Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07920

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS07915 and LRK55_RS07920 are separated by 227 nucleotidesLRK55_RS07920 and LRK55_RS07925 overlap by 34 nucleotidesLRK55_RS07925 and LRK55_RS07930 are separated by 42 nucleotidesLRK55_RS07930 and LRK55_RS07935 are separated by 1 nucleotides LRK55_RS07915: LRK55_RS07915 - LysR substrate-binding domain-containing protein, at 1,743,912 to 1,744,748 _RS07915 LRK55_RS07920: LRK55_RS07920 - hypothetical protein, at 1,744,976 to 1,745,452 _RS07920 LRK55_RS07925: LRK55_RS07925 - hypothetical protein, at 1,745,419 to 1,746,021 _RS07925 LRK55_RS07930: LRK55_RS07930 - type II toxin-antitoxin system RelE/ParE family toxin, at 1,746,064 to 1,746,360 _RS07930 LRK55_RS07935: LRK55_RS07935 - DUF1778 domain-containing protein, at 1,746,362 to 1,746,646 _RS07935 Position (kb) 1744 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1744.176 kb on - strand, within LRK55_RS07915at 1744.224 kb on + strand, within LRK55_RS07915at 1744.224 kb on + strand, within LRK55_RS07915at 1744.285 kb on + strand, within LRK55_RS07915at 1744.286 kb on - strand, within LRK55_RS07915at 1744.449 kb on + strand, within LRK55_RS07915at 1745.147 kb on + strand, within LRK55_RS07920at 1745.147 kb on + strand, within LRK55_RS07920at 1745.147 kb on + strand, within LRK55_RS07920at 1745.147 kb on + strand, within LRK55_RS07920at 1745.147 kb on + strand, within LRK55_RS07920at 1745.147 kb on + strand, within LRK55_RS07920at 1745.147 kb on + strand, within LRK55_RS07920at 1745.148 kb on - strand, within LRK55_RS07920at 1745.148 kb on - strand, within LRK55_RS07920at 1745.148 kb on - strand, within LRK55_RS07920at 1745.148 kb on - strand, within LRK55_RS07920at 1745.282 kb on + strand, within LRK55_RS07920at 1745.282 kb on + strand, within LRK55_RS07920at 1745.282 kb on + strand, within LRK55_RS07920at 1745.283 kb on - strand, within LRK55_RS07920at 1745.283 kb on - strand, within LRK55_RS07920at 1745.283 kb on - strand, within LRK55_RS07920at 1745.339 kb on + strand, within LRK55_RS07920at 1745.340 kb on - strand, within LRK55_RS07920at 1745.342 kb on + strand, within LRK55_RS07920at 1745.342 kb on + strand, within LRK55_RS07920at 1745.343 kb on - strand, within LRK55_RS07920at 1745.343 kb on - strand, within LRK55_RS07920at 1745.343 kb on - strand, within LRK55_RS07920at 1745.343 kb on - strand, within LRK55_RS07920at 1745.382 kb on - strand, within LRK55_RS07920at 1745.382 kb on - strand, within LRK55_RS07920at 1745.410 kb on - strandat 1745.457 kb on - strandat 1745.755 kb on + strand, within LRK55_RS07925at 1745.755 kb on + strand, within LRK55_RS07925at 1745.756 kb on - strand, within LRK55_RS07925at 1745.756 kb on - strand, within LRK55_RS07925at 1745.756 kb on - strand, within LRK55_RS07925at 1745.905 kb on + strand, within LRK55_RS07925at 1745.905 kb on + strand, within LRK55_RS07925at 1745.905 kb on + strand, within LRK55_RS07925at 1745.906 kb on - strand, within LRK55_RS07925at 1746.137 kb on + strand, within LRK55_RS07930at 1746.137 kb on + strand, within LRK55_RS07930at 1746.137 kb on + strand, within LRK55_RS07930at 1746.143 kb on + strand, within LRK55_RS07930at 1746.143 kb on + strand, within LRK55_RS07930at 1746.143 kb on + strand, within LRK55_RS07930at 1746.143 kb on + strand, within LRK55_RS07930at 1746.143 kb on + strand, within LRK55_RS07930at 1746.143 kb on + strand, within LRK55_RS07930at 1746.143 kb on + strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.144 kb on - strand, within LRK55_RS07930at 1746.156 kb on - strand, within LRK55_RS07930at 1746.156 kb on - strand, within LRK55_RS07930at 1746.156 kb on - strand, within LRK55_RS07930

