Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07275

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS07265 and LRK55_RS07270 overlap by 4 nucleotidesLRK55_RS07270 and LRK55_RS07275 are separated by 20 nucleotidesLRK55_RS07275 and LRK55_RS07280 overlap by 4 nucleotidesLRK55_RS07280 and LRK55_RS07285 overlap by 4 nucleotides LRK55_RS07265: LRK55_RS07265 - FAD-dependent oxidoreductase, at 1,573,219 to 1,574,517 _RS07265 LRK55_RS07270: LRK55_RS07270 - DUF1365 domain-containing protein, at 1,574,514 to 1,575,314 _RS07270 LRK55_RS07275: LRK55_RS07275 - cyclopropane-fatty-acyl-phospholipid synthase family protein, at 1,575,335 to 1,576,630 _RS07275 LRK55_RS07280: LRK55_RS07280 - DUF2878 domain-containing protein, at 1,576,627 to 1,577,187 _RS07280 LRK55_RS07285: LRK55_RS07285 - DUF1295 domain-containing protein, at 1,577,184 to 1,577,966 _RS07285 Position (kb) 1575 1576 1577Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1574.383 kb on + strand, within LRK55_RS07265at 1574.383 kb on + strand, within LRK55_RS07265at 1574.418 kb on + strandat 1574.419 kb on - strandat 1574.562 kb on + strandat 1574.562 kb on + strandat 1574.562 kb on + strandat 1574.562 kb on + strandat 1574.563 kb on - strandat 1574.563 kb on - strandat 1574.563 kb on - strandat 1574.563 kb on - strandat 1574.563 kb on - strandat 1574.563 kb on - strandat 1574.563 kb on - strandat 1574.563 kb on - strandat 1574.617 kb on - strand, within LRK55_RS07270at 1574.634 kb on + strand, within LRK55_RS07270at 1574.634 kb on + strand, within LRK55_RS07270at 1574.634 kb on + strand, within LRK55_RS07270at 1574.634 kb on + strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.635 kb on - strand, within LRK55_RS07270at 1574.681 kb on - strand, within LRK55_RS07270at 1574.727 kb on + strand, within LRK55_RS07270at 1574.727 kb on + strand, within LRK55_RS07270at 1574.727 kb on + strand, within LRK55_RS07270at 1574.728 kb on - strand, within LRK55_RS07270at 1574.835 kb on + strand, within LRK55_RS07270at 1574.836 kb on - strand, within LRK55_RS07270at 1574.836 kb on - strand, within LRK55_RS07270at 1574.836 kb on - strand, within LRK55_RS07270at 1574.868 kb on + strand, within LRK55_RS07270at 1574.868 kb on + strand, within LRK55_RS07270at 1574.869 kb on - strand, within LRK55_RS07270at 1574.871 kb on + strand, within LRK55_RS07270at 1574.871 kb on + strand, within LRK55_RS07270at 1574.871 kb on + strand, within LRK55_RS07270at 1574.872 kb on - strand, within LRK55_RS07270at 1574.872 kb on - strand, within LRK55_RS07270at 1574.877 kb on + strand, within LRK55_RS07270at 1574.878 kb on - strand, within LRK55_RS07270at 1574.878 kb on - strand, within LRK55_RS07270at 1574.952 kb on + strand, within LRK55_RS07270at 1574.952 kb on + strand, within LRK55_RS07270at 1574.953 kb on - strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.054 kb on + strand, within LRK55_RS07270at 1575.055 kb on - strand, within LRK55_RS07270at 1575.055 kb on - strand, within LRK55_RS07270at 1575.055 kb on - strand, within LRK55_RS07270at 1575.055 kb on - strand, within LRK55_RS07270at 1575.055 kb on - strand, within LRK55_RS07270at 1575.055 kb on - strand, within LRK55_RS07270at 1575.055 kb on - strand, within LRK55_RS07270at 1575.545 kb on + strand, within LRK55_RS07275at 1575.590 kb on + strand, within LRK55_RS07275at 1575.590 kb on + strand, within LRK55_RS07275at 1575.590 kb on + strand, within LRK55_RS07275at 