Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06180

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS06175 and LRK55_RS06180 are separated by 274 nucleotidesLRK55_RS06180 and LRK55_RS06185 are separated by 12 nucleotidesLRK55_RS06185 and LRK55_RS06190 are separated by 100 nucleotides LRK55_RS06175: LRK55_RS06175 - Do family serine endopeptidase, at 1,328,888 to 1,330,294 _RS06175 LRK55_RS06180: LRK55_RS06180 - substrate-binding domain-containing protein, at 1,330,569 to 1,331,909 _RS06180 LRK55_RS06185: LRK55_RS06185 - HAD family hydrolase, at 1,331,922 to 1,332,620 _RS06185 LRK55_RS06190: LRK55_RS06190 - leucyl aminopeptidase family protein, at 1,332,721 to 1,334,127 _RS06190 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1329.729 kb on + strand, within LRK55_RS06175at 1329.729 kb on + strand, within LRK55_RS06175at 1329.729 kb on + strand, within LRK55_RS06175at 1329.729 kb on + strand, within LRK55_RS06175at 1329.729 kb on + strand, within LRK55_RS06175at 1329.729 kb on + strand, within LRK55_RS06175at 1329.730 kb on - strand, within LRK55_RS06175at 1329.730 kb on - strand, within LRK55_RS06175at 1329.730 kb on - strand, within LRK55_RS06175at 1330.277 kb on + strandat 1330.277 kb on + strandat 1330.292 kb on + strandat 1330.292 kb on + strandat 1330.292 kb on + strandat 1330.292 kb on + strandat 1330.293 kb on - strandat 1330.293 kb on - strandat 1330.293 kb on - strandat 1330.293 kb on - strandat 1330.293 kb on - strandat 1330.293 kb on - strandat 1330.477 kb on + strandat 1330.477 kb on + strandat 1330.477 kb on + strandat 1330.477 kb on + strandat 1330.477 kb on + strandat 1330.478 kb on - strandat 1330.478 kb on - strandat 1330.478 kb on - strandat 1330.478 kb on - strandat 1330.518 kb on + strandat 1330.518 kb on + strandat 1330.518 kb on + strandat 1330.518 kb on + strandat 1330.519 kb on - strandat 1330.519 kb on - strandat 1330.519 kb on - strandat 1330.519 kb on - strandat 1330.519 kb on - strandat 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.980 kb on + strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.981 kb on - strand, within LRK55_RS06180at 1330.983 kb on + strand, within LRK55_RS06180at 1330.983 kb on + strand, within LRK55_RS06180at 1330.984 kb on - strand, within LRK55_RS06180at 1330.984 kb on - strand, within LRK55_RS06180at 1330.984 kb on - strand, within LRK55_RS06180at 1331.040 kb on + strand, within LRK55_RS06180at 1331.040 kb on + strand, within LRK55_RS06180at 1331.040 kb on + strand, within LRK55_RS06180at 1331.040 kb on + strand, within LRK55_RS06180at 1331.040 kb on + strand, within LRK55_RS06180at 1331.040 kb on + strand, within LRK55_RS06180at 1331.041 kb on - strand, within LRK55_RS06180at 1331.041 kb on - strand, within LRK55_RS06180at 1331.041 kb on - strand, within LRK55_RS06180at 1331.041 kb on - strand, within LRK55_RS06180at 1331.041 kb on - strand, within LRK55_RS06180at 1331.041 kb on - strand, within LRK55_RS06180at 1331.073 kb