Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS19645

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS19635 and LRK55_RS19640 are separated by 61 nucleotidesLRK55_RS19640 and LRK55_RS19645 are separated by 48 nucleotidesLRK55_RS19645 and LRK55_RS19650 are separated by 74 nucleotidesLRK55_RS19650 and LRK55_RS19655 are separated by 102 nucleotides LRK55_RS19635: LRK55_RS19635 - hypothetical protein, at 256,759 to 256,953 _RS19635 LRK55_RS19640: LRK55_RS19640 - DsbC family protein, at 257,015 to 257,896 _RS19640 LRK55_RS19645: LRK55_RS19645 - energy transducer TonB, at 257,945 to 258,583 _RS19645 LRK55_RS19650: LRK55_RS19650 - hypothetical protein, at 258,658 to 259,008 _RS19650 LRK55_RS19655: LRK55_RS19655 - lytic transglycosylase domain-containing protein, at 259,111 to 259,731 _RS19655 Position (kb) 257 258 259Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.953 kb on + strandat 256.954 kb on - strandat 256.954 kb on - strandat 256.954 kb on - strandat 256.954 kb on - strandat 256.954 kb on - strandat 256.954 kb on - strandat 256.954 kb on - strandat 256.954 kb on - strandat 257.121 kb on + strand, within LRK55_RS19640at 257.121 kb on + strand, within LRK55_RS19640at 257.166 kb on + strand, within LRK55_RS19640at 257.166 kb on + strand, within LRK55_RS19640at 257.166 kb on + strand, within LRK55_RS19640at 257.166 kb on + strand, within LRK55_RS19640at 257.166 kb on + strand, within LRK55_RS19640at 257.166 kb on + strand, within LRK55_RS19640at 257.166 kb on + strand, within LRK55_RS19640at 257.167 kb on - strand, within LRK55_RS19640at 257.167 kb on - strand, within LRK55_RS19640at 257.167 kb on - strand, within LRK55_RS19640at 257.167 kb on - strand, within LRK55_RS19640at 257.238 kb on + strand, within LRK55_RS19640at 257.238 kb on + strand, within LRK55_RS19640at 257.238 kb on + strand, within LRK55_RS19640at 257.239 kb on - strand, within LRK55_RS19640at 257.325 kb on + strand, within LRK55_RS19640at 257.325 kb on + strand, within LRK55_RS19640at 257.325 kb on + strand, within LRK55_RS19640at 257.326 kb on - strand, within LRK55_RS19640at 257.326 kb on - strand, within LRK55_RS19640at 257.326 kb on - strand, within LRK55_RS19640at 257.352 kb on + strand, within LRK55_RS19640at 257.352 kb on + strand, within LRK55_RS19640at 257.352 kb on + strand, within LRK55_RS19640at 257.352 kb on + strand, within LRK55_RS19640at 257.353 kb on - strand, within LRK55_RS19640at 257.353 kb on - strand, within LRK55_RS19640at 257.353 kb on - strand, within LRK55_RS19640at 257.353 kb on - strand, within LRK55_RS19640at 257.353 kb on - strand, within LRK55_RS19640at 257.421 kb on + strand, within LRK55_RS19640at 257.422 kb on - strand, within LRK55_RS19640at 257.422 kb on - strand, within LRK55_RS19640at 257.550 kb on + strand, within LRK55_RS19640at 257.551 kb on - strand, within LRK55_RS19640at 257.560 kb on - strand, within LRK55_RS19640at 257.560 kb on - strand, within LRK55_RS19640at 257.560 kb on - strand, within LRK55_RS19640at 257.580 kb on + strand, within LRK55_RS19640at 