1575.590 kb on + strand, within LRK55_RS07275at 1575.590 kb on + strand, within LRK55_RS07275at 1575.590 kb on + strand, within LRK55_RS07275at 1575.591 kb on - strand, within LRK55_RS07275at 1575.591 kb on - strand, within LRK55_RS07275at 1575.591 kb on - strand, within LRK55_RS07275at 1575.591 kb on - strand, within LRK55_RS07275at 1575.591 kb on - strand, within LRK55_RS07275at 1575.591 kb on - strand, within LRK55_RS07275at 1575.773 kb on + strand, within LRK55_RS07275at 1575.774 kb on - strand, within LRK55_RS07275at 1575.774 kb on - strand, within LRK55_RS07275at 1575.824 kb on + strand, within LRK55_RS07275at 1575.824 kb on + strand, within LRK55_RS07275at 1575.825 kb on - strand, within LRK55_RS07275at 1575.825 kb on - strand, within LRK55_RS07275at 1575.825 kb on - strand, within LRK55_RS07275at 1575.825 kb on - strand, within LRK55_RS07275at 1575.825 kb on - strand, within LRK55_RS07275at 1575.825 kb on - strand, within LRK55_RS07275at 1575.825 kb on - strand, within LRK55_RS07275at 1575.983 kb on + strand, within LRK55_RS07275at 1575.984 kb on - strand, within LRK55_RS07275at 1576.115 kb on + strand, within LRK55_RS07275at 1576.116 kb on - strand, within LRK55_RS07275at 1576.116 kb on - strand, within LRK55_RS07275at 1576.163 kb on + strand, within LRK55_RS07275at 1576.163 kb on + strand, within LRK55_RS07275at 1576.163 kb on + strand, within LRK55_RS07275at 1576.175 kb on + strand, within LRK55_RS07275at 1576.175 kb on + strand, within LRK55_RS07275at 1576.176 kb on - strand, within LRK55_RS07275at 1576.176 kb on - strand, within LRK55_RS07275at 1576.253 kb on + strand, within LRK55_RS07275at 1576.397 kb on + strand, within LRK55_RS07275at 1576.397 kb on + strand, within LRK55_RS07275at 1576.397 kb on + strand, within LRK55_RS07275at 1576.398 kb on - strand, within LRK55_RS07275at 1576.499 kb on + strand, within LRK55_RS07275at 1576.500 kb on - strand, within LRK55_RS07275at 1576.509 kb on - strandat 1576.732 kb on + strand, within LRK55_RS07280at 1576.732 kb on + strand, within LRK55_RS07280at 1576.732 kb on + strand, within LRK55_RS07280at 1576.764 kb on + strand, within LRK55_RS07280at 1576.852 kb on + strand, within LRK55_RS07280at 1576.946 kb on - strand, within LRK55_RS07280at 1577.005 kb on + strand, within LRK55_RS07280at 1577.005 kb on + strand, within LRK55_RS07280at 1577.006 kb on - strand, within LRK55_RS07280at 1577.006 kb on - strand, within LRK55_RS07280

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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1,574,383 + LRK55_RS07265 0.90 -0.5
1,574,383 + LRK55_RS07265 0.90 -0.5
1,574,418 + +0.1
1,574,419 - -0.2
1,574,562 + -3.4
1,574,562 + -2.5
1,574,562 + -0.1
1,574,562 + -0.9
1,574,563 - +0.4
1,574,563 - -0.1
1,574,563 - +0.4
1,574,563 - +1.8
1,574,563 - -0.7
1,574,563 - -0.1
1,574,563 - -0.2
1,574,563 - -0.0
1,574,617 - LRK55_RS07270 0.13 +1.3
1,574,634 + LRK55_RS07270 0.15 -2.0
1,574,634 + LRK55_RS07270 0.15 -0.5
1,574,634 + LRK55_RS07270 0.15 +0.3
1,574,634 + LRK55_RS07270 0.15 -0.4
1,574,635 - LRK55_RS07270 0.15 -1.1
1,574,635 - LRK55_RS07270 0.15 -0.9
1,574,635 - LRK55_RS07270 0.15 +1.7
1,574,635 - LRK55_RS07270 0.15 +0.1
1,574,635 - LRK55_RS07270 0.15 -2.2
1,574,635 - LRK55_RS07270 0.15 +0.0
1,574,635 - LRK55_RS07270 0.15 +0.3
1,574,635 - LRK55_RS07270 0.15 -0.1
1,574,681 - LRK55_RS07270 0.21 +0.6
1,574,727 + LRK55_RS07270 0.27 -0.0
1,574,727 + LRK55_RS07270 0.27 +4.1
