Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09785

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
2,139,695	-		LRK55_RS09780	0.19	+0.8
2,139,695	-		LRK55_RS09780	0.19	-0.4
2,139,695	-		LRK55_RS09780	0.19	-1.2
2,139,695	-		LRK55_RS09780	0.19	-0.2
2,139,695	-		LRK55_RS09780	0.19	+0.2
2,139,862	+		LRK55_RS09780	0.34	+1.6
2,139,862	+		LRK55_RS09780	0.34	-0.2
2,139,862	+		LRK55_RS09780	0.34	+0.4
2,139,863	-		LRK55_RS09780	0.34	+1.1
2,139,863	-		LRK55_RS09780	0.34	-0.5
2,139,863	-		LRK55_RS09780	0.34	+0.7
2,139,916	+		LRK55_RS09780	0.39	+0.1
2,139,916	+		LRK55_RS09780	0.39	+1.3
2,139,916	+		LRK55_RS09780	0.39	+0.2
2,139,916	+		LRK55_RS09780	0.39	+1.3
2,139,916	+		LRK55_RS09780	0.39	+0.8
2,139,916	+		LRK55_RS09780	0.39	+0.1
2,139,916	+		LRK55_RS09780	0.39	-0.7
2,139,916	+		LRK55_RS09780	0.39	+0.5
2,139,916	+		LRK55_RS09780	0.39	+0.3
2,139,916	+		LRK55_RS09780	0.39	+0.1
2,139,916	+		LRK55_RS09780	0.39	+0.8
2,139,916	+		LRK55_RS09780	0.39	-1.3
2,139,916	+		LRK55_RS09780	0.39	-0.1
2,139,916	+		LRK55_RS09780	0.39	+0.3
2,139,916	+		LRK55_RS09780	0.39	-0.9
2,139,916	+		LRK55_RS09780	0.39	-0.2
2,139,916	+		LRK55_RS09780	0.39	+0.4
2,139,916	+		LRK55_RS09780	0.39	+0.4
2,139,916	+		LRK55_RS09780	0.39	-0.3
2,139,916	+		LRK55_RS09780	0.39	+0.5
2,139,916	+		LRK55_RS09780	0.39	-0.3
2,139,916	+		LRK55_RS09780	0.39	-0.2
2,139,916	+		LRK55_RS09780	0.39	+0.3
2,139,916	+		LRK55_RS09780	0.39	+0.4
2,139,916	+		LRK55_RS09780	0.39	+0.5
2,139,916	+		LRK55_RS09780	0.39	-0.2
2,139,916	+		LRK55_RS09780	0.39	-0.7
2,139,916	+		LRK55_RS09780	0.39	+0.3
2,139,916	+		LRK55_RS09780	0.39	+0.6
2,139,916	+		LRK55_RS09780	0.39	+0.9
2,139,917	-		LRK55_RS09780	0.39	+1.8
2,139,917	-		LRK55_RS09780	0.39	-0.5
2,139,917	-		LRK55_RS09780	0.39	-0.7
2,139,917	-		LRK55_RS09780	0.39	+0.2
2,139,917	-		LRK55_RS09780	0.39	+0.4
2,139,917	-		LRK55_RS09780	0.39	+0.1
2,139,917	-		LRK55_RS09780	0.39	+0.4
2,139,917	-		LRK55_RS09780	0.39	+0.5
2,139,917	-		LRK55_RS09780	0.39	-0.1
2,139,917	-		LRK55_RS09780	0.39	-0.7
2,139,917	-		LRK55_RS09780	0.39	-2.5
2,139,917	-		LRK55_RS09780	0.39	-0.0
2,139,917	-		LRK55_RS09780	0.39	-0.3
2,139,917	-		LRK55_RS09780	0.39	-0.8
2,139,917	-		LRK55_RS09780	0.39	+0.2
2,139,917	-		LRK55_RS09780	0.39	-2.4
2,139,917	-		LRK55_RS09780	0.39	-1.0
2,139,917	-		LRK55_RS09780	0.39	+1.0
2,139,917	-		LRK55_RS09780	0.39	+1.6
2,139,917	-		LRK55_RS09780	0.39	+1.3
2,139,917	-		LRK55_RS09780	0.39	+0.6
2,139,917	-		LRK55_RS09780	0.39	-0.3
2,139,917	-		LRK55_RS09780	0.39	-0.3
2,139,917	-		LRK55_RS09780	0.39	-1.9
