Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS06530 and LRK55_RS06535 overlap by 1 nucleotides LRK55_RS06535 and LRK55_RS06540 are separated by 132 nucleotides LRK55_RS06540 and LRK55_RS06545 are separated by 77 nucleotides
LRK55_RS06530: LRK55_RS06530 - protein-disulfide reductase DsbD, at 1,412,063 to 1,414,252
_RS06530
LRK55_RS06535: LRK55_RS06535 - TlpA disulfide reductase family protein, at 1,414,252 to 1,414,788
_RS06535
LRK55_RS06540: LRK55_RS06540 - type II 3-dehydroquinate dehydratase, at 1,414,921 to 1,415,373
_RS06540
LRK55_RS06545: LRK55_RS06545 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 1,415,451 to 1,415,909
_RS06545
Position (kb) 1414
1415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1413.558 kb on + strand, within LRK55_RS06530 at 1413.671 kb on + strand, within LRK55_RS06530 at 1413.671 kb on + strand, within LRK55_RS06530 at 1413.672 kb on - strand, within LRK55_RS06530 at 1413.857 kb on + strand, within LRK55_RS06530 at 1413.858 kb on - strand, within LRK55_RS06530 at 1413.858 kb on - strand, within LRK55_RS06530 at 1413.966 kb on + strand, within LRK55_RS06530 at 1414.130 kb on + strand at 1414.131 kb on - strand at 1414.154 kb on + strand at 1414.154 kb on + strand at 1414.154 kb on + strand at 1414.426 kb on + strand, within LRK55_RS06535 at 1414.427 kb on - strand, within LRK55_RS06535 at 1414.606 kb on + strand, within LRK55_RS06535 at 1414.662 kb on + strand, within LRK55_RS06535 at 1414.663 kb on - strand, within LRK55_RS06535 at 1414.663 kb on - strand, within LRK55_RS06535 at 1414.681 kb on + strand, within LRK55_RS06535 at 1414.681 kb on + strand, within LRK55_RS06535 at 1414.681 kb on + strand, within LRK55_RS06535 at 1414.681 kb on + strand, within LRK55_RS06535 at 1414.682 kb on - strand, within LRK55_RS06535 at 1414.682 kb on - strand, within LRK55_RS06535 at 1414.682 kb on - strand, within LRK55_RS06535 at 1414.682 kb on - strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.683 kb on + strand, within LRK55_RS06535 at 1414.684 kb on - strand, within LRK55_RS06535 at 1414.684 kb on - strand, within LRK55_RS06535 at 1414.684 kb on - strand, within LRK55_RS06535 at 1414.684 kb on - strand, within LRK55_RS06535 at 1414.684 kb on - strand, within LRK55_RS06535 at 1414.684 kb on - strand, within LRK55_RS06535 at 1414.684 kb on - strand, within LRK55_RS06535 at 1414.689 kb on - strand, within LRK55_RS06535 at 1414.689 kb on - strand, within LRK55_RS06535 at 1414.791 kb on + strand at 1414.791 kb on + strand at 1414.792 kb on - strand at 1414.792 kb on - strand at 1414.792 kb on - strand at 1414.792 kb on - strand at 1414.987 kb on + strand, within LRK55_RS06540 at 1414.987 kb on + strand, within LRK55_RS06540 at 1414.987 kb on + strand, within