Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS09475

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
2,060,481	+		LRK55_RS09465	0.77	-2.9
2,060,481	+		LRK55_RS09465	0.77	-1.4
2,060,481	+		LRK55_RS09465	0.77	-2.1
2,060,481	+		LRK55_RS09465	0.77	-1.3
2,060,481	+		LRK55_RS09465	0.77	-1.8
2,060,481	+		LRK55_RS09465	0.77	-3.2
2,060,482	-		LRK55_RS09465	0.77	-1.4
2,060,547	+		LRK55_RS09465	0.85	-0.8
2,060,547	+		LRK55_RS09465	0.85	-2.2
2,060,548	-		LRK55_RS09465	0.86	-2.7
2,060,548	-		LRK55_RS09465	0.86	-2.1
2,060,548	-		LRK55_RS09465	0.86	-2.9
2,060,550	-		LRK55_RS09465	0.86	-2.8
2,060,583	+				-0.9
2,060,583	+				-0.6
2,060,583	+				-0.6
2,060,583	+				+0.2
2,060,584	-				-2.6
2,060,584	-				-1.9
2,060,584	-				-3.1
2,060,586	+				-0.4
2,060,586	+				-1.4
2,060,586	+				-0.1
2,060,586	+				-1.2
2,060,586	+				-0.6
2,060,586	+				-1.4
2,060,586	+				-0.4
2,060,587	+				+0.0
2,060,587	-				-1.2
2,060,587	-				-0.6
2,060,587	-				-2.1
2,060,587	-				-2.1
2,060,587	-				-1.4
2,060,587	-				+1.8
2,060,587	-				-1.7
2,060,587	-				-3.4
2,060,587	-				-0.0
2,060,587	-				-1.4
2,060,652	+				-1.0
2,060,652	+				+0.2
2,060,652	+				-1.6
2,060,653	-				+1.3
2,060,653	-				+0.0
2,060,653	-				+0.8
2,060,653	-				+0.3
2,060,654	-				-0.5
2,060,822	+				+1.6
2,060,822	+				-0.7
2,060,822	+				-0.8
2,060,822	+				-0.1
2,060,822	+				-0.0
2,060,823	-				-0.0
2,060,823	-				-0.5
2,060,823	-				-0.5
2,060,823	-				+0.3
2,060,823	-				+0.4
2,060,877	+				+0.5
2,060,877	+				-1.1
2,060,877	+				+0.3
2,060,877	+				+2.4
2,060,877	+				-1.0
2,060,877	+				-0.2
2,060,877	+				+0.2
2,060,877	+				+1.0
2,060,877	+				-1.0
2,060,878	-				-1.2
2,060,878	-				-1.9
2,060,878	-				+2.2
2,060,878	-				+0.5
2,060,878	-				-1.2
2,060,878	-				+0.1
2,060,878	-				-0.8
2,060,878	-				+1.5
2,061,138	+		LRK55_RS09470	0.53	-1.9
2,061,138	+		LRK55_RS09470	0.53	-2.1
2,061,138	+		LRK55_RS09470	0.53	+0.0
2,061,138	+		LRK55_RS09470	0.53	+0.4
2,061,138	+		LRK55_RS09470	0.53	+0.5
2,061,138	+		LRK55_RS09470	0.53	-1.0
2,061,138	+		LRK55_RS09470	0.53	+0.5
2,061,138	+		LRK55_RS09470	0.53	-0.7
2,061,138	+		LRK55_RS09470	0.53	-0.9
2,061,138	+		LRK55_RS09470	0.53	-1.0
2,061,138	+		LRK55_RS09470	0.53	+0.7
2,061,138	+		LRK55_RS09470	0.53	+1.0
2,061,139	-		LRK55_RS09470	0.53	-0.4
2,061,139	-		LRK55_RS09470	0.53	-0.2
2,061,139	-		LRK55_RS09470	0.53	+0.4
2,061,139	-		LRK55_RS09470	0.53	-0.4
2,061,139	-		LRK55_RS09470	0.53	+1.0
2,061,318	+		LRK55_RS09470	0.87	-1.0
2,061,318	+		LRK55_RS09470	0.87	+0.4
2,061,318	+		LRK55_RS09470	0.87	+0.1
2,061,318	+		LRK55_RS09470	0.87	-0.0
2,061,318	+		LRK55_RS09470	0.87	+0.3
2,061,319	-		LRK55_RS09470	0.87	+0.1
2,061,319	-		LRK55_RS09470	0.87	-0.5
2,061,319	-		LRK55_RS09470	0.87	+0.9
2,061,319	-		LRK55_RS09470	0.87	+0.4
2,061,321	+		LRK55_RS09470	0.87	+0.6