2,139,917	-		LRK55_RS09780	0.39	+0.8
2,139,917	-		LRK55_RS09780	0.39	-1.3
2,140,096	+		LRK55_RS09780	0.55	+1.8
2,140,096	+		LRK55_RS09780	0.55	+1.4
2,140,097	-		LRK55_RS09780	0.55	+1.2
2,140,246	+		LRK55_RS09780	0.68	+0.0
2,140,255	+		LRK55_RS09780	0.69	-0.9
2,140,255	+		LRK55_RS09780	0.69	-0.2
2,140,255	+		LRK55_RS09780	0.69	+0.3
2,140,255	+		LRK55_RS09780	0.69	-0.5
2,140,255	+		LRK55_RS09780	0.69	+1.4
2,140,255	+		LRK55_RS09780	0.69	+0.4
2,140,255	+		LRK55_RS09780	0.69	+0.5
2,140,255	+		LRK55_RS09780	0.69	+0.3
2,140,256	-		LRK55_RS09780	0.69	+1.0
2,140,256	-		LRK55_RS09780	0.69	-1.3
2,140,256	-		LRK55_RS09780	0.69	+0.3
2,140,256	-		LRK55_RS09780	0.69	+0.8
2,140,256	-		LRK55_RS09780	0.69	+0.3
2,140,258	+		LRK55_RS09780	0.69	+0.7
2,140,258	+		LRK55_RS09780	0.69	-0.0
2,140,258	+		LRK55_RS09780	0.69	+0.6
2,140,258	+		LRK55_RS09780	0.69	-1.3
2,140,258	+		LRK55_RS09780	0.69	-0.1
2,140,258	+		LRK55_RS09780	0.69	-1.9
2,140,258	+		LRK55_RS09780	0.69	-0.4
2,140,258	+		LRK55_RS09780	0.69	+0.6
2,140,258	+		LRK55_RS09780	0.69	+2.1
2,140,258	+		LRK55_RS09780	0.69	-0.3
2,140,259	-		LRK55_RS09780	0.69	+1.8
2,140,259	-		LRK55_RS09780	0.69	-0.0
2,140,259	-		LRK55_RS09780	0.69	-0.2
2,140,259	-		LRK55_RS09780	0.69	+0.3
2,140,259	-		LRK55_RS09780	0.69	+0.5
2,140,259	-		LRK55_RS09780	0.69	-0.2
2,140,259	-		LRK55_RS09780	0.69	-0.3
2,140,259	-		LRK55_RS09780	0.69	-1.7
2,140,259	-		LRK55_RS09780	0.69	-1.0
2,140,259	-		LRK55_RS09780	0.69	+1.2
2,140,259	-		LRK55_RS09780	0.69	-1.0
2,140,261	+		LRK55_RS09780	0.70	+0.7
2,140,261	+		LRK55_RS09780	0.70	+1.3
2,140,261	+		LRK55_RS09780	0.70	+0.3
2,140,262	-		LRK55_RS09780	0.70	-0.3
2,140,396	+		LRK55_RS09780	0.82	+0.1
2,140,396	+		LRK55_RS09780	0.82	-0.3
2,140,396	+		LRK55_RS09780	0.82	+0.3
2,140,396	+		LRK55_RS09780	0.82	+2.3
2,140,397	-		LRK55_RS09780	0.82	-1.0
2,140,397	-		LRK55_RS09780	0.82	-0.6
2,140,397	-		LRK55_RS09780	0.82	-0.5
2,140,397	-		LRK55_RS09780	0.82	+1.4
2,140,492	+				+0.4
2,140,492	+				+1.1
2,140,492	+				+0.3
2,140,492	+				+0.6
2,140,492	+				+0.6
2,140,492	+				+0.1
2,140,492	+				+0.7
2,140,493	-				-0.4
2,140,493	-				+0.0
2,140,493	-				-0.6
2,140,493	-				+2.1
2,140,493	-				+0.1
2,140,537	+				-0.5
2,140,537	+				+1.4
2,140,537	+				-0.4
2,140,600	+				+0.0
2,140,600	+				+0.2
2,140,600	+				+0.5
2,140,600	+				+1.4
2,140,600	+				-0.3
2,140,601	-				+0.3
2,140,601	-				+0.3
2,140,601	-				-0.1
2,140,601	-				+0.8
2,140,601	-				+1.3
2,140,601	-				-1.1
2,140,601	-				-0.3
2,140,633	+				-1.0
2,140,634	-				-2.0
