Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS05425

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Aluminum chloride 0.140625 mM
1,177,463	+		LRK55_RS05420	0.12	-3.4
1,177,463	+		LRK55_RS05420	0.12	-2.1
1,177,463	+		LRK55_RS05420	0.12	-1.3
1,177,463	+		LRK55_RS05420	0.12	-1.3
1,177,464	-		LRK55_RS05420	0.12	-1.7
1,177,464	-		LRK55_RS05420	0.12	-1.1
1,177,464	-		LRK55_RS05420	0.12	-2.1
1,177,464	-		LRK55_RS05420	0.12	-0.3
1,177,464	-		LRK55_RS05420	0.12	-2.4
1,177,464	-		LRK55_RS05420	0.12	-3.4
1,177,749	+		LRK55_RS05420	0.38	-1.1
1,177,749	+		LRK55_RS05420	0.38	-2.9
1,177,749	+		LRK55_RS05420	0.38	-1.3
1,177,749	+		LRK55_RS05420	0.38	-2.1
1,177,750	-		LRK55_RS05420	0.39	-1.7
1,177,750	-		LRK55_RS05420	0.39	-1.1
1,177,750	-		LRK55_RS05420	0.39	-1.3
1,177,750	-		LRK55_RS05420	0.39	-1.2
1,177,750	-		LRK55_RS05420	0.39	-1.7
1,177,750	-		LRK55_RS05420	0.39	-3.0
1,177,766	+		LRK55_RS05420	0.40	-1.9
1,177,766	+		LRK55_RS05420	0.40	-0.7
1,177,766	+		LRK55_RS05420	0.40	-3.2
1,177,766	+		LRK55_RS05420	0.40	-2.8
1,177,767	-		LRK55_RS05420	0.40	-1.7
1,177,767	-		LRK55_RS05420	0.40	-1.3
1,177,811	+		LRK55_RS05420	0.44	-1.7
1,177,811	+		LRK55_RS05420	0.44	-3.3
1,177,811	+		LRK55_RS05420	0.44	-3.4
1,177,812	-		LRK55_RS05420	0.44	-0.7
1,177,829	+		LRK55_RS05420	0.46	-1.6
1,177,829	+		LRK55_RS05420	0.46	-2.3
1,177,863	+		LRK55_RS05420	0.49	-1.3
1,177,863	+		LRK55_RS05420	0.49	+0.3
1,177,863	+		LRK55_RS05420	0.49	-0.7
1,177,863	+		LRK55_RS05420	0.49	-0.2
1,177,863	+		LRK55_RS05420	0.49	-3.4
1,177,863	+		LRK55_RS05420	0.49	-2.2
1,177,863	+		LRK55_RS05420	0.49	-3.0
1,177,863	+		LRK55_RS05420	0.49	-3.4
1,177,863	+		LRK55_RS05420	0.49	-3.4
1,177,863	+		LRK55_RS05420	0.49	-1.3
1,177,863	+		LRK55_RS05420	0.49	-1.3
1,177,863	+		LRK55_RS05420	0.49	-1.1
1,177,863	+		LRK55_RS05420	0.49	+0.3
1,177,864	-		LRK55_RS05420	0.49	-2.4
1,177,864	-		LRK55_RS05420	0.49	-3.3
1,177,864	-		LRK55_RS05420	0.49	-2.6
1,177,864	-		LRK55_RS05420	0.49	+1.3
1,177,883	+		LRK55_RS05420	0.51	-1.2
1,177,883	+		LRK55_RS05420	0.51	-3.3
1,177,883	+		LRK55_RS05420	0.51	-1.9
1,177,883	+		LRK55_RS05420	0.51	-2.8
1,177,883	+		LRK55_RS05420	0.51	-1.3
1,177,883	+		LRK55_RS05420	0.51	-0.7
1,177,883	+		LRK55_RS05420	0.51	-2.6
1,177,883	+		LRK55_RS05420	0.51	-2.6
1,177,883	+		LRK55_RS05420	0.51	-2.2
1,177,883	+		LRK55_RS05420	0.51	-2.3
