Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS13025

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
2,908,885	+				-0.5
2,908,886	-				-0.7
2,908,886	-				-0.1
2,908,914	-				-1.3
2,908,914	-				-0.5
2,908,914	-				+0.3
2,908,943	+				+0.2
2,908,954	+				-0.5
2,908,954	+				-0.6
2,908,955	-				-0.4
2,908,955	-				-0.3
2,908,955	-				+0.1
2,908,958	+				+1.0
2,908,958	+				-1.6
2,908,958	+				+0.0
2,908,958	+				-0.3
2,908,958	+				-0.5
2,908,958	+				+0.2
2,908,958	+				-0.1
2,908,958	+				+1.3
2,908,959	-				-0.5
2,908,959	-				-1.8
2,908,959	-				-2.0
2,908,959	-				+0.3
2,908,961	+				-0.0
2,908,961	+				+0.7
2,908,961	+				-1.8
2,908,961	+				-0.7
2,908,962	-				+0.2
2,908,962	-				+1.3
2,908,962	-				-2.0
2,909,014	-				-1.7
2,909,014	-				+0.7
2,909,104	+				+0.2
2,909,104	+				-0.3
2,909,104	+				-0.0
2,909,157	+				-0.7
2,909,157	+				-0.5
2,909,157	+				+0.1
2,909,157	+				+1.3
2,909,158	-				-0.9
2,909,158	-				+0.8
2,909,158	-				-0.8
2,909,158	-				-2.1
2,909,242	+		LRK55_RS13015	0.17	-0.7
2,909,242	+		LRK55_RS13015	0.17	+0.6
2,909,242	+		LRK55_RS13015	0.17	+0.9
2,909,242	+		LRK55_RS13015	0.17	+0.0
2,909,242	+		LRK55_RS13015	0.17	+1.8
2,909,242	+		LRK55_RS13015	0.17	-0.0
2,909,242	+		LRK55_RS13015	0.17	+0.6
2,909,243	-		LRK55_RS13015	0.17	-0.4
2,909,243	-		LRK55_RS13015	0.17	-0.7
2,909,243	-		LRK55_RS13015	0.17	-0.2
2,909,287	+		LRK55_RS13015	0.35	+0.3
2,909,287	+		LRK55_RS13015	0.35	-0.0
2,909,326	+		LRK55_RS13015	0.51	+0.3
2,909,331	+		LRK55_RS13015	0.53	-1.6
2,909,400	+		LRK55_RS13015	0.81	-0.3
2,909,400	+		LRK55_RS13015	0.81	+0.9
2,909,400	+		LRK55_RS13015	0.81	+0.7
2,909,401	-		LRK55_RS13015	0.82	-0.9
2,909,552	+		LRK55_RS13020	0.34	-0.3
2,909,553	-		LRK55_RS13020	0.34	+1.1
2,909,553	-		LRK55_RS13020	0.34	-0.5
2,909,553	-		LRK55_RS13020	0.34	+0.3
2,909,553	-		LRK55_RS13020	0.34	-0.4
2,909,553	-		LRK55_RS13020	0.34	-2.1
2,909,559	-		LRK55_RS13020	0.37	+0.2
2,909,559	-		LRK55_RS13020	0.37	+0.7
2,909,559	-		LRK55_RS13020	0.37	-0.3
2,909,559	-		LRK55_RS13020	0.37	-2.1
2,909,610	+		LRK55_RS13020	0.57	-0.7
2,909,610	+		LRK55_RS13020	0.57	-0.2
2,909,610	+		LRK55_RS13020	0.57	-0.3
2,909,611	-		LRK55_RS13020	0.58	-0.8
2,909,616	+		LRK55_RS13020	0.60	-0.4
2,909,616	+		LRK55_RS13020	0.60	-1.0
2,909,617	-		LRK55_RS13020	0.60	-0.5
2,909,669	+		LRK55_RS13020	0.81	-0.3
2,909,670	-		LRK55_RS13020	0.82	-0.9
2,909,670	-		LRK55_RS13020	0.82	-2.1
2,909,706	-				-1.1
2,909,771	-				+0.6
2,909,784	+				+0.2
2,909,806	+				+0.3
2,909,806	+				-0.1
2,909,807	-				-0.6
2,909,807	-				+0.9
2,909,807	-				-0.0
2,909,884	+		LRK55_RS13025	0.15	+0.7
2,909,885	-		LRK55_RS13025	0.15	-0.1
2,909,885	-		LRK55_RS13025	0.15	-0.7
2,910,113	+		LRK55_RS13025	0.50	+0.2
2,910,114	-		LRK55_RS13025	0.50	-0.5
2,910,126	+		LRK55_RS13025	0.52	-1.5
2,910,126	+		LRK55_RS13025	0.52	+0.1
2,910,127	-		LRK55_RS13025	0.52	-1.3
2,910,175	+		LRK55_RS13025	0.59	-0.4
2,910,176	-		LRK55_RS13025	0.60	-0.7
