Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS14190

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
3,136,730	-				+0.0
3,136,730	-				-1.5
3,136,730	-				+0.4
3,136,730	-				-0.0
3,136,730	-				-1.2
3,136,730	-				+1.3
3,136,730	-				-0.3
3,136,856	-		LRK55_RS14185	0.20	-1.3
3,136,862	-		LRK55_RS14185	0.21	-0.0
3,136,862	-		LRK55_RS14185	0.21	-1.7
3,136,943	-		LRK55_RS14185	0.34	-2.0
3,136,943	-		LRK55_RS14185	0.34	-2.7
3,136,943	-		LRK55_RS14185	0.34	+0.7
3,136,943	-		LRK55_RS14185	0.34	-1.7
3,137,027	-		LRK55_RS14185	0.47	-1.5
3,137,105	-		LRK55_RS14185	0.60	+0.3
3,137,105	-		LRK55_RS14185	0.60	-0.3
3,137,156	-		LRK55_RS14185	0.68	-1.7
3,137,225	-		LRK55_RS14185	0.79	+0.4
3,137,240	-		LRK55_RS14185	0.81	-0.7
3,137,246	-		LRK55_RS14185	0.82	-1.0
3,137,246	-		LRK55_RS14185	0.82	-2.0
3,137,246	-		LRK55_RS14185	0.82	-1.5
3,137,246	-		LRK55_RS14185	0.82	-0.7
3,137,419	-				-0.0
3,137,419	-				-1.3
3,137,419	-				+0.6
3,137,440	+				-0.5
3,137,440	+				-1.7
3,137,440	+				-0.9
3,137,440	+				+0.3
3,137,440	+				-0.4
3,137,440	+				-0.1
3,137,440	+				+0.2
3,137,440	+				-0.3
3,137,440	+				+0.3
3,137,440	+				-1.1
3,137,440	+				-0.2
3,137,441	-				+0.4
3,137,441	-				-1.6
3,137,441	-				-0.6
3,137,441	-				-1.3
3,137,441	-				+0.7
3,137,441	-				-0.1
3,137,441	-				-0.6
3,137,441	-				+1.0
3,137,441	-				-0.9
3,137,441	-				+0.3
3,137,441	-				+0.2
3,137,441	-				-1.3
3,137,441	-				-0.1
3,137,441	-				-0.9
3,137,441	-				-0.2
3,137,461	+				-2.5
3,137,461	+				-0.8
3,137,462	+				+0.1
3,137,462	-				-0.2
3,137,462	-				-0.0
3,137,462	-				-0.9
3,137,472	+				-2.4
3,137,472	+				-0.1
3,137,533	+				+0.1
3,137,575	+				-1.3
3,137,592	-				+1.0
3,137,609	+				+1.3
3,137,609	+				+1.7
3,137,609	+				+0.9
3,137,609	+				+1.3
3,137,609	+				-0.3
3,137,609	+				+1.1
3,137,609	+				-0.3
3,137,609	+				+1.3
3,137,610	-				+1.7
3,137,610	-				+1.1
3,137,610	-				+1.2
3,137,610	-				+0.3
3,137,610	-				+0.7
3,137,610	-				+0.1
3,137,610	-				+1.0
3,137,610	-				+0.9
3,137,610	-				+1.4
3,137,610	-				+1.8
3,137,610	-				+1.3
3,137,610	-				+0.9
3,137,610	-				-2.5
3,137,708	+		LRK55_RS14190	0.13	+0.0
3,137,708	+		LRK55_RS14190	0.13	+1.0
3,137,708	+		LRK55_RS14190	0.13	+0.3
3,137,708	+		LRK55_RS14190	0.13	+1.6
3,137,708	+		LRK55_RS14190	0.13	+0.4
3,137,709	-		LRK55_RS14190	0.13	+1.1
3,137,709	-		LRK55_RS14190	0.13	+1.1
3,137,709	-		LRK55_RS14190	0.13	+1.9
3,137,729	+		LRK55_RS14190	0.14	+0.1
3,137,729	+		LRK55_RS14190	0.14	+0.2
3,137,729	+		LRK55_RS14190	0.14	-0.4
3,137,729	+		LRK55_RS14190	0.14	-0.3
3,137,729	+		LRK55_RS14190	0.14	+0.3
3,137,729	+		LRK55_RS14190	0.14	+1.0
3,137,729	+		LRK55_RS14190	0.14	+0.5
3,137,730	-		LRK55_RS14190	0.15	+1.3
3,137,730	-		LRK55_RS14190	0.15	+1.4
3,137,730	-		LRK55_RS14190	0.15	+1.4
3,137,730	-		LRK55_RS14190	0.15	-1.1
3,137,730	-		LRK55_RS14190	0.15	-0.2
3,137,828	+		LRK55_RS14190	0.23	-0.3
3,137,828	+		LRK55_RS14190	0.23	+0.1
3,137,828	+		LRK55_RS14190	0.23	+1.1
3,137,828	+		LRK55_RS14190	0.23	+1.1
3,137,828	+		LRK55_RS14190	0.23	-1.2
3,137,828	+		LRK55_RS14190	0.23	-0.0
3,137,828	+		LRK55_RS14190	0.23	+1.3
3,137,828	+		LRK55_RS14190	0.23	+0.3
3,137,828	+		LRK55_RS14190	0.23	+0.4
3,137,829	-		LRK55_RS14190	0.23	+0.5
3,137,829	-		LRK55_RS14190	0.23	+1.2
