Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS15035

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
3,306,488	+		LRK55_RS15025	0.87	-0.5
3,306,488	+		LRK55_RS15025	0.87	+1.6
3,306,488	+		LRK55_RS15025	0.87	-1.3
3,306,488	+		LRK55_RS15025	0.87	-1.0
3,306,489	-		LRK55_RS15025	0.87	-0.0
3,306,489	-		LRK55_RS15025	0.87	-1.2
3,306,489	-		LRK55_RS15025	0.87	-0.0
3,306,489	-		LRK55_RS15025	0.87	+1.1
3,306,489	-		LRK55_RS15025	0.87	-1.7
3,306,489	-		LRK55_RS15025	0.87	+0.3
3,306,530	+		LRK55_RS15025	0.89	-0.7
3,306,530	+		LRK55_RS15025	0.89	+1.8
3,306,530	+		LRK55_RS15025	0.89	+1.3
3,306,530	+		LRK55_RS15025	0.89	-0.0
3,306,531	-		LRK55_RS15025	0.89	+0.5
3,306,531	-		LRK55_RS15025	0.89	+0.5
3,306,531	-		LRK55_RS15025	0.89	-0.9
3,306,531	-		LRK55_RS15025	0.89	-0.3
3,306,531	-		LRK55_RS15025	0.89	+0.7
3,306,531	-		LRK55_RS15025	0.89	-0.9
3,306,590	+				-0.2
3,306,591	-				-1.7
3,306,591	-				+0.3
3,306,591	-				+1.0
3,306,591	-				-0.3
3,306,591	-				-0.3
3,306,591	-				-1.5
3,306,591	-				+0.6
3,306,591	-				-1.1
3,306,591	-				+2.7
3,306,623	+				-0.4
3,306,623	+				-1.3
3,306,623	+				-0.8
3,306,623	+				-0.6
3,306,623	+				+0.6
3,306,623	+				-0.7
3,306,623	+				+0.7
3,306,623	+				+0.3
3,306,624	-				-0.8
3,306,624	-				-0.0
3,306,624	-				-0.6
3,306,624	-				+0.6
3,306,624	-				+0.4
3,306,626	+				+0.1
3,306,627	-				-0.6
3,306,881	+				-0.4
3,306,881	+				-0.4
3,306,881	+				-0.2
3,306,881	+				+1.1
3,306,881	+				+0.9
3,306,881	+				+1.2
3,306,882	-				+3.9
3,306,882	-				-0.9
3,306,914	+				+0.8
3,306,914	+				+0.3
3,306,914	+				+0.9
3,306,914	+				-0.7
3,306,915	-				-1.5
3,306,915	-				+0.9
3,306,915	-				-0.5
3,306,915	-				+0.2
3,306,915	-				+0.1
3,306,933	-				-0.3
3,306,943	+				-0.8
3,306,943	+				-1.1
3,306,943	+				+0.5
3,306,943	+				+1.7
3,306,944	-				+0.1
3,306,944	-				-0.5
3,306,944	-				-0.6
3,306,944	-				-0.3
3,306,944	-				+1.9
3,306,947	+				-0.1
3,306,947	+				-1.3
3,306,947	+				-0.4
3,306,947	+				+0.5
3,306,947	+				+0.5
3,306,947	+				-2.3
3,306,947	+				+0.3
3,306,947	+				+0.6
3,306,947	+				-0.8
3,306,947	+				+0.8
3,306,948	-				-0.9
3,306,948	-				+0.2
3,306,948	-				-1.5
3,306,948	-				-2.0
3,307,059	+		LRK55_RS15030	0.20	-0.4
3,307,175	+		LRK55_RS15030	0.41	-1.3
3,307,175	+		LRK55_RS15030	0.41	-0.3
3,307,413	+		LRK55_RS15030	0.85	-0.3
3,307,413	+		LRK55_RS15030	0.85	+0.3
3,307,422	-		LRK55_RS15030	0.87	-0.4
3,307,422	-		LRK55_RS15030	0.87	-0.3
3,307,422	-		LRK55_RS15030	0.87	-2.0
3,307,462	-				-1.7
3,307,462	-				+0.7
3,307,716	+				-1.5
3,307,716	+				+0.7
3,307,716	+				-0.4
3,307,716	+				+1.7
3,307,717	-				-1.2
3,307,717	-				-1.0
3,307,717	-				-0.4
3,307,717	-				-1.8
3,307,717	-				-1.5
3,307,717	-				-0.2
3,307,749	+		LRK55_RS15040	0.13	-0.6
3,307,749	+		LRK55_RS15040	0.13	+0.7
3,307,749	+		LRK55_RS15040	0.13	-0.5
3,307,749	+		LRK55_RS15040	0.13	-1.9
3,307,749	+		LRK55_RS15040	0.13	-0.2
3,307,753	-		LRK55_RS15040	0.14	-2.3
3,307,753	-		LRK55_RS15040	0.14	+2.3
3,307,753	-		LRK55_RS15040	0.14	-0.0