257.580 kb on + strand, within LRK55_RS19640at 257.580 kb on + strand, within LRK55_RS19640at 257.581 kb on - strand, within LRK55_RS19640at 257.581 kb on - strand, within LRK55_RS19640at 257.850 kb on + strandat 258.008 kb on + strandat 258.008 kb on + strandat 258.008 kb on + strandat 258.008 kb on + strandat 258.009 kb on - strand, within LRK55_RS19645at 258.009 kb on - strand, within LRK55_RS19645at 258.296 kb on + strand, within LRK55_RS19645at 258.296 kb on + strand, within LRK55_RS19645at 258.335 kb on + strand, within LRK55_RS19645at 258.363 kb on + strand, within LRK55_RS19645at 258.363 kb on + strand, within LRK55_RS19645at 258.363 kb on + strand, within LRK55_RS19645at 258.364 kb on - strand, within LRK55_RS19645at 258.364 kb on - strand, within LRK55_RS19645at 258.364 kb on - strand, within LRK55_RS19645at 258.364 kb on - strand, within LRK55_RS19645at 258.364 kb on - strand, within LRK55_RS19645at 258.682 kb on + strandat 258.683 kb on - strandat 258.683 kb on - strandat 258.683 kb on - strandat 258.683 kb on - strandat 258.703 kb on + strand, within LRK55_RS19650at 258.703 kb on + strand, within LRK55_RS19650at 258.704 kb on - strand, within LRK55_RS19650at 258.772 kb on - strand, within LRK55_RS19650at 258.772 kb on - strand, within LRK55_RS19650at 258.832 kb on + strand, within LRK55_RS19650at 258.833 kb on - strand, within LRK55_RS19650at 258.833 kb on - strand, within LRK55_RS19650at 258.833 kb on - strand, within LRK55_RS19650at 258.833 kb on - strand, within LRK55_RS19650at 258.836 kb on - strand, within LRK55_RS19650at 258.836 kb on - strand, within LRK55_RS19650at 259.006 kb on + strandat 259.006 kb on + strandat 259.007 kb on - strandat 259.007 kb on - strandat 259.007 kb on - strandat 259.068 kb on + strandat 259.068 kb on + strandat 259.068 kb on + strandat 259.069 kb on - strandat 259.069 kb on - strandat 259.069 kb on - strandat 259.082 kb on - strandat 259.082 kb on - strandat 259.137 kb on - strandat 259.399 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.465 kb on + strand, within LRK55_RS19655at 259.466 kb on - strand, within LRK55_RS19655at 259.466 kb on - strand, within LRK55_RS19655at 259.466 kb on - strand, within LRK55_RS19655at 259.466 kb on - strand, within LRK55_RS19655at 259.466 kb on - strand, within LRK55_RS19655

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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256,953 + +0.9
256,953 + -0.4
256,953 + -0.2
256,953 + +1.1
256,953 + +0.1
256,953 + +0.4
256,953 + -1.2
256,953 + -1.7
256,953 + -0.3
256,953 + -0.8
256,953 + +0.6
256,954 - +0.2
256,954 - +0.9
256,954 - -0.6
256,954 - -0.4
256,954 - +0.2
256,954 - +0.5
256,954 - -0.5
256,954 - -1.2
257,121 + LRK55_RS19640 0.12 +0.3
257,121 + LRK55_RS19640 0.12 -2.0
257,166 + LRK55_RS19640 0.17 -1.0
257,166 + LRK55_RS19640 0.17 -0.8
257,166 + LRK55_RS19640 0.17 -0.9
257,166 + LRK55_RS19640 0.17 -2.2
257,166 + LRK55_RS19640 0.17 +0.9
257,166 + LRK55_RS19640 0.17 +0.8
257,166 + LRK55_RS19640 0.17 -0.9
257,167 - LRK55_RS19640 0.17 -1.6