3,137,829	-		LRK55_RS14190	0.23	+0.8
3,137,969	+		LRK55_RS14190	0.34	+3.3
3,137,969	+		LRK55_RS14190	0.34	+2.4
3,137,970	-		LRK55_RS14190	0.34	+0.4
3,137,970	-		LRK55_RS14190	0.34	+1.3
3,137,970	-		LRK55_RS14190	0.34	+0.3
3,138,011	+		LRK55_RS14190	0.38	+0.2
3,138,011	+		LRK55_RS14190	0.38	+3.2
3,138,011	+		LRK55_RS14190	0.38	-0.1
3,138,011	+		LRK55_RS14190	0.38	+1.0
3,138,011	+		LRK55_RS14190	0.38	+1.1
3,138,011	+		LRK55_RS14190	0.38	+0.3
3,138,012	-		LRK55_RS14190	0.38	+0.3
3,138,012	-		LRK55_RS14190	0.38	+1.3
3,138,012	-		LRK55_RS14190	0.38	+1.3
3,138,012	-		LRK55_RS14190	0.38	+0.7
3,138,012	-		LRK55_RS14190	0.38	+0.4
3,138,012	-		LRK55_RS14190	0.38	+1.5
3,138,012	-		LRK55_RS14190	0.38	+1.3
3,138,534	-		LRK55_RS14190	0.80	+2.0
3,138,534	-		LRK55_RS14190	0.80	+0.3
3,138,534	-		LRK55_RS14190	0.80	-0.1
3,138,534	-		LRK55_RS14190	0.80	+1.7
3,138,773	+				-0.7
3,138,773	+				+0.1
3,138,773	+				-0.8
3,138,774	-				+0.4
3,138,774	-				+0.2
3,138,774	-				-2.3
3,138,774	-				+0.3
3,138,851	+				-1.0
3,138,851	+				-1.0
3,138,851	+				+0.4
3,138,851	+				-0.5
3,138,851	+				+1.0
3,138,852	-				+0.4
3,138,852	-				+1.3
3,138,852	-				-0.6
3,138,852	-				-0.8
3,138,852	-				-0.7
3,138,852	-				-0.4
3,138,854	-				+1.1
3,138,857	+				+0.3
3,138,857	+				-1.1
3,138,858	-				+0.5
3,138,858	-				+1.1
3,138,858	-				+0.9
3,139,454	-		LRK55_RS14195	0.89	+1.1
3,139,454	-		LRK55_RS14195	0.89	+3.1
3,139,620	+				-0.4
3,139,620	+				-2.6
3,139,620	+				-1.6
3,139,620	+				+0.3
3,139,620	+				-0.9
3,139,620	+				+0.6
3,139,620	+				-0.5
3,139,620	+				+0.0
3,139,620	+				+1.3
3,139,620	+				-0.8
3,139,620	+				+1.0
3,139,620	+				-0.4
3,139,620	+				-0.2
3,139,621	-				-1.3
3,139,621	-				+0.5
3,139,621	-				-0.7
3,139,621	-				-0.3
3,139,621	-				+0.9
3,139,621	-				-1.8
3,139,621	-				+0.9
3,139,621	-				+0.9
3,139,621	-				-2.9
3,139,711	+				+0.4
3,139,711	+				-0.2
3,139,711	+				-1.1
3,139,711	+				+0.2
3,139,711	+				-2.4
3,139,711	+				-2.2
3,139,711	+				-0.3
3,139,711	+				+0.3
3,139,711	+				-0.3
3,139,711	+				-1.0
3,139,711	+				+0.2
3,139,711	+				-1.0
3,139,711	+				-1.7
3,139,711	+				+0.5
3,139,711	+				+0.7
3,139,711	+				+0.2
3,139,711	+				-0.5
3,139,712	-				-0.3
3,139,712	-				+0.9
3,139,712	-				-2.2
3,139,712	-				-1.4
3,139,712	-				-0.3
3,139,715	+				-1.5
3,139,715	+				-0.3
3,139,715	+				+0.4
3,139,715	+				+1.9
3,139,715	+				+2.3
3,139,715	+				+0.8
3,139,715	+				+0.1
3,139,715	+				-0.5
3,139,715	+				-0.7
3,139,715	+				-0.7
3,139,715	+				+0.5
3,139,715	+				+1.4
3,139,715	+				-0.9
3,139,715	+				+0.2
3,139,715	+				-0.1
3,139,715	+				+0.2
3,139,715	+				+0.5
3,139,715	+				-0.9
3,139,715	+				+0.1
3,139,715	+				-0.6
3,139,715	+				-0.8
3,139,715	+				-0.3
3,139,715	+				-2.2
3,139,715	+				-0.3
3,139,715	+				+1.3
3,139,715	+				-0.1
3,139,715	+				+0.3
3,139,715	+				-0.2
3,139,715	+				-0.2
3,139,715	+				-1.4
3,139,715	+				-1.0
3,139,715	+				-0.0
3,139,715	+				+0.3
3,139,715	+				+0.5
3,139,716	-				-0.3
3,139,716	-				-1.3
3,139,716	-				-1.0
3,139,716	-				-1.3
3,139,716	-				-0.7
3,139,716	-				-1.3
3,139,716	-				+0.3
3,139,716	-				+0.5
3,139,716	-				+0.3
3,139,716	-				-1.5
3,139,719	+				+1.1
3,139,719	+				-0.2
3,139,720	-				+0.3
3,139,726	+				-0.2
3,139,727	-				-0.0
3,139,727	-				-2.3