0.37	+0.9
2,129,975	-		LRK55_RS09735	0.37	-0.4
2,129,975	-		LRK55_RS09735	0.37	-0.7
2,130,050	-		LRK55_RS09735	0.45	-0.6
2,130,050	-		LRK55_RS09735	0.45	+0.7
2,130,091	+		LRK55_RS09735	0.50	-0.4
2,130,091	+		LRK55_RS09735	0.50	-0.5
2,130,092	-		LRK55_RS09735	0.50	+2.2
2,130,095	-		LRK55_RS09735	0.50	+0.6
2,130,095	-		LRK55_RS09735	0.50	-0.4
2,130,142	+		LRK55_RS09735	0.55	-0.4
2,130,142	+		LRK55_RS09735	0.55	+1.1
2,130,142	+		LRK55_RS09735	0.55	+0.5
2,130,142	+		LRK55_RS09735	0.55	+0.3
2,130,143	-		LRK55_RS09735	0.55	+0.6
2,130,143	-		LRK55_RS09735	0.55	-0.6
2,130,226	+		LRK55_RS09735	0.64	-0.8
2,130,226	+		LRK55_RS09735	0.64	+0.3
2,130,227	-		LRK55_RS09735	0.64	-0.1
2,130,227	-		LRK55_RS09735	0.64	+1.2
2,130,259	+		LRK55_RS09735	0.67	-0.5
2,130,259	+		LRK55_RS09735	0.67	-0.2
2,130,259	+		LRK55_RS09735	0.67	-1.0
2,130,260	-		LRK55_RS09735	0.67	+0.4
2,130,260	-		LRK55_RS09735	0.67	-0.0
2,130,260	-		LRK55_RS09735	0.67	-0.5
2,130,412	+		LRK55_RS09735	0.83	+1.4
2,130,532	+				-0.3
2,130,597	+				-0.0
2,130,597	+				+2.0
2,130,597	+				+0.4
2,130,597	+				+0.3
2,130,597	+				+0.3
2,130,597	+				+0.2
2,130,597	+				-1.7
2,130,598	-				+0.5
2,130,598	-				-0.8
2,130,598	-				-0.3
2,130,598	-				+0.5
2,130,598	-				+0.8
2,130,598	-				-0.8
2,130,598	-				+1.0
2,130,598	-				+1.0
2,130,598	-				-0.4
2,130,598	-				-2.2
2,130,598	-				-0.1
2,130,598	-				+0.9
2,130,603	+				-0.8
2,130,604	-				+0.9
2,130,708	+		LRK55_RS09740	0.15	+1.1
2,130,708	+		LRK55_RS09740	0.15	+2.2
2,130,709	-		LRK55_RS09740	0.15	-0.3
2,130,723	+		LRK55_RS09740	0.17	+0.2
2,130,858	+		LRK55_RS09740	0.31	-1.8
2,130,859	-		LRK55_RS09740	0.31	+0.1
2,130,859	-		LRK55_RS09740	0.31	+0.4
2,130,859	-		LRK55_RS09740	0.31	+0.4
2,130,882	+		LRK55_RS09740	0.34	-0.3
2,130,883	-		LRK55_RS09740	0.34	+1.5
2,130,883	-		LRK55_RS09740	0.34	-1.5
2,130,883	-		LRK55_RS09740	0.34	-0.4
2,130,883	-		LRK55_RS09740	0.34	-0.3
2,131,002	+		LRK55_RS09740	0.47	+1.3
2,131,002	+		LRK55_RS09740	0.47	+0.2
2,131,002	+		LRK55_RS09740	0.47	+0.1
2,131,002	+		LRK55_RS09740	0.47	-0.8
2,131,002	+		LRK55_RS09740	0.47	+1.0
2,131,002	+		LRK55_RS09740	0.47	-0.8
2,131,002	+		LRK55_RS09740	0.47	-1.5
2,131,003	-		LRK55_RS09740	0.47	-0.0
2,131,003	-		LRK55_RS09740	0.47	+0.8
2,131,003	-		LRK55_RS09740	0.47	-0.0
2,131,003	-		LRK55_RS09740	0.47	-2.4
2,131,003	-		LRK55_RS09740	0.47	-0.1
2,131,003	-		LRK55_RS09740	0.47	+0.0
2,131,003	-		LRK55_RS09740	0.47	+0.2
2,131,003	-		LRK55_RS09740	0.47	+1.1
2,131,003	-		LRK55_RS09740	0.47	-1.3
2,131,003	-		LRK55_RS09740	0.47	+0.1
2,131,003	-		LRK55_RS09740	0.47	-2.0
2,131,020	+		LRK55_RS09740	0.49	+0.3
2,131,021	-		LRK55_RS09740	0.49	+0.2
2,131,164	+		LRK55_RS09740	0.64	+1.5
2,131,164	+		LRK55_RS09740	0.64	-0.7
2,131,164	+		LRK55_RS09740	0.64	+0.5
2,131,164	+		LRK55_RS09740	0.64	-1.4
2,131,164	+		LRK55_RS09740	0.64	+0.4
2,131,165	-		LRK55_RS09740	0.65	-0.6
2,131,165	-		LRK55_RS09740	0.65	+0.3
2,131,165	-		LRK55_RS09740	0.65	+1.1
2,131,165	-		LRK55_RS09740	0.65	+0.4
2,131,165	-		LRK55_RS09740	0.65	+0.3
2,131,165	-		LRK55_RS09740	0.65	+0.4
2,131,165	-		LRK55_RS09740	0.65	-0.0
2,131,165	-		LRK55_RS09740	0.65	-1.5
2,131,167	+		LRK55_RS09740	0.65	-0.4
2,131,167	+		LRK55_RS09740	0.65	-0.1
2,131,167	+		LRK55_RS09740	0.65	-0.5
2,131,167	+		LRK55_RS09740	0.65	-0.4
2,131,167	+		LRK55_RS09740	0.65	+0.9
2,131,168	-		LRK55_RS09740	0.65	+0.0
2,131,168	-		LRK55_RS09740	0.65	-0.1
2,131,168	-		LRK55_RS09740	0.65	-1.6
2,131,168	-		LRK55_RS09740	0.65	+0.2
2,131,168	-		LRK55_RS09740	0.65	+0.2
2,131,245	+		LRK55_RS09740	0.73	-0.3
2,131,245	+		LRK55_RS09740	0.73	-0.4
2,131,245	+		LRK55_RS09740	0.73	+0.9
2,131,245	+		LRK55_RS09740	0.73	+0.3
2,131,284	+		LRK55_RS09740	0.77	+0.9
2,131,284	+		LRK55_RS09740	0.77	-1.1
2,131,285	-		LRK55_RS09740	0.77	-0.3
2,131,285	-		LRK55_RS09740	0.77	+0.5
2,131,285	-		LRK55_RS09740	0.77	+0.3
2,131,285	-		LRK55_RS09740	0.77	-0.0
2,131,285	-		LRK55_RS09740	0.77	+2.1
2,131,380	+		LRK55_RS09740	0.88	+1.3
2,131,380	+		LRK55_RS09740	0.88	-1.7
2,131,381	-		LRK55_RS09740	0.88	-1.5
2,131,531	+				+0.2
2,131,531	+				+0.1
2,131,531	+				+0.9
2,131,531	+				+1.2
2,131,531	+				+0.0
2,131,532	-				-0.8
2,131,532	-				+0.1