2,061,321	+		LRK55_RS09470	0.87	-0.8
2,061,321	+		LRK55_RS09470	0.87	+0.5
2,061,321	+		LRK55_RS09470	0.87	-1.4
2,061,321	+		LRK55_RS09470	0.87	+0.3
2,061,321	+		LRK55_RS09470	0.87	-1.2
2,061,321	+		LRK55_RS09470	0.87	+0.6
2,061,321	+		LRK55_RS09470	0.87	+0.0
2,061,321	+		LRK55_RS09470	0.87	+0.1
2,061,321	+		LRK55_RS09470	0.87	-0.2
2,061,321	+		LRK55_RS09470	0.87	+2.5
2,061,321	+		LRK55_RS09470	0.87	+0.2
2,061,321	+		LRK55_RS09470	0.87	-0.4
2,061,321	+		LRK55_RS09470	0.87	-0.8
2,061,321	+		LRK55_RS09470	0.87	-0.4
2,061,321	+		LRK55_RS09470	0.87	+0.6
2,061,321	+		LRK55_RS09470	0.87	+0.8
2,061,322	-		LRK55_RS09470	0.87	-0.5
2,061,322	-		LRK55_RS09470	0.87	-0.6
2,061,322	-		LRK55_RS09470	0.87	+0.0
2,061,322	-		LRK55_RS09470	0.87	-0.2
2,061,322	-		LRK55_RS09470	0.87	+1.3
2,061,322	-		LRK55_RS09470	0.87	+0.9
2,061,322	-		LRK55_RS09470	0.87	-2.2
2,061,322	-		LRK55_RS09470	0.87	-1.4
2,061,322	-		LRK55_RS09470	0.87	+0.5
2,061,322	-		LRK55_RS09470	0.87	-0.7
2,061,322	-		LRK55_RS09470	0.87	-0.1
2,061,322	-		LRK55_RS09470	0.87	-2.2
2,061,322	-		LRK55_RS09470	0.87	+0.2
2,061,330	+		LRK55_RS09470	0.89	-0.1
2,061,330	+		LRK55_RS09470	0.89	+1.9
2,061,331	-		LRK55_RS09470	0.89	+0.9
2,061,331	-		LRK55_RS09470	0.89	+0.4
2,061,723	-		LRK55_RS09475	0.17	-0.4
2,062,142	+		LRK55_RS09475	0.40	+1.1
2,062,142	+		LRK55_RS09475	0.40	-0.8
2,062,142	+		LRK55_RS09475	0.40	+0.1
2,062,143	-		LRK55_RS09475	0.40	+0.2
2,062,143	-		LRK55_RS09475	0.40	+0.1
2,062,143	-		LRK55_RS09475	0.40	-0.0
2,062,238	+		LRK55_RS09475	0.46	+0.3
2,062,238	+		LRK55_RS09475	0.46	-0.2
2,062,239	-		LRK55_RS09475	0.46	-0.5
2,062,239	-		LRK55_RS09475	0.46	+0.0
2,062,239	-		LRK55_RS09475	0.46	+0.4
2,062,239	-		LRK55_RS09475	0.46	+1.1
2,062,239	-		LRK55_RS09475	0.46	-0.6
2,062,487	+		LRK55_RS09475	0.60	-0.2
2,062,487	+		LRK55_RS09475	0.60	-0.4
2,062,488	-		LRK55_RS09475	0.60	-0.3
2,062,488	-		LRK55_RS09475	0.60	+0.6
2,062,556	+		LRK55_RS09475	0.63	+3.0
2,062,556	+		LRK55_RS09475	0.63	-1.1
2,062,556	+		LRK55_RS09475	0.63	-1.3
2,062,556	+		LRK55_RS09475	0.63	-1.6
2,062,556	+		LRK55_RS09475	0.63	-0.5
2,062,556	+		LRK55_RS09475	0.63	+0.4
2,062,556	+		LRK55_RS09475	0.63	+0.5
2,062,557	-		LRK55_RS09475	0.63	+0.5
2,062,557	-		LRK55_RS09475	0.63	+0.5
2,062,557	-		LRK55_RS09475	0.63	+0.5
2,062,557	-		LRK55_RS09475	0.63	-1.1
2,062,557	-		LRK55_RS09475	0.63	-1.9
2,062,557	-		LRK55_RS09475	0.63	+0.4
2,062,557	-		LRK55_RS09475	0.63	-1.2
2,062,557	-		LRK55_RS09475	0.63	-0.3
2,062,721	+		LRK55_RS09475	0.72	+1.0
2,062,721	+		LRK55_RS09475	0.72	+0.2
2,062,722	-		LRK55_RS09475	0.73	-0.2
2,062,722	-		LRK55_RS09475	0.73	+1.3
2,062,722	-		LRK55_RS09475	0.73	+0.6
2,062,722	-		LRK55_RS09475	0.73	+0.6
2,063,039	+				+0.0
2,063,039	+				+0.9
2,063,039	+				+1.6
2,063,330	+				-0.8
2,063,330	+				+1.2
2,063,330	+				+1.4
2,063,331	-				-1.1
