Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS17755

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
3,857,271	+				+1.4
3,857,271	+				-1.9
3,857,271	+				-1.2
3,857,271	+				+0.5
3,857,271	+				-0.9
3,857,271	+				-0.7
3,857,271	+				-0.5
3,857,271	+				+0.7
3,857,271	+				+0.8
3,857,271	+				-0.3
3,857,271	+				-0.1
3,857,271	+				+0.4
3,857,272	-				-2.1
3,857,272	-				-0.2
3,857,272	-				-0.7
3,857,272	-				-1.2
3,857,272	-				-1.3
3,857,272	-				+0.2
3,857,272	-				+2.0
3,857,272	-				-2.4
3,857,272	-				-2.5
3,857,272	-				-1.3
3,857,272	-				-0.2
3,857,272	-				-0.3
3,857,272	-				-1.0
3,857,272	-				-1.1
3,857,441	-		LRK55_RS17750	0.21	-0.1
3,857,768	+		LRK55_RS17750	0.53	-1.5
3,857,768	+		LRK55_RS17750	0.53	-1.3
3,857,768	+		LRK55_RS17750	0.53	-2.1
3,857,768	+		LRK55_RS17750	0.53	-0.5
3,857,768	+		LRK55_RS17750	0.53	+1.5
3,857,768	+		LRK55_RS17750	0.53	-1.5
3,857,769	-		LRK55_RS17750	0.54	-1.5
3,857,769	-		LRK55_RS17750	0.54	-0.9
3,857,769	-		LRK55_RS17750	0.54	-0.9
3,857,769	-		LRK55_RS17750	0.54	-0.6
3,857,769	-		LRK55_RS17750	0.54	-2.8
3,857,769	-		LRK55_RS17750	0.54	-0.9
3,857,769	-		LRK55_RS17750	0.54	-0.7
3,857,769	-		LRK55_RS17750	0.54	-3.1
3,857,769	-		LRK55_RS17750	0.54	-1.5
3,857,769	-		LRK55_RS17750	0.54	+0.5
3,857,919	-		LRK55_RS17750	0.69	-1.9
3,858,023	+		LRK55_RS17750	0.79	-1.5
3,858,023	+		LRK55_RS17750	0.79	-0.5
3,858,023	+		LRK55_RS17750	0.79	+0.1
3,858,024	-		LRK55_RS17750	0.79	+1.5
3,858,024	-		LRK55_RS17750	0.79	+2.0
3,858,051	-		LRK55_RS17750	0.82	+0.7
3,858,122	+		LRK55_RS17750	0.89	+1.1
3,858,122	+		LRK55_RS17750	0.89	-1.0
3,858,122	+		LRK55_RS17750	0.89	+0.0
3,858,122	+		LRK55_RS17750	0.89	-0.9
3,858,122	+		LRK55_RS17750	0.89	-0.4
3,858,122	+		LRK55_RS17750	0.89	+1.0
3,858,123	-		LRK55_RS17750	0.89	-1.2
3,858,123	-		LRK55_RS17750	0.89	+0.2
3,858,123	-		LRK55_RS17750	0.89	-1.5
3,858,123	-		LRK55_RS17750	0.89	-0.9
3,858,123	-		LRK55_RS17750	0.89	-1.9
3,858,123	-		LRK55_RS17750	0.89	-0.9
3,858,123	-		LRK55_RS17750	0.89	+0.2
3,858,123	-		LRK55_RS17750	0.89	-0.7
3,858,123	-		LRK55_RS17750	0.89	-2.9
3,858,421	+		LRK55_RS17755	0.55	-0.5
3,858,421	+		LRK55_RS17755	0.55	+0.7
3,858,668	+				-0.4
3,858,668	+				+1.3
3,858,669	-				-1.0
3,858,925	-		LRK55_RS17760	0.32	+0.7
3,859,031	+		LRK55_RS17760	0.49	-1.1
3,859,031	+		LRK55_RS17760	0.49	-0.4