3,307,753	-		LRK55_RS15040	0.14	-1.3
3,307,753	-		LRK55_RS15040	0.14	+0.6
3,307,753	-		LRK55_RS15040	0.14	+1.3
3,307,801	-		LRK55_RS15040	0.27	-0.4
3,307,801	-		LRK55_RS15040	0.27	-2.1
3,307,801	-		LRK55_RS15040	0.27	-0.2
3,307,801	-		LRK55_RS15040	0.27	+0.0
3,307,801	-		LRK55_RS15040	0.27	-1.5
3,307,801	-		LRK55_RS15040	0.27	+0.1
3,307,801	-		LRK55_RS15040	0.27	-0.1
3,307,801	-		LRK55_RS15040	0.27	-0.1
3,307,801	-		LRK55_RS15040	0.27	+0.5
3,307,801	-		LRK55_RS15040	0.27	-2.9
3,307,801	-		LRK55_RS15040	0.27	-0.3
3,307,801	-		LRK55_RS15040	0.27	-0.2
3,307,903	+		LRK55_RS15040	0.54	+0.2
3,307,935	+		LRK55_RS15040	0.62	-0.5
3,307,950	-		LRK55_RS15040	0.66	-1.1
3,307,950	-		LRK55_RS15040	0.66	-1.5
3,307,950	-		LRK55_RS15040	0.66	+2.3
3,307,950	-		LRK55_RS15040	0.66	-0.5
3,307,950	-		LRK55_RS15040	0.66	+2.3
3,307,950	-		LRK55_RS15040	0.66	-0.5
3,307,950	-		LRK55_RS15040	0.66	-1.1
3,307,950	-		LRK55_RS15040	0.66	-0.5
3,308,008	+		LRK55_RS15040	0.82	+0.9
3,308,008	+		LRK55_RS15040	0.82	-1.1
3,308,009	-		LRK55_RS15040	0.82	-0.9
3,308,009	-		LRK55_RS15040	0.82	-0.5
3,308,009	-		LRK55_RS15040	0.82	-1.0
3,308,009	-		LRK55_RS15040	0.82	+0.3
3,308,009	-		LRK55_RS15040	0.82	+1.5
3,308,009	-		LRK55_RS15040	0.82	+0.2
3,308,041	+				+0.7
3,308,041	+				-0.3
3,308,041	+				-1.3
3,308,041	+				+0.7
3,308,041	+				-0.0
3,308,041	+				+0.2
3,308,041	+				-3.2
3,308,042	-				+0.9
3,308,042	-				+0.4
3,308,042	-				+3.1
3,308,042	-				-0.0
3,308,042	-				-0.8
3,308,042	-				-0.7
3,308,042	-				+1.3
3,308,070	+				+1.3
3,308,070	+				-1.9
3,308,070	+				-1.2
3,308,070	+				-0.1
3,308,070	+				-1.5
3,308,070	+				-2.5
3,308,070	+				-0.1
3,308,070	+				-0.8
3,308,070	+				+0.2
3,308,071	-				-0.0
3,308,071	-				-1.7
3,308,071	-				-0.6
3,308,071	-				+0.6
3,308,071	-				-1.7
3,308,071	-				-0.3
3,308,071	-				-2.4
3,308,074	+				-2.0
3,308,074	+				+0.2
3,308,074	+				-0.6
3,308,074	+				-1.0
3,308,075	-				+0.3
3,308,075	-				-2.4
3,308,075	-				+0.6
3,308,075	-				+0.8
3,308,163	-				-0.3
3,308,163	-				-1.5
3,308,163	-				+1.3
3,308,202	+				-0.4
3,308,382	+				-1.8
3,308,382	+				-1.3
3,308,383	-				-0.7
3,308,383	-				-0.3
3,308,383	-				+0.1
3,308,383	-				-0.0
3,308,384	+				-2.1
3,308,384	+				-1.3
3,308,384	+				-0.5
3,308,384	+				-1.0
3,308,384	+				-1.2
3,308,384	+				-1.8
3,308,384	+				+0.1
3,308,384	+				-0.3
3,308,384	+				+0.3
3,308,385	-				-0.7
3,308,385	-				-0.7
3,308,385	-				-3.0
3,308,385	-				+0.3
3,308,385	-				+1.1
3,308,385	-				+0.9
3,308,385	-				-0.4
3,308,385	-				-0.6
3,308,385	-				+0.5
3,308,385	-				-0.3
3,308,385	-				-0.1
3,308,439	+				-0.7
3,308,439	+				-1.1
3,308,439	+				+1.3
3,308,439	+				+0.4
3,308,440	-				-0.4
3,308,440	-				-0.5
3,308,440	-				-0.0
3,308,440	-				+0.5
3,308,455	-				-1.3
3,308,572	+				-2.0
3,308,572	+				+0.3
3,308,572	+				-0.6
3,308,632	+				+1.3
3,308,632	+				-0.1
3,308,633	-				-1.5
3,308,633	-				+0.7
3,308,633	-				+1.6
3,308,633	-				+0.1
3,308,644	-				-0.7
3,308,644	-				-0.6
3,308,644	-				-1.3