2,140,634	-				+0.4
2,140,683	+				-0.2
2,140,684	-				+1.3
2,140,684	-				-3.1
2,140,745	+				-0.1
2,140,745	+				+0.2
2,140,745	+				-0.4
2,140,745	+				-0.0
2,140,745	+				+0.8
2,140,746	-				+0.3
2,140,746	-				-0.7
2,140,746	-				+0.3
2,140,746	-				+0.1
2,140,946	+		LRK55_RS09785	0.21	-1.4
2,140,947	-		LRK55_RS09785	0.21	-0.6
2,140,947	-		LRK55_RS09785	0.21	+0.4
2,140,957	-		LRK55_RS09785	0.22	+0.1
2,141,034	+		LRK55_RS09785	0.29	+1.3
2,141,034	+		LRK55_RS09785	0.29	+0.7
2,141,034	+		LRK55_RS09785	0.29	+1.5
2,141,035	-		LRK55_RS09785	0.29	+0.9
2,141,452	+		LRK55_RS09785	0.64	+0.3
2,141,453	-		LRK55_RS09785	0.64	-1.3
2,141,453	-		LRK55_RS09785	0.64	+0.3
2,141,755	+				-1.1
2,141,755	+				-0.7
2,141,755	+				-0.1
2,141,755	+				-0.3
2,141,755	+				-1.5
2,141,755	+				-0.1
2,141,756	-				-0.1
2,141,756	-				-0.3
2,141,756	-				+0.4
2,141,756	-				-0.3
2,141,756	-				-0.4
2,141,756	-				-0.2
2,141,763	-				-0.9
2,141,847	+				-1.3
2,141,937	+				-0.9
2,141,937	+				-1.5
2,141,937	+				-1.5
2,141,937	+				-1.3
2,141,937	+				-0.4
2,141,937	+				-1.1
2,141,937	+				-0.6
2,141,939	+				-2.3
2,141,939	+				+1.3
2,141,939	+				-1.3
2,141,939	+				-2.4
2,141,939	+				-0.1
2,141,939	+				-1.4
2,141,939	+				-0.7
2,141,939	+				-1.2
2,141,939	+				-2.2
2,141,939	+				-3.3
2,141,939	+				-0.9
2,141,939	+				-1.1
2,141,939	+				-1.5
2,141,939	+				-0.5
2,141,939	+				-0.3
2,141,939	+				-1.3
2,141,939	+				-0.9
2,141,939	+				+0.5
2,141,939	+				-1.3
2,141,939	+				-1.1
2,141,939	+				-1.5
2,141,939	+				+0.0
2,141,939	+				+0.5
2,141,939	+				-0.7
2,141,939	+				-2.3
2,141,941	+				-1.7
2,141,941	+				-0.7
2,141,941	+				+0.1
2,141,941	+				-0.4
2,141,941	+				-3.2
2,141,941	+				-3.1
2,141,941	+				-1.7
2,141,941	+				+1.6
2,141,941	+				-1.9
2,141,941	+				-1.3
2,141,941	+				-3.4
2,141,941	+				-1.4
2,141,941	+				+0.2
2,141,941	+				-0.7
2,141,941	+				-1.1
2,141,941	+				-1.9
2,141,941	+				-2.4
2,141,941	+				+0.0
2,141,941	+				-0.7
2,141,941	+				-0.3
2,141,941	+				+0.3
2,141,941	+				-1.5
2,141,941	+				+2.3
2,141,943	+				-0.1
2,141,943	+				-1.3
2,141,943	+				-1.0
2,141,943	+				+1.3
2,141,943	+				-0.3
2,141,943	+				-2.6
2,141,943	+				-1.7
2,141,943	+				-1.2
2,141,943	+				+0.1
2,141,943	+				-1.2
2,141,943	+				-2.0
2,141,943	+				-0.6
2,141,943	+				-1.0
2,141,943	+				-0.8
2,141,943	+				+0.3
2,141,943	+				-1.7
2,141,943	+				-0.7
2,141,943	+				-0.2
2,141,943	+				-1.9
2,141,943	+				-0.9
2,141,943	+				+0.3
2,141,943	+				-0.2
2,141,943	+				-1.7