257,167 - LRK55_RS19640 0.17 -1.7
257,167 - LRK55_RS19640 0.17 -1.0
257,167 - LRK55_RS19640 0.17 +1.0
257,238 + LRK55_RS19640 0.25 +0.4
257,238 + LRK55_RS19640 0.25 +0.4
257,238 + LRK55_RS19640 0.25 +1.7
257,239 - LRK55_RS19640 0.25 -1.4
257,325 + LRK55_RS19640 0.35 -0.1
257,325 + LRK55_RS19640 0.35 +0.3
257,325 + LRK55_RS19640 0.35 -0.7
257,326 - LRK55_RS19640 0.35 +0.8
257,326 - LRK55_RS19640 0.35 -0.0
257,326 - LRK55_RS19640 0.35 +0.2
257,352 + LRK55_RS19640 0.38 +0.2
257,352 + LRK55_RS19640 0.38 +0.7
257,352 + LRK55_RS19640 0.38 +0.5
257,352 + LRK55_RS19640 0.38 -0.4
257,353 - LRK55_RS19640 0.38 -0.4
257,353 - LRK55_RS19640 0.38 +0.5
257,353 - LRK55_RS19640 0.38 +0.4
257,353 - LRK55_RS19640 0.38 +2.2
257,353 - LRK55_RS19640 0.38 -0.4
257,421 + LRK55_RS19640 0.46 +0.2
257,422 - LRK55_RS19640 0.46 +1.1
257,422 - LRK55_RS19640 0.46 +0.1
257,550 + LRK55_RS19640 0.61 -0.0
257,551 - LRK55_RS19640 0.61 -1.0
257,560 - LRK55_RS19640 0.62 -0.1
257,560 - LRK55_RS19640 0.62 -0.1
257,560 - LRK55_RS19640 0.62 +0.7
257,580 + LRK55_RS19640 0.64 -1.5
257,580 + LRK55_RS19640 0.64 -0.1
257,580 + LRK55_RS19640 0.64 -0.2
257,581 - LRK55_RS19640 0.64 -1.4
257,581 - LRK55_RS19640 0.64 -0.0
257,850 + -0.0
258,008 + +0.1
258,008 + +0.7
258,008 + -0.5
258,008 + -0.1
258,009 - LRK55_RS19645 0.10 -0.1
258,009 - LRK55_RS19645 0.10 -0.2
258,296 + LRK55_RS19645 0.55 +0.3
258,296 + LRK55_RS19645 0.55 +1.1
258,335 + LRK55_RS19645 0.61 -0.6
258,363 + LRK55_RS19645 0.65 +0.1
258,363 + LRK55_RS19645 0.65 -0.0
258,363 + LRK55_RS19645 0.65 +1.7
258,364 - LRK55_RS19645 0.66 +0.4
258,364 - LRK55_RS19645 0.66 -2.9
258,364 - LRK55_RS19645 0.66 -1.1
258,364 - LRK55_RS19645 0.66 +0.4
258,364 - LRK55_RS19645 0.66 -0.5
258,682 + +0.1
258,683 - +2.1
258,683 - -1.0
258,683 - +0.2
258,683 - -0.1
258,703 + LRK55_RS19650 0.13 -0.2
258,703 + LRK55_RS19650 0.13 +0.6
258,704 - LRK55_RS19650 0.13 -1.0
258,772 - LRK55_RS19650 0.32 +1.2
258,772 - LRK55_RS19650 0.32 +1.6
258,832 + LRK55_RS19650 0.50 +2.9
258,833 - LRK55_RS19650 0.50 +0.3
258,833 - LRK55_RS19650 0.50 +0.3
258,833 - LRK55_RS19650 0.50 +0.2
258,833 - LRK55_RS19650 0.50 +0.5
258,836 - LRK55_RS19650 0.51 +0.8
258,836 - LRK55_RS19650 0.51 +0.7
259,006 + -0.6
259,006 + -0.6
259,007 - +0.8
259,007 - -1.2
259,007 - -0.7
259,068 + +0.2
259,068 + -0.1
259,068 + -0.1
259,069 - +1.0
259,069 - +0.6
259,069 - -2.9
259,082 - -0.4
259,082 - +1.3
259,137 - +0.1
259,399 + LRK55_RS19655 0.46 +2.2
259,465 + LRK55_RS19655 0.57 +0.1
259,465 + LRK55_RS19655 0.57 +0.8
259,465 + LRK55_RS19655 0.57 +0.1
259,465 + LRK55_RS19655 0.57 +1.6
259,465 + LRK55_RS19655 0.57 -0.2
259,465 + LRK55_RS19655 0.57 +0.4
259,465 + LRK55_RS19655 0.57 +0.2
259,465 + LRK55_RS19655 0.57 -1.1
259,465 + LRK55_RS19655 0.57 +0.3
259,465 + LRK55_RS19655 0.57 -0.3
259,465 + LRK55_RS19655 0.57 +1.2
259,466 - LRK55_RS19655 0.57 +0.6
259,466 - LRK55_RS19655 0.57 -0.4
259,466 - LRK55_RS19655 0.57 -0.5
259,466 - LRK55_RS19655 0.57 -2.4
259,466 - LRK55_RS19655 0.57 +0.2

Or see this region's nucleotide sequence