on + strand, within LRK55_RS06180at 1331.073 kb on + strand, within LRK55_RS06180at 1331.073 kb on + strand, within LRK55_RS06180at 1331.074 kb on - strand, within LRK55_RS06180at 1331.074 kb on - strand, within LRK55_RS06180at 1331.074 kb on - strand, within LRK55_RS06180at 1331.074 kb on - strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.133 kb on + strand, within LRK55_RS06180at 1331.134 kb on - strand, within LRK55_RS06180at 1331.134 kb on - strand, within LRK55_RS06180at 1331.134 kb on - strand, within LRK55_RS06180at 1331.134 kb on - strand, within LRK55_RS06180at 1331.286 kb on + strand, within LRK55_RS06180at 1331.286 kb on + strand, within LRK55_RS06180at 1331.286 kb on + strand, within LRK55_RS06180at 1331.287 kb on - strand, within LRK55_RS06180at 1331.287 kb on - strand, within LRK55_RS06180at 1331.307 kb on + strand, within LRK55_RS06180at 1331.308 kb on - strand, within LRK55_RS06180at 1331.418 kb on + strand, within LRK55_RS06180at 1331.419 kb on - strand, within LRK55_RS06180at 1331.532 kb on + strand, within LRK55_RS06180at 1331.532 kb on + strand, within LRK55_RS06180at 1331.532 kb on + strand, within LRK55_RS06180at 1331.532 kb on + strand, within LRK55_RS06180at 1331.533 kb on - strand, within LRK55_RS06180at 1331.533 kb on - strand, within LRK55_RS06180at 1331.570 kb on + strand, within LRK55_RS06180at 1331.571 kb on - strand, within LRK55_RS06180at 1331.653 kb on + strand, within LRK55_RS06180at 1331.653 kb on + strand, within LRK55_RS06180at 1331.653 kb on + strand, within LRK55_RS06180at 1331.653 kb on + strand, within LRK55_RS06180at 1331.653 kb on + strand, within LRK55_RS06180at 1331.654 kb on - strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.772 kb on + strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.773 kb on - strand, within LRK55_RS06180at 1331.907 kb on + strandat 1331.908 kb on - strandat 1331.908 kb on - strandat 1332.204 kb on + strand, within LRK55_RS06185at 1332.204 kb on + strand, within LRK55_RS06185at 1332.205 kb on - strand, within LRK55_RS06185at 1332.205 kb on - strand, within LRK55_RS06185at 1332.205 kb on - strand, within LRK55_RS06185at 1332.234 kb on + strand, within LRK55_RS06185at 1332.632 kb on + strandat 1332.632 kb on + strandat 1332.632 kb on + strandat 1332.632 kb on + strandat 1332.632 kb on + strandat 1332.632 kb on + strandat 1332.632 kb on + strandat 1332.632 kb on + strandat 1332.633 kb on - strandat 1332.633 kb on - strandat 1332.633 kb on - strandat 1332.633 kb on - strandat 1332.633 kb on - strandat 1332.633 kb on - strandat 1332.633 kb on - strandat 1332.793 kb on + strandat 1332.793 kb on + strandat 1332.794 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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1,329,729 + LRK55_RS06175 0.60 -0.9
1,329,729 + LRK55_RS06175 0.60 -1.2
1,329,729 + LRK55_RS06175 0.60 +0.4
1,329,729 + LRK55_RS06175 0.60 +1.4
1,329,729 + LRK55_RS06175 0.60 -1.9
1,329,729 + LRK55_RS06175 0.60 -0.5