1,177,883	+		LRK55_RS05420	0.51	-3.1
1,177,883	+		LRK55_RS05420	0.51	-2.6
1,177,883	+		LRK55_RS05420	0.51	-2.6
1,177,884	-		LRK55_RS05420	0.51	-1.3
1,177,884	-		LRK55_RS05420	0.51	-2.1
1,177,884	-		LRK55_RS05420	0.51	-2.6
1,177,884	-		LRK55_RS05420	0.51	-1.9
1,177,884	-		LRK55_RS05420	0.51	-1.3
1,177,884	-		LRK55_RS05420	0.51	-2.7
1,177,884	-		LRK55_RS05420	0.51	-0.3
1,177,922	+		LRK55_RS05420	0.55	-2.2
1,177,922	+		LRK55_RS05420	0.55	-0.7
1,177,922	+		LRK55_RS05420	0.55	-2.2
1,177,922	+		LRK55_RS05420	0.55	-3.1
1,177,923	-		LRK55_RS05420	0.55	-1.9
1,177,923	-		LRK55_RS05420	0.55	-2.4
1,177,998	+		LRK55_RS05420	0.62	-2.1
1,177,998	+		LRK55_RS05420	0.62	-3.3
1,177,998	+		LRK55_RS05420	0.62	-2.4
1,177,999	-		LRK55_RS05420	0.62	-2.1
1,178,000	+		LRK55_RS05420	0.62	-2.3
1,178,000	+		LRK55_RS05420	0.62	-3.4
1,178,000	+		LRK55_RS05420	0.62	-0.7
1,178,000	+		LRK55_RS05420	0.62	-2.2
1,178,000	+		LRK55_RS05420	0.62	-2.2
1,178,001	-		LRK55_RS05420	0.62	-0.7
1,178,001	-		LRK55_RS05420	0.62	-2.7
1,178,096	+		LRK55_RS05420	0.71	-1.9
1,178,096	+		LRK55_RS05420	0.71	-3.0
1,178,096	+		LRK55_RS05420	0.71	-1.7
1,178,096	+		LRK55_RS05420	0.71	-0.7
1,178,096	+		LRK55_RS05420	0.71	-2.1
1,178,096	+		LRK55_RS05420	0.71	-3.4
1,178,097	-		LRK55_RS05420	0.71	-3.3
1,178,097	-		LRK55_RS05420	0.71	-3.0
1,178,097	-		LRK55_RS05420	0.71	-1.1
1,178,097	-		LRK55_RS05420	0.71	-0.3
1,178,213	+		LRK55_RS05420	0.82	-2.7
1,178,213	+		LRK55_RS05420	0.82	-0.3
1,178,213	+		LRK55_RS05420	0.82	-1.9
1,178,214	-		LRK55_RS05420	0.82	-2.3
1,178,214	-		LRK55_RS05420	0.82	-1.1
1,178,214	-		LRK55_RS05420	0.82	-4.1
1,178,214	-		LRK55_RS05420	0.82	-1.7
1,178,214	-		LRK55_RS05420	0.82	-0.3
1,178,214	-		LRK55_RS05420	0.82	-2.1
1,178,214	-		LRK55_RS05420	0.82	-0.7
1,178,336	+				-1.7
1,178,336	+				-2.9
1,178,337	-				-1.3
1,178,381	+				-0.8
1,178,382	-				-1.1
1,178,382	-				+1.3
1,178,382	-				+0.8
1,178,412	+				-0.2
1,178,412	+				-3.7
1,178,412	+				-1.7
1,178,412	+				-2.0
1,178,412	+				-1.1
1,178,412	+				-2.1
1,178,412	+				-4.0
1,178,412	+				-2.7
1,178,413	-				-2.2
1,178,413	-				-1.2
1,178,413	-				-1.9
1,178,413	-				-2.7
1,178,501	-		LRK55_RS05425	0.11	-4.1
1,178,501	-		LRK55_RS05425	0.11	-0.7
1,178,501	-		LRK55_RS05425	0.11	-3.9
1,178,518	+		LRK55_RS05425	0.13	-3.7
1,178,518	+		LRK55_RS05425	0.13	-3.3
1,178,518	+		LRK55_RS05425	0.13	-2.2