3,859,032	-		LRK55_RS17760	0.50	-1.3
3,859,069	+		LRK55_RS17760	0.56	+0.4
3,859,069	+		LRK55_RS17760	0.56	-0.9
3,859,069	+		LRK55_RS17760	0.56	+0.6
3,859,069	+		LRK55_RS17760	0.56	+1.8
3,859,070	-		LRK55_RS17760	0.56	+0.5
3,859,070	-		LRK55_RS17760	0.56	-2.0
3,859,070	-		LRK55_RS17760	0.56	+0.5
3,859,070	-		LRK55_RS17760	0.56	-1.3
3,859,070	-		LRK55_RS17760	0.56	-0.1
3,859,070	-		LRK55_RS17760	0.56	-0.2
3,859,291	+				-0.5
3,859,300	+				+0.3
3,859,300	+				+1.2
3,859,300	+				+0.5
3,859,300	+				+1.5
3,859,300	+				-0.8
3,859,300	+				+1.5
3,859,300	+				+0.0
3,859,300	+				-0.0
3,859,301	-				+0.5
3,859,301	-				+0.0
3,859,301	-				-0.7
3,859,301	-				-0.9
3,859,301	-				-0.1
3,859,303	+				-0.5
3,859,303	+				+0.5
3,859,304	-				+0.5
3,859,304	-				+2.1
3,859,304	-				+0.2
3,859,396	+				+0.4
3,859,396	+				-0.6
3,859,396	+				-0.1
3,859,396	+				+1.5
3,859,397	-				+0.9
3,859,415	+				-0.5
3,859,415	+				-0.2
3,859,415	+				-0.7
3,859,415	+				-0.5
3,859,415	+				+1.6
3,859,415	+				+1.2
3,859,415	+				+0.7
3,859,415	+				+1.1
3,859,415	+				+0.3
3,859,416	-				+0.4
3,859,416	-				-0.5
3,859,416	-				+0.5
3,859,416	-				-1.5
3,859,416	-				+1.0
3,859,416	-				-1.5
3,859,416	-				-0.7
3,859,416	-				-0.9
3,859,416	-				+1.1
3,859,475	+		LRK55_RS17765	0.17	-0.2
3,859,475	+		LRK55_RS17765	0.17	-0.7
3,859,475	+		LRK55_RS17765	0.17	-0.2
3,859,475	+		LRK55_RS17765	0.17	-2.5
3,859,475	+		LRK55_RS17765	0.17	+0.7
3,859,475	+		LRK55_RS17765	0.17	-2.0
3,859,475	+		LRK55_RS17765	0.17	-0.1
3,859,476	-		LRK55_RS17765	0.18	+0.4
3,859,476	-		LRK55_RS17765	0.18	+0.3
3,859,476	-		LRK55_RS17765	0.18	-0.1
3,859,476	-		LRK55_RS17765	0.18	+0.1
3,859,476	-		LRK55_RS17765	0.18	+0.9
3,859,476	-		LRK55_RS17765	0.18	+0.3
3,859,476	-		LRK55_RS17765	0.18	+0.6
3,859,559	+		LRK55_RS17765	0.41	+0.8
3,859,559	+		LRK55_RS17765	0.41	+0.1
3,859,559	+		LRK55_RS17765	0.41	-1.2
3,859,559	+		LRK55_RS17765	0.41	-1.0
3,859,559	+		LRK55_RS17765	0.41	-0.4
3,859,559	+		LRK55_RS17765	0.41	+2.0
3,859,559	+		LRK55_RS17765	0.41	-1.5
3,859,559	+		LRK55_RS17765	0.41	+0.1
3,859,559	+		LRK55_RS17765	0.41	+0.2
3,859,559	+		LRK55_RS17765	0.41	-0.9
3,859,559	+		LRK55_RS17765	0.41	+0.9
3,859,559	+		LRK55_RS17765	0.41	+0.5
3,859,559	+		LRK55_RS17765	0.41	+0.8
3,859,559	+		LRK55_RS17765	0.41	+0.5
3,859,559	+		LRK55_RS17765	0.41	+0.5
3,859,559	+		LRK55_RS17765	0.41	+0.0
