Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS19100

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS19095 and LRK55_RS19100 are separated by 25 nucleotidesLRK55_RS19100 and LRK55_RS19105 are separated by 8 nucleotides LRK55_RS19095: LRK55_RS19095 - HAMP domain-containing sensor histidine kinase, at 157,868 to 159,076 _RS19095 LRK55_RS19100: LRK55_RS19100 - response regulator transcription factor, at 159,102 to 159,779 _RS19100 LRK55_RS19105: LRK55_RS19105 - efflux RND transporter permease subunit, at 159,788 to 162,922 _RS19105 Position (kb) 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 158.339 kb on - strand, within LRK55_RS19095at 158.382 kb on - strand, within LRK55_RS19095at 158.382 kb on - strand, within LRK55_RS19095at 158.508 kb on + strand, within LRK55_RS19095at 158.509 kb on - strand, within LRK55_RS19095at 158.677 kb on + strand, within LRK55_RS19095at 158.677 kb on + strand, within LRK55_RS19095at 158.677 kb on + strand, within LRK55_RS19095at 158.677 kb on + strand, within LRK55_RS19095at 158.678 kb on - strand, within LRK55_RS19095at 158.678 kb on - strand, within LRK55_RS19095at 158.678 kb on - strand, within LRK55_RS19095at 158.678 kb on - strand, within LRK55_RS19095at 158.678 kb on - strand, within LRK55_RS19095at 158.678 kb on - strand, within LRK55_RS19095at 158.678 kb on - strand, within LRK55_RS19095at 158.681 kb on + strand, within LRK55_RS19095at 158.681 kb on + strand, within LRK55_RS19095at 158.681 kb on + strand, within LRK55_RS19095at 158.681 kb on + strand, within LRK55_RS19095at 158.681 kb on + strand, within LRK55_RS19095at 158.681 kb on + strand, within LRK55_RS19095at 158.757 kb on + strand, within LRK55_RS19095at 158.758 kb on - strand, within LRK55_RS19095at 158.758 kb on - strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.793 kb on + strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.794 kb on - strand, within LRK55_RS19095at 158.822 kb on + strand, within LRK55_RS19095at 158.822 kb on + strand, within LRK55_RS19095at 158.823 kb on - strand, within LRK55_RS19095at 158.823 kb on - strand, within LRK55_RS19095at 158.823 kb on - strand, within LRK55_RS19095at 158.823 kb on - strand, within LRK55_RS19095at 158.823 kb on - strand, within LRK55_RS19095at 158.823 kb on - strand, within LRK55_RS19095at 158.823 kb on - strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.892 kb on + strand, within LRK55_RS19095at 158.893 kb on - strand, within LRK55_RS19095at 158.893 kb on - strand, within LRK55_RS19095at 158.893 kb on - strand, within LRK55_RS19095at 158.893 kb on - strand, within LRK55_RS19095at 158.893 kb on - strand, within LRK55_RS19095at 158.893 kb on - strand, within LRK55_RS19095at 158.898 kb on + strand, within LRK55_RS19095at 158.898 kb on + strand, within LRK55_RS19095at 158.898 kb on + strand, within LRK55_RS19095at 158.898 kb on + strand, within LRK55_RS19095at 158.898 kb on + strand, within LRK55_RS19095at 158.899 kb on - strand, within LRK55_RS19095at 158.899 kb on - strand, within LRK55_RS19095at 158.899 kb on - strand, within LRK55_RS19095at 158.899 kb on - strand, within LRK55_RS19095at 158.926 kb on + strand, within LRK55_RS19095at 158.926 kb on + strand, within LRK55_RS19095at 158.926 kb on + strand, within LRK55_RS19095at 158.926 kb on + strand, within LRK55_RS19095at 158.927 kb on - strand, within LRK55_RS19095at 158.927 kb on - strand, within LRK55_RS19095at 158.927 kb on - strand, within LRK55_RS19095at 158.927 kb on - strand, within LRK55_RS19095at 158.927 kb on - strand, within LRK55_RS19095at 158.927 kb on - strand, within LRK55_RS19095at 159.104 kb on - strandat 159.149 kb on + strandat 159.247 kb on - strand, within LRK55_RS19100at 159.379 kb on + strand, within LRK55_RS19100at 159.487 kb on + strand, within LRK55_RS19100at 159.487 kb on + strand, within LRK55_RS19100at 159.488 kb on - strand, within LRK55_RS19100at 159.680 kb on + strand, within LRK55_RS19100at 159.681 kb on - strand, within LRK55_RS19100at 159.681 kb on - strand, within LRK55_RS19100at 159.724 kb on + strandat 159.755 kb on + strandat 159.756 kb on - strandat 159.821 kb on - strandat 159.841 kb on - strandat 160.087 kb on - strandat 160.087 kb on - strandat 160.120 kb on + strand, within LRK55_RS19105at 160.120 kb on + strand, within LRK55_RS19105at 160.194 kb on - strand, within LRK55_RS19105at 160.365 kb on + strand, within LRK55_RS19105at 160.365 kb on + strand, within LRK55_RS19105at 160.365 kb on + strand, within LRK55_RS19105at 160.365 kb on + strand, within LRK55_RS19105at 160.366 kb on - strand, within LRK55_RS19105at 160.366 kb on - strand, within LRK55_RS19105at 160.366 kb on - strand, within LRK55_RS19105at 160.498 kb on - strand, within LRK55_RS19105at 160.498 kb on - strand, within LRK55_RS19105at 160.516 kb on - strand, within LRK55_RS19105at 160.545 kb on + strand, within LRK55_RS19105at 160.545 kb on + strand, within LRK55_RS19105at 160.545 kb on + strand, within LRK55_RS19105at 160.545 kb on + strand, within LRK55_RS19105at 160.545 kb on + strand, within LRK55_RS19105at 160.545 kb on + strand, within LRK55_RS19105at 160.545 kb on + strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.546 kb on - strand, within LRK55_RS19105at 160.650 kb on + strand, within LRK55_RS19105at 160.751 kb on + strand, within LRK55_RS19105at 160.751 kb on + strand, within LRK55_RS19105at 160.752 kb on - strand, within LRK55_RS19105at 160.752 kb on - strand, within LRK55_RS19105at 160.752 kb on - strand, within LRK55_RS19105

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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158,339 - LRK55_RS19095 0.39 -0.6
158,382 - LRK55_RS19095 0.43 -1.2
158,382 - LRK55_RS19095 0.43 -2.3
158,508 + LRK55_RS19095 0.53 +0.2
158,509 - LRK55_RS19095 0.53 +1.0
158,677 + LRK55_RS19095 0.67 -1.3
158,677 + LRK55_RS19095 0.67 -0.8
158,677 + LRK55_RS19095 0.67 -1.0
158,677 + LRK55_RS19095 0.67 -0.3
158,678 - LRK55_RS19095 0.67 +0.2
158,678 - LRK55_RS19095 0.67 -0.9
158,678 - LRK55_RS19095 0.67 -0.8
158,678 - LRK55_RS19095 0.67 -2.0
158,678 - LRK55_RS19095 0.67 +2.6
158,678 - LRK55_RS19095 0.67 +0.7
158,678 - LRK55_RS19095 0.67 -0.6
158,681 + LRK55_RS19095 0.67 -1.6
158,681 + LRK55_RS19095 0.67 -1.2
158,681 + LRK55_RS19095 0.67 -1.0
158,681 + LRK55_RS19095 0.67 -1.6
158,681 + LRK55_RS19095 0.67 -1.3
158,681 + LRK55_RS19095 0.67 -1.9
158,757 + LRK55_RS19095 0.74 -0.0
158,758 - LRK55_RS19095 0.74 -0.7
158,758 - LRK55_RS19095 0.74 -1.2
158,793 + LRK55_RS19095 0.77 -1.8
158,793 + LRK55_RS19095 0.77 -1.7
158,793 + LRK55_RS19095 0.77 -0.2
158,793 + LRK55_RS19095 0.77 -0.1
158,793 + LRK55_RS19095 0.77 -0.0
158,793 + LRK55_RS19095 0.77 -0.9
158,793 + LRK55_RS19095 0.77 -0.8
158,793 + LRK55_RS19095 0.77 +0.8
158,793 + LRK55_RS19095 0.77 +0.6
158,793 + LRK55_RS19095 0.77 +0.8
158,793 + LRK55_RS19095 0.77 -1.6
158,794 - LRK55_RS19095 0.77 +0.5
158,794 - LRK55_RS19095 0.77 -0.8
158,794 - LRK55_RS19095 0.77 -0.4
158,794 - LRK55_RS19095 0.77 -0.4