1,178,518	+		LRK55_RS05425	0.13	-0.3
1,178,518	+		LRK55_RS05425	0.13	-1.8
1,178,518	+		LRK55_RS05425	0.13	-3.1
1,178,518	+		LRK55_RS05425	0.13	-3.1
1,178,518	+		LRK55_RS05425	0.13	-2.1
1,178,518	+		LRK55_RS05425	0.13	+0.0
1,178,518	+		LRK55_RS05425	0.13	-1.1
1,178,518	+		LRK55_RS05425	0.13	-0.3
1,178,519	-		LRK55_RS05425	0.13	-2.8
1,178,519	-		LRK55_RS05425	0.13	-2.7
1,178,519	-		LRK55_RS05425	0.13	-3.4
1,178,521	+		LRK55_RS05425	0.13	-2.1
1,178,521	+		LRK55_RS05425	0.13	-0.7
1,178,522	-		LRK55_RS05425	0.13	+0.3
1,178,644	+		LRK55_RS05425	0.27	-2.1
1,178,749	+		LRK55_RS05425	0.39	-0.6
1,178,750	-		LRK55_RS05425	0.39	-3.1
1,178,750	-		LRK55_RS05425	0.39	-1.7
1,178,825	+		LRK55_RS05425	0.47	-0.7
1,178,917	+		LRK55_RS05425	0.58	-1.3
1,178,917	+		LRK55_RS05425	0.58	-1.9
1,178,935	+		LRK55_RS05425	0.60	+1.3
1,178,935	+		LRK55_RS05425	0.60	-3.0
1,178,935	+		LRK55_RS05425	0.60	-3.2
1,178,936	-		LRK55_RS05425	0.60	-0.3
1,178,936	-		LRK55_RS05425	0.60	-1.3
1,178,936	-		LRK55_RS05425	0.60	-1.7
1,178,936	-		LRK55_RS05425	0.60	-1.1
1,178,936	-		LRK55_RS05425	0.60	-1.9
1,178,941	+		LRK55_RS05425	0.60	+0.5
1,178,941	+		LRK55_RS05425	0.60	-2.3
1,178,941	+		LRK55_RS05425	0.60	-2.9
1,178,941	+		LRK55_RS05425	0.60	-2.8
1,178,941	+		LRK55_RS05425	0.60	-2.0
1,178,941	+		LRK55_RS05425	0.60	-2.6
1,178,941	+		LRK55_RS05425	0.60	-2.6
1,178,942	-		LRK55_RS05425	0.60	-1.7
1,178,942	-		LRK55_RS05425	0.60	-2.2
1,178,962	+		LRK55_RS05425	0.63	-1.6
1,179,025	+		LRK55_RS05425	0.70	-0.7
1,179,025	+		LRK55_RS05425	0.70	-1.3
1,179,121	+		LRK55_RS05425	0.80	-1.1
1,179,121	+		LRK55_RS05425	0.80	+0.3
1,179,121	+		LRK55_RS05425	0.80	-2.6
1,179,121	+		LRK55_RS05425	0.80	-3.1
1,179,122	-		LRK55_RS05425	0.81	-2.1
1,179,122	-		LRK55_RS05425	0.81	-2.9
1,179,122	-		LRK55_RS05425	0.81	-0.7
1,179,122	-		LRK55_RS05425	0.81	-2.1
1,179,122	-		LRK55_RS05425	0.81	-3.4
1,179,181	+		LRK55_RS05425	0.87	-0.3
1,179,182	-		LRK55_RS05425	0.87	-1.6
1,179,182	-		LRK55_RS05425	0.87	-3.6
1,179,256	+				-3.4
1,179,256	+				-0.6
1,179,257	-				-1.2
1,179,257	-				-1.3
1,179,257	-				-1.3
1,179,257	-				-2.7
1,179,257	-				+0.3
1,179,837	+				-0.2
1,179,837	+				-0.0
1,179,837	+				+0.7
1,179,837	+				-1.2
1,179,837	+				+2.1
1,179,837	+				-0.1
1,179,838	-				+0.1
1,179,838	-				-0.8
1,179,838	-				-0.2
1,179,838	-				-0.7
1,179,838	-				-0.7
1,179,838	-				+0.2
1,179,838	-				-0.7