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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1,744,176 - LRK55_RS07915 0.32 +0.6
1,744,224 + LRK55_RS07915 0.37 +1.0
1,744,224 + LRK55_RS07915 0.37 +0.0
1,744,285 + LRK55_RS07915 0.45 +1.0
1,744,286 - LRK55_RS07915 0.45 +0.3
1,744,449 + LRK55_RS07915 0.64 -1.1
1,745,147 + LRK55_RS07920 0.36 +0.7
1,745,147 + LRK55_RS07920 0.36 +0.4
1,745,147 + LRK55_RS07920 0.36 +1.0
1,745,147 + LRK55_RS07920 0.36 -0.1
1,745,147 + LRK55_RS07920 0.36 -0.7
1,745,147 + LRK55_RS07920 0.36 -0.2
1,745,147 + LRK55_RS07920 0.36 -0.1
1,745,148 - LRK55_RS07920 0.36 +0.1
1,745,148 - LRK55_RS07920 0.36 +0.2
1,745,148 - LRK55_RS07920 0.36 +1.2
1,745,148 - LRK55_RS07920 0.36 -2.3
1,745,282 + LRK55_RS07920 0.64 -0.3
1,745,282 + LRK55_RS07920 0.64 -0.5
1,745,282 + LRK55_RS07920 0.64 -0.5
1,745,283 - LRK55_RS07920 0.64 +1.8
1,745,283 - LRK55_RS07920 0.64 +1.3
1,745,283 - LRK55_RS07920 0.64 -2.9
1,745,339 + LRK55_RS07920 0.76 -0.3
1,745,340 - LRK55_RS07920 0.76 +0.2
1,745,342 + LRK55_RS07920 0.77 -1.5
1,745,342 + LRK55_RS07920 0.77 -1.3
1,745,343 - LRK55_RS07920 0.77 -0.6
1,745,343 - LRK55_RS07920 0.77 +0.6
1,745,343 - LRK55_RS07920 0.77 -0.2
1,745,343 - LRK55_RS07920 0.77 +1.3
1,745,382 - LRK55_RS07920 0.85 +0.8
1,745,382 - LRK55_RS07920 0.85 +0.4
1,745,410 - +0.4
1,745,457 - -0.3
1,745,755 + LRK55_RS07925 0.56 -0.6
1,745,755 + LRK55_RS07925 0.56 -0.1
1,745,756 - LRK55_RS07925 0.56 -0.0
1,745,756 - LRK55_RS07925 0.56 +1.2
1,745,756 - LRK55_RS07925 0.56 +1.8
1,745,905 + LRK55_RS07925 0.81 +0.6
1,745,905 + LRK55_RS07925 0.81 -0.8
1,745,905 + LRK55_RS07925 0.81 -1.5
1,745,906 - LRK55_RS07925 0.81 +0.8
1,746,137 + LRK55_RS07930 0.25 +0.6
1,746,137 + LRK55_RS07930 0.25 -2.3
1,746,137 + LRK55_RS07930 0.25 -1.5
1,746,143 + LRK55_RS07930 0.27 +0.0
1,746,143 + LRK55_RS07930 0.27 -2.3
1,746,143 + LRK55_RS07930 0.27 -0.1
1,746,143 + LRK55_RS07930 0.27 +0.4
1,746,143 + LRK55_RS07930 0.27 -0.1
1,746,143 + LRK55_RS07930 0.27 +0.2
1,746,143 + LRK55_RS07930 0.27 +0.5
1,746,144 - LRK55_RS07930 0.27 -0.1
1,746,144 - LRK55_RS07930 0.27 -1.5
1,746,144 - LRK55_RS07930 0.27 -0.0
1,746,144 - LRK55_RS07930 0.27 -1.5
1,746,144 - LRK55_RS07930 0.27 +0.1
1,746,144 - LRK55_RS07930 0.27 -1.0
1,746,144 - LRK55_RS07930 0.27 -0.2
1,746,144 - LRK55_RS07930 0.27 -0.0
1,746,144 - LRK55_RS07930 0.27 +0.3
1,746,156 - LRK55_RS07930 0.31 -0.1
1,746,156 - LRK55_RS07930 0.31 +0.5
1,746,156 - LRK55_RS07930 0.31 -2.5

Or see this region's nucleotide sequence