LRK55_RS06540 at 1414.987 kb on + strand, within LRK55_RS06540 at 1414.987 kb on + strand, within LRK55_RS06540 at 1414.987 kb on + strand, within LRK55_RS06540 at 1414.987 kb on + strand, within LRK55_RS06540 at 1414.987 kb on + strand, within LRK55_RS06540 at 1415.266 kb on + strand, within LRK55_RS06540 at 1415.266 kb on + strand, within LRK55_RS06540 at 1415.266 kb on + strand, within LRK55_RS06540 at 1415.266 kb on + strand, within LRK55_RS06540 at 1415.266 kb on + strand, within LRK55_RS06540 at 1415.266 kb on + strand, within LRK55_RS06540
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM remove 1,413,558 + LRK55_RS06530 0.68 -0.6 1,413,671 + LRK55_RS06530 0.73 -0.1 1,413,671 + LRK55_RS06530 0.73 +0.4 1,413,672 - LRK55_RS06530 0.73 +1.4 1,413,857 + LRK55_RS06530 0.82 +0.4 1,413,858 - LRK55_RS06530 0.82 -0.9 1,413,858 - LRK55_RS06530 0.82 -1.1 1,413,966 + LRK55_RS06530 0.87 -1.1 1,414,130 + -0.6 1,414,131 - -1.4 1,414,154 + +1.4 1,414,154 + +1.4 1,414,154 + -0.9 1,414,426 + LRK55_RS06535 0.32 +1.0 1,414,427 - LRK55_RS06535 0.33 -2.1 1,414,606 + LRK55_RS06535 0.66 -0.6 1,414,662 + LRK55_RS06535 0.76 -0.5 1,414,663 - LRK55_RS06535 0.77 +0.1 1,414,663 - LRK55_RS06535 0.77 -1.5 1,414,681 + LRK55_RS06535 0.80 +0.4 1,414,681 + LRK55_RS06535 0.80 -0.9 1,414,681 + LRK55_RS06535 0.80 +0.3 1,414,681 + LRK55_RS06535 0.80 -1.4 1,414,682 - LRK55_RS06535 0.80 -0.3 1,414,682 - LRK55_RS06535 0.80 +2.0 1,414,682 - LRK55_RS06535 0.80 -1.7 1,414,682 - LRK55_RS06535 0.80 -0.6 1,414,683 + LRK55_RS06535 0.80 +1.1 1,414,683 + LRK55_RS06535 0.80 -0.3 1,414,683 + LRK55_RS06535 0.80 -0.2 1,414,683 + LRK55_RS06535 0.80 -0.1 1,414,683 + LRK55_RS06535 0.80 -1.9 1,414,683 + LRK55_RS06535 0.80 -1.6 1,414,683 + LRK55_RS06535 0.80 -2.0 1,414,683 + LRK55_RS06535 0.80 -1.3 1,414,684 - LRK55_RS06535 0.80 -1.6 1,414,684 - LRK55_RS06535 0.80 -0.7 1,414,684 - LRK55_RS06535 0.80 +0.6 1,414,684 - LRK55_RS06535 0.80 -0.5 1,414,684 - LRK55_RS06535 0.80 -0.5 1,414,684 - LRK55_RS06535 0.80 -1.1 1,414,684 - LRK55_RS06535 0.80 -0.7 1,414,689 - LRK55_RS06535 0.81 +0.1 1,414,689 - LRK55_RS06535 0.81 -2.3 1,414,791 + +1.4 1,414,791 + +0.1 1,414,792 - -0.4 1,414,792 - +0.3 1,414,792 - -0.6 1,414,792 - -0.1 1,414,987 + LRK55_RS06540 0.15 -1.3 1,414,987 + LRK55_RS06540 0.15 -1.6 1,414,987 + LRK55_RS06540 0.15 -1.3 1,414,987 + LRK55_RS06540 0.15 -0.6 1,414,987 + LRK55_RS06540 0.15 -0.8 1,414,987 + LRK55_RS06540 0.15 -0.9 1,414,987 + LRK55_RS06540 0.15 -0.9 1,414,987 + LRK55_RS06540 0.15 -2.1 1,415,266 + LRK55_RS06540 0.76 -2.8 1,415,266 + LRK55_RS06540 0.76 -1.7 1,415,266 + LRK55_RS06540 0.76 -3.4 1,415,266 + LRK55_RS06540 0.76 -2.7 1,415,266 + LRK55_RS06540 0.76 -1.7 1,415,266 + LRK55_RS06540 0.76 -1.6
Or see this region's nucleotide sequence