1,574,727 + LRK55_RS07270 0.27 +0.5
1,574,728 - LRK55_RS07270 0.27 +1.2
1,574,835 + LRK55_RS07270 0.40 -0.8
1,574,836 - LRK55_RS07270 0.40 +0.1
1,574,836 - LRK55_RS07270 0.40 +0.7
1,574,836 - LRK55_RS07270 0.40 -0.3
1,574,868 + LRK55_RS07270 0.44 -0.0
1,574,868 + LRK55_RS07270 0.44 +0.8
1,574,869 - LRK55_RS07270 0.44 +0.4
1,574,871 + LRK55_RS07270 0.45 +1.9
1,574,871 + LRK55_RS07270 0.45 +1.3
1,574,871 + LRK55_RS07270 0.45 -0.8
1,574,872 - LRK55_RS07270 0.45 -0.1
1,574,872 - LRK55_RS07270 0.45 -0.2
1,574,877 + LRK55_RS07270 0.45 +0.7
1,574,878 - LRK55_RS07270 0.45 +0.7
1,574,878 - LRK55_RS07270 0.45 -0.7
1,574,952 + LRK55_RS07270 0.55 -0.8
1,574,952 + LRK55_RS07270 0.55 -0.2
1,574,953 - LRK55_RS07270 0.55 -0.9
1,575,054 + LRK55_RS07270 0.67 -0.4
1,575,054 + LRK55_RS07270 0.67 -0.5
1,575,054 + LRK55_RS07270 0.67 -0.3
1,575,054 + LRK55_RS07270 0.67 +0.3
1,575,054 + LRK55_RS07270 0.67 +0.4
1,575,054 + LRK55_RS07270 0.67 -0.7
1,575,054 + LRK55_RS07270 0.67 -1.2
1,575,054 + LRK55_RS07270 0.67 -0.3
1,575,054 + LRK55_RS07270 0.67 +0.4
1,575,054 + LRK55_RS07270 0.67 -0.7
1,575,054 + LRK55_RS07270 0.67 -0.2
1,575,054 + LRK55_RS07270 0.67 -1.0
1,575,055 - LRK55_RS07270 0.68 +0.0
1,575,055 - LRK55_RS07270 0.68 -0.0
1,575,055 - LRK55_RS07270 0.68 +0.2
1,575,055 - LRK55_RS07270 0.68 +1.0
1,575,055 - LRK55_RS07270 0.68 -0.2
1,575,055 - LRK55_RS07270 0.68 +0.4
1,575,055 - LRK55_RS07270 0.68 +1.1
1,575,545 + LRK55_RS07275 0.16 -0.5
1,575,590 + LRK55_RS07275 0.20 +0.9
1,575,590 + LRK55_RS07275 0.20 +0.2
1,575,590 + LRK55_RS07275 0.20 -0.0
1,575,590 + LRK55_RS07275 0.20 +0.1
1,575,590 + LRK55_RS07275 0.20 -0.3
1,575,590 + LRK55_RS07275 0.20 +0.4
1,575,591 - LRK55_RS07275 0.20 -0.8
1,575,591 - LRK55_RS07275 0.20 -0.5
1,575,591 - LRK55_RS07275 0.20 -0.5
1,575,591 - LRK55_RS07275 0.20 -0.2
1,575,591 - LRK55_RS07275 0.20 -0.4
1,575,591 - LRK55_RS07275 0.20 +0.9
1,575,773 + LRK55_RS07275 0.34 +0.6
1,575,774 - LRK55_RS07275 0.34 +0.2
1,575,774 - LRK55_RS07275 0.34 +0.1
1,575,824 + LRK55_RS07275 0.38 -0.8
1,575,824 + LRK55_RS07275 0.38 +0.8
1,575,825 - LRK55_RS07275 0.38 +0.5
1,575,825 - LRK55_RS07275 0.38 +0.8
1,575,825 - LRK55_RS07275 0.38 +0.1
1,575,825 - LRK55_RS07275 0.38 -0.5
1,575,825 - LRK55_RS07275 0.38 +1.5
1,575,825 - LRK55_RS07275 0.38 -0.3
1,575,825 - LRK55_RS07275 0.38 -0.5
1,575,983 + LRK55_RS07275 0.50 -0.6
1,575,984 - LRK55_RS07275 0.50 +1.1
1,576,115 + LRK55_RS07275 0.60 +0.3
1,576,116 - LRK55_RS07275 0.60 +0.8
1,576,116 - LRK55_RS07275 0.60 -0.0
1,576,163 + LRK55_RS07275 0.64 -0.8
1,576,163 + LRK55_RS07275 0.64 +0.7
1,576,163 + LRK55_RS07275 0.64 -0.5
1,576,175 + LRK55_RS07275 0.65 +1.7
1,576,175 + LRK55_RS07275 0.65 +0.6
1,576,176 - LRK55_RS07275 0.65 +0.6
1,576,176 - LRK55_RS07275 0.65 +0.1
1,576,253 + LRK55_RS07275 0.71 -0.9
1,576,397 + LRK55_RS07275 0.82 -0.6
1,576,397 + LRK55_RS07275 0.82 -2.5
1,576,397 + LRK55_RS07275 0.82 +0.1
1,576,398 - LRK55_RS07275 0.82 -0.5
1,576,499 + LRK55_RS07275 0.90 -1.5
1,576,500 - LRK55_RS07275 0.90 +0.3
1,576,509 - -0.2
1,576,732 + LRK55_RS07280 0.19 -1.9
1,576,732 + LRK55_RS07280 0.19 +0.4
1,576,732 + LRK55_RS07280 0.19 +0.0
1,576,764 + LRK55_RS07280 0.24 +0.6
1,576,852 + LRK55_RS07280 0.40 -0.4
1,576,946 - LRK55_RS07280 0.57 -0.9
1,577,005 + LRK55_RS07280 0.67 +0.9
1,577,005 + LRK55_RS07280 0.67 +0.1
1,577,006 - LRK55_RS07280 0.68 +0.1
1,577,006 - LRK55_RS07280 0.68 -0.2

Or see this region's nucleotide sequence