2,910,280	+		LRK55_RS13025	0.75	-0.7
2,910,280	+		LRK55_RS13025	0.75	+0.1
2,910,315	+		LRK55_RS13025	0.81	-0.6
2,910,315	+		LRK55_RS13025	0.81	-0.5
2,910,315	+		LRK55_RS13025	0.81	+0.8
2,910,315	+		LRK55_RS13025	0.81	+1.5
2,910,315	+		LRK55_RS13025	0.81	+0.5
2,910,329	-		LRK55_RS13025	0.83	-1.3
2,910,329	-		LRK55_RS13025	0.83	+0.3
2,910,329	-		LRK55_RS13025	0.83	-0.6
2,910,336	+		LRK55_RS13025	0.84	-1.8
2,910,336	+		LRK55_RS13025	0.84	-0.7
2,910,337	-		LRK55_RS13025	0.84	+0.8
2,910,337	-		LRK55_RS13025	0.84	+0.7
2,910,337	-		LRK55_RS13025	0.84	-0.3
2,910,381	+				-0.8
2,910,381	+				-0.1
2,910,382	-				-0.8
2,910,412	+				+1.7
2,910,510	+				+0.1
2,910,510	+				-0.1
2,910,511	-				+0.0
2,910,511	-				-0.4
2,910,545	+				-0.6
2,910,545	+				+0.1
2,910,546	-				+0.1
2,910,546	-				-2.0
2,910,558	-				-1.2
2,910,567	+				-0.2
2,910,621	-				+0.3
2,910,657	-				-0.2
2,910,657	-				+0.9
2,910,720	+				+0.1
2,910,772	+				+0.2
2,910,772	+				+1.4
2,910,773	-				-1.3
2,910,825	-				-0.6
2,910,825	-				-0.0
2,910,825	-				+0.3
2,910,932	+				+0.4
2,910,933	-				-0.5
2,910,938	+				-0.1
2,910,939	-				-0.6
2,910,939	-				-1.0
2,910,989	-				-0.3
2,910,989	-				-1.1
2,910,989	-				-0.1
2,911,058	-				-0.4
2,911,058	-				-0.3
2,911,108	-				+2.9
2,911,225	+		LRK55_RS13030	0.27	+0.3
2,911,226	-		LRK55_RS13030	0.28	+0.5
2,911,226	-		LRK55_RS13030	0.28	-0.3
2,911,226	-		LRK55_RS13030	0.28	-0.4
2,911,226	-		LRK55_RS13030	0.28	+0.1
2,911,295	+		LRK55_RS13030	0.45	-1.5
2,911,295	+		LRK55_RS13030	0.45	-3.5
2,911,295	+		LRK55_RS13030	0.45	-3.5
2,911,295	+		LRK55_RS13030	0.45	-2.0
2,911,295	+		LRK55_RS13030	0.45	-1.9
2,911,295	+		LRK55_RS13030	0.45	-2.8
2,911,295	+		LRK55_RS13030	0.45	-3.5
2,911,295	+		LRK55_RS13030	0.45	-1.4
2,911,295	+		LRK55_RS13030	0.45	-4.0
2,911,295	+		LRK55_RS13030	0.45	-0.3
2,911,295	+		LRK55_RS13030	0.45	-2.7
2,911,295	+		LRK55_RS13030	0.45	-3.1
2,911,295	+		LRK55_RS13030	0.45	-2.0
2,911,296	-		LRK55_RS13030	0.45	-1.5
2,911,296	-		LRK55_RS13030	0.45	-0.9
2,911,296	-		LRK55_RS13030	0.45	+0.4
2,911,296	-		LRK55_RS13030	0.45	-1.3
2,911,296	-		LRK55_RS13030	0.45	+0.5
2,911,296	-		LRK55_RS13030	0.45	-1.5
2,911,296	-		LRK55_RS13030	0.45	+0.2
2,911,296	-		LRK55_RS13030	0.45	-0.6
2,911,296	-		LRK55_RS13030	0.45	-0.5
2,911,296	-		LRK55_RS13030	0.45	-0.4
2,911,296	-		LRK55_RS13030	0.45	-0.9
2,911,296	-		LRK55_RS13030	0.45	+0.1
2,911,296	-		LRK55_RS13030	0.45	+0.0
2,911,296	-		LRK55_RS13030	0.45	-2.1
2,911,296	-		LRK55_RS13030	0.45	+0.7
2,911,373	+		LRK55_RS13030	0.64	-3.5
2,911,374	-		LRK55_RS13030	0.64	-1.0
2,911,374	-		LRK55_RS13030	0.64	-0.9
2,911,376	+		LRK55_RS13030	0.65	-2.3
2,911,376	+		LRK55_RS13030	0.65	-1.9
2,911,376	+		LRK55_RS13030	0.65	-2.8
2,911,376	+		LRK55_RS13030	0.65	-1.8
2,911,376	+		LRK55_RS13030	0.65	-3.0
2,911,377	-		LRK55_RS13030	0.65	+0.1
2,911,377	-		LRK55_RS13030	0.65	-0.3
2,911,377	-		LRK55_RS13030	0.65	-2.7
2,911,377	-		LRK55_RS13030	0.65	+0.1
2,911,377	-		LRK55_RS13030	0.65	+0.1