2,063,331	-				+0.8
2,063,331	-				+1.5
2,063,349	-				+0.2
2,063,402	+				+0.8
2,063,402	+				-0.4
2,063,402	+				+0.3
2,063,402	+				-1.2
2,063,402	+				-0.9
2,063,402	+				+1.1
2,063,403	-				+1.1
2,063,403	-				+2.2
2,063,403	-				+1.6
2,063,456	+		LRK55_RS09480	0.14	-0.6
2,063,456	+		LRK55_RS09480	0.14	+1.6
2,063,456	+		LRK55_RS09480	0.14	+0.5
2,063,456	+		LRK55_RS09480	0.14	+0.8
2,063,457	-		LRK55_RS09480	0.14	+0.5
2,063,457	-		LRK55_RS09480	0.14	-0.7
2,063,504	+		LRK55_RS09480	0.18	+0.5
2,063,505	-		LRK55_RS09480	0.18	-1.2
2,063,505	-		LRK55_RS09480	0.18	+0.4
2,063,567	+		LRK55_RS09480	0.24	+0.4
2,063,567	+		LRK55_RS09480	0.24	+0.8
2,063,567	+		LRK55_RS09480	0.24	+0.6
2,063,567	+		LRK55_RS09480	0.24	+0.6
2,063,567	+		LRK55_RS09480	0.24	+0.4
2,063,567	+		LRK55_RS09480	0.24	-1.2
2,063,568	-		LRK55_RS09480	0.24	+0.5
2,063,568	-		LRK55_RS09480	0.24	-0.3
2,063,568	-		LRK55_RS09480	0.24	-0.7
2,063,568	-		LRK55_RS09480	0.24	+1.8
2,063,759	+		LRK55_RS09480	0.41	+1.1
2,063,759	+		LRK55_RS09480	0.41	+0.6
2,063,759	+		LRK55_RS09480	0.41	-0.0
2,063,760	-		LRK55_RS09480	0.41	+1.1
2,063,760	-		LRK55_RS09480	0.41	-0.4
2,063,885	+		LRK55_RS09480	0.52	+1.3
2,063,885	+		LRK55_RS09480	0.52	+1.4
2,063,885	+		LRK55_RS09480	0.52	+0.2
2,063,885	+		LRK55_RS09480	0.52	+0.2
2,063,885	+		LRK55_RS09480	0.52	-0.1
2,063,885	+		LRK55_RS09480	0.52	+0.3
2,063,885	+		LRK55_RS09480	0.52	+0.0
2,063,886	-		LRK55_RS09480	0.52	+0.9
2,063,886	-		LRK55_RS09480	0.52	+0.3
2,063,886	-		LRK55_RS09480	0.52	+1.2
2,063,886	-		LRK55_RS09480	0.52	+0.4
2,063,886	-		LRK55_RS09480	0.52	+0.4
2,063,886	-		LRK55_RS09480	0.52	-0.9
2,063,886	-		LRK55_RS09480	0.52	+0.5
2,063,886	-		LRK55_RS09480	0.52	+0.4
2,063,886	-		LRK55_RS09480	0.52	+0.5
2,063,886	-		LRK55_RS09480	0.52	+0.9
2,064,206	+		LRK55_RS09480	0.81	+0.6
2,064,206	+		LRK55_RS09480	0.81	+0.2
2,064,206	+		LRK55_RS09480	0.81	+0.4
2,064,206	+		LRK55_RS09480	0.81	-0.1
2,064,206	+		LRK55_RS09480	0.81	+0.2
2,064,206	+		LRK55_RS09480	0.81	+0.1
2,064,206	+		LRK55_RS09480	0.81	-0.9
2,064,206	+		LRK55_RS09480	0.81	+1.2
2,064,206	+		LRK55_RS09480	0.81	+0.6
2,064,206	+		LRK55_RS09480	0.81	+1.5
2,064,206	+		LRK55_RS09480	0.81	+2.0
2,064,206	+		LRK55_RS09480	0.81	-0.3
2,064,206	+		LRK55_RS09480	0.81	+0.9
2,064,206	+		LRK55_RS09480	0.81	+0.8
2,064,206	+		LRK55_RS09480	0.81	+0.4
2,064,207	-		LRK55_RS09480	0.81	+1.5
2,064,207	-		LRK55_RS09480	0.81	+2.2
2,064,207	-		LRK55_RS09480	0.81	-2.2
2,064,207	-		LRK55_RS09480	0.81	-0.1
2,064,207	-		LRK55_RS09480	0.81	+0.6
2,064,207	-		LRK55_RS09480	0.81	-0.5
2,064,207	-		LRK55_RS09480	0.81	-0.2
2,064,207	-		LRK55_RS09480	0.81	+1.7
2,064,207	-		LRK55_RS09480	0.81	-1.1
2,064,207	-		LRK55_RS09480	0.81	-0.2
2,064,207	-		LRK55_RS09480	0.81	+0.6
2,064,207	-		LRK55_RS09480	0.81	+0.7
2,064,207	-		LRK55_RS09480	0.81	-2.0