1,329,730 - LRK55_RS06175 0.60 -0.4
1,329,730 - LRK55_RS06175 0.60 -2.3
1,329,730 - LRK55_RS06175 0.60 -0.3
1,330,277 + -1.3
1,330,277 + -0.3
1,330,292 + +1.2
1,330,292 + +0.4
1,330,292 + +1.0
1,330,292 + +0.9
1,330,293 - +1.0
1,330,293 - +1.0
1,330,293 - +1.0
1,330,293 - +0.0
1,330,293 - +0.4
1,330,293 - +1.4
1,330,477 + -0.5
1,330,477 + +0.7
1,330,477 + -0.0
1,330,477 + +2.5
1,330,477 + -0.7
1,330,478 - -0.1
1,330,478 - +0.2
1,330,478 - -0.6
1,330,478 - +1.2
1,330,518 + -0.2
1,330,518 + +0.6
1,330,518 + -0.8
1,330,518 + +0.2
1,330,519 - +0.9
1,330,519 - -1.0
1,330,519 - +0.5
1,330,519 - -0.2
1,330,519 - -0.9
1,330,980 + LRK55_RS06180 0.31 -0.0
1,330,980 + LRK55_RS06180 0.31 +0.3
1,330,980 + LRK55_RS06180 0.31 +0.8
1,330,980 + LRK55_RS06180 0.31 -0.9
1,330,980 + LRK55_RS06180 0.31 -0.1
1,330,980 + LRK55_RS06180 0.31 +0.5
1,330,980 + LRK55_RS06180 0.31 +0.3
1,330,980 + LRK55_RS06180 0.31 +1.7
1,330,980 + LRK55_RS06180 0.31 +1.7
1,330,980 + LRK55_RS06180 0.31 -0.7
1,330,980 + LRK55_RS06180 0.31 -0.1
1,330,980 + LRK55_RS06180 0.31 +0.3
1,330,980 + LRK55_RS06180 0.31 -1.9
1,330,980 + LRK55_RS06180 0.31 -0.3
1,330,980 + LRK55_RS06180 0.31 +1.4
1,330,980 + LRK55_RS06180 0.31 -1.1
1,330,980 + LRK55_RS06180 0.31 -1.3
1,330,980 + LRK55_RS06180 0.31 -0.8
1,330,980 + LRK55_RS06180 0.31 +1.3
1,330,980 + LRK55_RS06180 0.31 +1.9
1,330,980 + LRK55_RS06180 0.31 -0.7
1,330,980 + LRK55_RS06180 0.31 -1.5
1,330,980 + LRK55_RS06180 0.31 -1.1
1,330,980 + LRK55_RS06180 0.31 -0.1
1,330,980 + LRK55_RS06180 0.31 +0.6
1,330,980 + LRK55_RS06180 0.31 +0.7
1,330,981 - LRK55_RS06180 0.31 -0.8
1,330,981 - LRK55_RS06180 0.31 +0.3
1,330,981 - LRK55_RS06180 0.31 -1.6
1,330,981 - LRK55_RS06180 0.31 -0.7
1,330,981 - LRK55_RS06180 0.31 -0.3
1,330,981 - LRK55_RS06180 0.31 +2.3
1,330,981 - LRK55_RS06180 0.31 -1.8
1,330,981 - LRK55_RS06180 0.31 -2.8
1,330,981 - LRK55_RS06180 0.31 +1.8
1,330,981 - LRK55_RS06180 0.31 -0.9
1,330,981 - LRK55_RS06180 0.31 -1.0
1,330,981 - LRK55_RS06180 0.31 +1.9
1,330,981 - LRK55_RS06180 0.31 +0.1
1,330,981 - LRK55_RS06180 0.31 -0.6
1,330,981 - LRK55_RS06180 0.31 -1.3
1,330,981 - LRK55_RS06180 0.31 +0.1
1,330,981 - LRK55_RS06180 0.31 -0.7
1,330,981 - LRK55_RS06180 0.31 -0.7
1,330,981 - LRK55_RS06180 0.31 -1.0
1,330,983 + LRK55_RS06180 0.31 -0.6
1,330,983 + LRK55_RS06180 0.31 -0.6
1,330,984 - LRK55_RS06180 0.31 -0.7
1,330,984 - LRK55_RS06180 0.31 -2.5
1,330,984 - LRK55_RS06180 0.31 -0.7
1,331,040 + LRK55_RS06180 0.35 -1.6
1,331,040 + LRK55_RS06180 0.35 -1.2
1,331,040 + LRK55_RS06180 0.35 +0.1
1,331,040 + LRK55_RS06180 0.35 -0.4
1,331,040 + LRK55_RS06180 0.35 +1.4
1,331,040 + LRK55_RS06180 0.35 +2.9
1,331,041 - LRK55_RS06180 0.35 -1.5
1,331,041 - LRK55_RS06180 0.35 -1.0
1,331,041 - LRK55_RS06180 0.35 -1.5
1,331,041 - LRK55_RS06180 0.35 +0.6
1,331,041 - LRK55_RS06180 0.35 -1.4
1,331,041 - LRK55_RS06180 0.35 -0.7
1,331,073 + LRK55_RS06180 0.38 -0.7
1,331,073 + LRK55_RS06180 0.38 -0.6
1,331,073 + LRK55_RS06180 0.38 +1.3