3,859,559	+		LRK55_RS17765	0.41	-0.2
3,859,559	+		LRK55_RS17765	0.41	-0.2
3,859,559	+		LRK55_RS17765	0.41	-0.5
3,859,559	+		LRK55_RS17765	0.41	+0.6
3,859,559	+		LRK55_RS17765	0.41	+1.5
3,859,559	+		LRK55_RS17765	0.41	-1.1
3,859,559	+		LRK55_RS17765	0.41	+0.2
3,859,559	+		LRK55_RS17765	0.41	-0.1
3,859,559	+		LRK55_RS17765	0.41	-0.2
3,859,559	+		LRK55_RS17765	0.41	+0.3
3,859,559	+		LRK55_RS17765	0.41	-1.1
3,859,559	+		LRK55_RS17765	0.41	-0.5
3,859,559	+		LRK55_RS17765	0.41	+0.6
3,859,559	+		LRK55_RS17765	0.41	+0.6
3,859,559	+		LRK55_RS17765	0.41	+2.0
3,859,559	+		LRK55_RS17765	0.41	+1.7
3,859,559	+		LRK55_RS17765	0.41	-0.1
3,859,559	+		LRK55_RS17765	0.41	-1.7
3,859,559	+		LRK55_RS17765	0.41	+0.7
3,859,559	+		LRK55_RS17765	0.41	+0.2
3,859,559	+		LRK55_RS17765	0.41	-0.1
3,859,560	-		LRK55_RS17765	0.41	-0.2
3,859,560	-		LRK55_RS17765	0.41	+0.4
3,859,560	-		LRK55_RS17765	0.41	+0.9
3,859,560	-		LRK55_RS17765	0.41	+0.1
3,859,560	-		LRK55_RS17765	0.41	+0.3
3,859,560	-		LRK55_RS17765	0.41	-2.4
3,859,560	-		LRK55_RS17765	0.41	+1.2
3,859,560	-		LRK55_RS17765	0.41	-0.2
3,859,560	-		LRK55_RS17765	0.41	+1.8
3,859,560	-		LRK55_RS17765	0.41	-0.2
3,859,560	-		LRK55_RS17765	0.41	-0.2
3,859,560	-		LRK55_RS17765	0.41	+0.6
3,859,560	-		LRK55_RS17765	0.41	-0.7
3,859,560	-		LRK55_RS17765	0.41	-1.1
3,859,560	-		LRK55_RS17765	0.41	-0.1
3,859,560	-		LRK55_RS17765	0.41	+0.9
3,859,560	-		LRK55_RS17765	0.41	+0.2
3,859,560	-		LRK55_RS17765	0.41	-0.3
3,859,560	-		LRK55_RS17765	0.41	-0.9
3,859,560	-		LRK55_RS17765	0.41	+0.5
3,859,560	-		LRK55_RS17765	0.41	-0.5
3,859,560	-		LRK55_RS17765	0.41	-0.5
3,859,560	-		LRK55_RS17765	0.41	+1.1
3,859,560	-		LRK55_RS17765	0.41	-0.9
3,859,560	-		LRK55_RS17765	0.41	+0.2
3,859,560	-		LRK55_RS17765	0.41	+0.7
3,859,560	-		LRK55_RS17765	0.41	-0.2
3,859,560	-		LRK55_RS17765	0.41	+1.7
3,859,560	-		LRK55_RS17765	0.41	+0.9
3,859,560	-		LRK55_RS17765	0.41	-1.1
3,859,560	-		LRK55_RS17765	0.41	-2.4
3,859,560	-		LRK55_RS17765	0.41	+2.9
3,859,560	-		LRK55_RS17765	0.41	-1.2
3,859,560	-		LRK55_RS17765	0.41	+0.9
3,859,560	-		LRK55_RS17765	0.41	-0.1
3,859,560	-		LRK55_RS17765	0.41	+0.4
3,859,560	-		LRK55_RS17765	0.41	-1.7
3,859,560	-		LRK55_RS17765	0.41	-1.5
3,859,560	-		LRK55_RS17765	0.41	+0.3
3,859,560	-		LRK55_RS17765	0.41	-1.1
3,859,560	-		LRK55_RS17765	0.41	+0.6
3,859,560	-		LRK55_RS17765	0.41	+0.7