Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS09275

Experiment: Anaerobic no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS09265 and ABCV34_RS09270 are separated by 0 nucleotidesABCV34_RS09270 and ABCV34_RS09275 are separated by 113 nucleotidesABCV34_RS09275 and ABCV34_RS09280 are separated by 134 nucleotides ABCV34_RS09265: ABCV34_RS09265 - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 1,983,822 to 1,984,649 _RS09265 ABCV34_RS09270: ABCV34_RS09270 - RidA family protein, at 1,984,650 to 1,984,994 _RS09270 ABCV34_RS09275: ABCV34_RS09275 - FAD-binding oxidoreductase, at 1,985,108 to 1,986,520 _RS09275 ABCV34_RS09280: ABCV34_RS09280 - phosphomannomutase/phosphoglucomutase, at 1,986,655 to 1,988,034 _RS09280 Position (kb) 1985 1986 1987Strain fitness (log2 ratio) -3 -2 -1 0 1at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.344 kb on + strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.345 kb on - strand, within ABCV34_RS09265at 1984.362 kb on + strand, within ABCV34_RS09265at 1984.362 kb on + strand, within ABCV34_RS09265at 1984.362 kb on + strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.363 kb on - strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.491 kb on + strand, within ABCV34_RS09265at 1984.492 kb on - strand, within ABCV34_RS09265at 1984.492 kb on - strand, within ABCV34_RS09265at 1984.492 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.522 kb on - strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.545 kb on + strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.546 kb on - strand, within ABCV34_RS09265at 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.620 kb on + strandat 1984.621 kb on - strandat 1984.621 kb on - strandat 1984.621 kb on - strandat 1984.927 kb on + strand, within ABCV34_RS09270at 1984.928 kb on - strand, within ABCV34_RS09270at 1984.979 kb on + strandat 1984.980 kb on - strandat 1985.033 kb on + strandat 1985.034 kb on - strandat 1986.562 kb on + strandat 1986.562 kb on + strandat 1986.562 kb on + strandat 1986.563 kb on - strandat 1986.563 kb on - strandat 1986.563 kb on - strandat 1986.563 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic no stress control
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1,984,344 + ABCV34_RS09265 0.63 -0.4
1,984,344 + ABCV34_RS09265 0.63 -2.2
1,984,344 + ABCV34_RS09265 0.63 -1.2
1,984,344 + ABCV34_RS09265 0.63 -2.4
1,984,344 + ABCV34_RS09265 0.63 -0.8
1,984,344 + ABCV34_RS09265 0.63 -2.1
1,984,344 + ABCV34_RS09265 0.63 -1.7
1,984,344 + ABCV34_RS09265 0.63 -3.1
1,984,344 + ABCV34_RS09265 0.63 -1.4
1,984,345 - ABCV34_RS09265 0.63 -2.3
1,984,345 - ABCV34_RS09265 0.63 -2.0
1,984,345 - ABCV34_RS09265 0.63 -1.8
1,984,345 - ABCV34_RS09265 0.63 -1.9
1,984,345 - ABCV34_RS09265 0.63 -1.6
1,984,345 - ABCV34_RS09265 0.63 -1.8
1,984,345 - ABCV34_RS09265 0.63 -2.3
1,984,345 - ABCV34_RS09265 0.63 -1.1
1,984,362 + ABCV34_RS09265 0.65 -2.7
1,984,362 + ABCV34_RS09265 0.65 -0.4
1,984,362 + ABCV34_RS09265 0.65 -0.7
1,984,363 - ABCV34_RS09265 0.65 -1.4
1,984,363 - ABCV34_RS09265 0.65 -0.5
1,984,363 - ABCV34_RS09265 0.65 -0.8
1,984,363 - ABCV34_RS09265 0.65 -1.9
1,984,491 + ABCV34_RS09265 0.81 -3.1
1,984,491 + ABCV34_RS09265 0.81 -2.1
1,984,491 + ABCV34_RS09265 0.81 -1.6
1,984,491 + ABCV34_RS09265 0.81 -1.8
1,984,492 - ABCV34_RS09265 0.81 -1.6
1,984,492 - ABCV34_RS09265 0.81 -2.5
1,984,492 - ABCV34_RS09265 0.81 -1.7
1,984,522 - ABCV34_RS09265 0.85 -1.9
1,984,522 - ABCV34_RS09265 0.85 -1.3
1,984,522 - ABCV34_RS09265 0.85 -1.5
1,984,522 - ABCV34_RS09265 0.85 -3.0
1,984,522 - ABCV34_RS09265 0.85 -0.9
1,984,522 - ABCV34_RS09265 0.85 -0.1
1,984,522 - ABCV34_RS09265 0.85 -1.6
1,984,545 + ABCV34_RS09265 0.87 -2.1
1,984,545 + ABCV34_RS09265 0.87 -1.7
1,984,545 + ABCV34_RS09265 0.87 -2.9
1,984,545 + ABCV34_RS09265 0.87 -1.5
1,984,545 + ABCV34_RS09265 0.87 -2.7
1,984,545 + ABCV34_RS09265 0.87 -2.1
1,984,546 - ABCV34_RS09265 0.87 -1.6
1,984,546 - ABCV34_RS09265 0.87 -1.9
1,984,546 - ABCV34_RS09265 0.87 -1.5
1,984,546 - ABCV34_RS09265 0.87 -1.6
1,984,546 - ABCV34_RS09265 0.87 -2.6
1,984,546 - ABCV34_RS09265 0.87 -2.1
1,984,546 - ABCV34_RS09265 0.87 -2.6
1,984,620 + -1.7
1,984,620 + -2.6
1,984,620 + -2.1
1,984,620 + -1.8
1,984,620 + -1.4
1,984,620 + -3.1
1,984,620 + -1.6
1,984,621 - -2.3
1,984,621 - -2.5
1,984,621 - -0.7
1,984,927 + ABCV34_RS09270 0.80 -3.4
1,984,928 - ABCV34_RS09270 0.81 -2.6
1,984,979 + -1.8
1,984,980 - -2.0
1,985,033 + -1.5
1,985,034 - -1.7
1,986,562 + -2.5
1,986,562 + -0.7
1,986,562 + -1.8
1,986,563 - -1.8
1,986,563 - -3.0
1,986,563 - -1.4
1,986,563 - -1.7

Or see this region's nucleotide sequence