1,331,074 - LRK55_RS06180 0.38 -0.0
1,331,074 - LRK55_RS06180 0.38 -0.9
1,331,074 - LRK55_RS06180 0.38 +0.0
1,331,074 - LRK55_RS06180 0.38 +1.3
1,331,133 + LRK55_RS06180 0.42 +0.6
1,331,133 + LRK55_RS06180 0.42 -2.2
1,331,133 + LRK55_RS06180 0.42 +0.0
1,331,133 + LRK55_RS06180 0.42 -0.9
1,331,133 + LRK55_RS06180 0.42 -0.5
1,331,133 + LRK55_RS06180 0.42 -0.0
1,331,133 + LRK55_RS06180 0.42 -1.9
1,331,133 + LRK55_RS06180 0.42 -0.7
1,331,133 + LRK55_RS06180 0.42 +0.0
1,331,133 + LRK55_RS06180 0.42 -0.4
1,331,133 + LRK55_RS06180 0.42 -0.3
1,331,133 + LRK55_RS06180 0.42 -1.6
1,331,134 - LRK55_RS06180 0.42 +0.7
1,331,134 - LRK55_RS06180 0.42 -1.7
1,331,134 - LRK55_RS06180 0.42 -1.5
1,331,134 - LRK55_RS06180 0.42 -2.2
1,331,286 + LRK55_RS06180 0.53 -1.2
1,331,286 + LRK55_RS06180 0.53 +1.1
1,331,286 + LRK55_RS06180 0.53 -0.0
1,331,287 - LRK55_RS06180 0.54 -0.9
1,331,287 - LRK55_RS06180 0.54 -1.3
1,331,307 + LRK55_RS06180 0.55 -1.9
1,331,308 - LRK55_RS06180 0.55 -0.9
1,331,418 + LRK55_RS06180 0.63 +0.2
1,331,419 - LRK55_RS06180 0.63 +1.0
1,331,532 + LRK55_RS06180 0.72 -1.7
1,331,532 + LRK55_RS06180 0.72 -0.0
1,331,532 + LRK55_RS06180 0.72 -1.7
1,331,532 + LRK55_RS06180 0.72 +0.3
1,331,533 - LRK55_RS06180 0.72 -0.0
1,331,533 - LRK55_RS06180 0.72 -0.3
1,331,570 + LRK55_RS06180 0.75 +0.0
1,331,571 - LRK55_RS06180 0.75 +0.1
1,331,653 + LRK55_RS06180 0.81 -1.8
1,331,653 + LRK55_RS06180 0.81 -1.0
1,331,653 + LRK55_RS06180 0.81 +0.9
1,331,653 + LRK55_RS06180 0.81 -1.6
1,331,653 + LRK55_RS06180 0.81 +0.1
1,331,654 - LRK55_RS06180 0.81 -0.9
1,331,772 + LRK55_RS06180 0.90 +0.3
1,331,772 + LRK55_RS06180 0.90 -0.6
1,331,772 + LRK55_RS06180 0.90 -1.3
1,331,772 + LRK55_RS06180 0.90 -0.3
1,331,772 + LRK55_RS06180 0.90 +1.2
1,331,772 + LRK55_RS06180 0.90 -3.0
1,331,772 + LRK55_RS06180 0.90 -0.2
1,331,772 + LRK55_RS06180 0.90 +0.3
1,331,772 + LRK55_RS06180 0.90 +0.7
1,331,772 + LRK55_RS06180 0.90 -0.1
1,331,772 + LRK55_RS06180 0.90 -0.8
1,331,772 + LRK55_RS06180 0.90 -1.7
1,331,773 - LRK55_RS06180 0.90 -0.5
1,331,773 - LRK55_RS06180 0.90 -0.4
1,331,773 - LRK55_RS06180 0.90 -2.2
1,331,773 - LRK55_RS06180 0.90 +1.1
1,331,773 - LRK55_RS06180 0.90 +0.1
1,331,773 - LRK55_RS06180 0.90 +0.3
1,331,773 - LRK55_RS06180 0.90 +1.3
1,331,773 - LRK55_RS06180 0.90 -1.8
1,331,773 - LRK55_RS06180 0.90 +1.1
1,331,773 - LRK55_RS06180 0.90 -0.7
1,331,907 + -0.7
1,331,908 - -0.7
1,331,908 - -0.7
1,332,204 + LRK55_RS06185 0.40 -0.2
1,332,204 + LRK55_RS06185 0.40 +0.8
1,332,205 - LRK55_RS06185 0.40 -1.6
1,332,205 - LRK55_RS06185 0.40 +0.5
1,332,205 - LRK55_RS06185 0.40 -0.9
1,332,234 + LRK55_RS06185 0.45 -0.9
1,332,632 + +1.7
1,332,632 + -2.2
1,332,632 + -1.5
1,332,632 + -0.4
1,332,632 + -1.1
1,332,632 + +0.4
1,332,632 + -1.5
1,332,632 + +0.4
1,332,633 - +0.2
1,332,633 - -0.1
1,332,633 - -0.6
1,332,633 - -1.0
1,332,633 - -1.0
1,332,633 - -0.0
1,332,633 - +1.3
1,332,793 + -0.4
1,332,793 + -1.2
1,332,794 - +0.4

Or see this region's nucleotide sequence