158,794 - LRK55_RS19095 0.77 +0.1
158,794 - LRK55_RS19095 0.77 -2.8
158,794 - LRK55_RS19095 0.77 -2.3
158,794 - LRK55_RS19095 0.77 -1.1
158,794 - LRK55_RS19095 0.77 +0.1
158,822 + LRK55_RS19095 0.79 -0.8
158,822 + LRK55_RS19095 0.79 -1.0
158,823 - LRK55_RS19095 0.79 +0.1
158,823 - LRK55_RS19095 0.79 -0.8
158,823 - LRK55_RS19095 0.79 -0.3
158,823 - LRK55_RS19095 0.79 -0.1
158,823 - LRK55_RS19095 0.79 +0.3
158,823 - LRK55_RS19095 0.79 -1.0
158,823 - LRK55_RS19095 0.79 -1.0
158,892 + LRK55_RS19095 0.85 -0.8
158,892 + LRK55_RS19095 0.85 -1.3
158,892 + LRK55_RS19095 0.85 +0.6
158,892 + LRK55_RS19095 0.85 -0.6
158,892 + LRK55_RS19095 0.85 +0.2
158,892 + LRK55_RS19095 0.85 -2.2
158,892 + LRK55_RS19095 0.85 -0.2
158,892 + LRK55_RS19095 0.85 -1.8
158,892 + LRK55_RS19095 0.85 -1.4
158,892 + LRK55_RS19095 0.85 -1.9
158,893 - LRK55_RS19095 0.85 -0.0
158,893 - LRK55_RS19095 0.85 -2.1
158,893 - LRK55_RS19095 0.85 +0.5
158,893 - LRK55_RS19095 0.85 -0.4
158,893 - LRK55_RS19095 0.85 +0.2
158,893 - LRK55_RS19095 0.85 -0.2
158,898 + LRK55_RS19095 0.85 +0.6
158,898 + LRK55_RS19095 0.85 +1.4
158,898 + LRK55_RS19095 0.85 -3.2
158,898 + LRK55_RS19095 0.85 -0.8
158,898 + LRK55_RS19095 0.85 -3.2
158,899 - LRK55_RS19095 0.85 +0.7
158,899 - LRK55_RS19095 0.85 -1.6
158,899 - LRK55_RS19095 0.85 -0.7
158,899 - LRK55_RS19095 0.85 -0.1
158,926 + LRK55_RS19095 0.88 -1.0
158,926 + LRK55_RS19095 0.88 -0.8
158,926 + LRK55_RS19095 0.88 -2.3
158,926 + LRK55_RS19095 0.88 -2.1
158,927 - LRK55_RS19095 0.88 -2.1
158,927 - LRK55_RS19095 0.88 -0.8
158,927 - LRK55_RS19095 0.88 -0.2
158,927 - LRK55_RS19095 0.88 -2.8
158,927 - LRK55_RS19095 0.88 -0.2
158,927 - LRK55_RS19095 0.88 -0.3
159,104 - -2.3
159,149 + -0.2
159,247 - LRK55_RS19100 0.21 -1.0
159,379 + LRK55_RS19100 0.41 -0.0
159,487 + LRK55_RS19100 0.57 -0.9
159,487 + LRK55_RS19100 0.57 +0.6
159,488 - LRK55_RS19100 0.57 +1.0
159,680 + LRK55_RS19100 0.85 -1.6
159,681 - LRK55_RS19100 0.85 -0.9
159,681 - LRK55_RS19100 0.85 -0.5
159,724 + -0.6
159,755 + +1.4
159,756 - -0.3
159,821 - +1.0
159,841 - -0.6
160,087 - +0.6
160,087 - +0.6
160,120 + LRK55_RS19105 0.11 -1.0
160,120 + LRK55_RS19105 0.11 -1.6
160,194 - LRK55_RS19105 0.13 -0.3
160,365 + LRK55_RS19105 0.18 -1.7
160,365 + LRK55_RS19105 0.18 +0.2
160,365 + LRK55_RS19105 0.18 +0.7
160,365 + LRK55_RS19105 0.18 -2.3
160,366 - LRK55_RS19105 0.18 -0.2
160,366 - LRK55_RS19105 0.18 +1.8
160,366 - LRK55_RS19105 0.18 +0.1
160,498 - LRK55_RS19105 0.23 +0.4
160,498 - LRK55_RS19105 0.23 +1.6
160,516 - LRK55_RS19105 0.23 -0.0
160,545 + LRK55_RS19105 0.24 +0.0
160,545 + LRK55_RS19105 0.24 +0.7
160,545 + LRK55_RS19105 0.24 +0.4
160,545 + LRK55_RS19105 0.24 -0.5
160,545 + LRK55_RS19105 0.24 -1.9
160,545 + LRK55_RS19105 0.24 +0.3
160,545 + LRK55_RS19105 0.24 +0.3
160,546 - LRK55_RS19105 0.24 +0.6
160,546 - LRK55_RS19105 0.24 +1.2
160,546 - LRK55_RS19105 0.24 +0.4
160,546 - LRK55_RS19105 0.24 -0.7
160,546 - LRK55_RS19105 0.24 -0.1
160,546 - LRK55_RS19105 0.24 -1.0
160,546 - LRK55_RS19105 0.24 +2.2
160,546 - LRK55_RS19105 0.24 +2.1
160,546 - LRK55_RS19105 0.24 -0.7
160,546 - LRK55_RS19105 0.24 +0.3
160,546 - LRK55_RS19105 0.24 -0.3
160,546 - LRK55_RS19105 0.24 +0.6
160,546 - LRK55_RS19105 0.24 -1.7
160,546 - LRK55_RS19105 0.24 +0.3
160,650 + LRK55_RS19105 0.27 -0.6
160,751 + LRK55_RS19105 0.31 -1.3
160,751 + LRK55_RS19105 0.31 -0.8
160,752 - LRK55_RS19105 0.31 +1.6
160,752 - LRK55_RS19105 0.31 -0.2
160,752 - LRK55_RS19105 0.31 -0.4

Or see this region's nucleotide sequence