Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS04375

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS04370 and LRK55_RS04375 are separated by 423 nucleotidesLRK55_RS04375 and LRK55_RS04380 are separated by 90 nucleotides LRK55_RS04370: LRK55_RS04370 - riboflavin synthase, at 933,541 to 934,182 _RS04370 LRK55_RS04375: LRK55_RS04375 - LysR family transcriptional regulator, at 934,606 to 935,517 _RS04375 LRK55_RS04380: LRK55_RS04380 - NAD(P)-dependent alcohol dehydrogenase, at 935,608 to 936,618 _RS04380 Position (kb) 934 935 936Strain fitness (log2 ratio) -2 -1 0 1 2at 933.789 kb on - strand, within LRK55_RS04370at 934.530 kb on + strandat 934.530 kb on + strandat 934.530 kb on + strandat 934.531 kb on - strandat 934.531 kb on - strandat 934.531 kb on - strandat 934.531 kb on - strandat 934.531 kb on - strandat 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.769 kb on + strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.770 kb on - strand, within LRK55_RS04375at 934.773 kb on + strand, within LRK55_RS04375at 934.773 kb on + strand, within LRK55_RS04375at 934.774 kb on - strand, within LRK55_RS04375at 934.774 kb on - strand, within LRK55_RS04375at 934.774 kb on - strand, within LRK55_RS04375at 934.858 kb on + strand, within LRK55_RS04375at 934.982 kb on + strand, within LRK55_RS04375at 935.003 kb on + strand, within LRK55_RS04375at 935.003 kb on + strand, within LRK55_RS04375at 935.004 kb on - strand, within LRK55_RS04375at 935.004 kb on - strand, within LRK55_RS04375at 935.004 kb on - strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.102 kb on + strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.103 kb on - strand, within LRK55_RS04375at 935.106 kb on + strand, within LRK55_RS04375at 935.106 kb on + strand, within LRK55_RS04375at 935.106 kb on + strand, within LRK55_RS04375at 935.106 kb on + strand, within LRK55_RS04375at 935.106 kb on + strand, within LRK55_RS04375at 935.106 kb on + strand, within LRK55_RS04375at 935.106 kb on + strand, within LRK55_RS04375at 935.107 kb on - strand, within LRK55_RS04375at 935.107 kb on - strand, within LRK55_RS04375at 935.107 kb on - strand, within LRK55_RS04375at 935.107 kb on - strand, within LRK55_RS04375at 935.114 kb on + strand, within LRK55_RS04375at 935.114 kb on + strand, within LRK55_RS04375at 935.114 kb on + strand, within LRK55_RS04375at 935.114 kb on + strand, within LRK55_RS04375at 935.115 kb on - strand, within LRK55_RS04375at 935.115 kb on - strand, within LRK55_RS04375at 935.115 kb on - strand, within LRK55_RS04375at 935.115 kb on - strand, within LRK55_RS04375at 935.117 kb on - strand, within LRK55_RS04375at 935.398 kb on + strand, within LRK55_RS04375at 935.399 kb on - strand, within LRK55_RS04375at 935.551 kb on + strandat 935.551 kb on + strandat 935.552 kb on - strandat 935.758 kb on + strand, within LRK55_RS04380at 935.759 kb on - strand, within LRK55_RS04380at 935.759 kb on - strand, within LRK55_RS04380at 935.869 kb on + strand, within LRK55_RS04380at 935.869 kb on + strand, within LRK55_RS04380at 935.869 kb on + strand, within LRK55_RS04380at 935.869 kb on + strand, within LRK55_RS04380at 935.869 kb on + strand, within LRK55_RS04380at 935.870 kb on - strand, within LRK55_RS04380at 935.870 kb on - strand, within LRK55_RS04380at 935.870 kb on - strand, within LRK55_RS04380at 935.870 kb on - strand, within LRK55_RS04380at 935.974 kb on + strand, within LRK55_RS04380at 935.975 kb on - strand, within LRK55_RS04380at 935.975 kb on - strand, within LRK55_RS04380at 936.232 kb on + strand, within LRK55_RS04380at 936.233 kb on - strand, within LRK55_RS04380at 936.233 kb on - strand, within LRK55_RS04380at 936.233 kb on - strand, within LRK55_RS04380at 936.233 kb on - strand, within LRK55_RS04380at 936.233 kb on - strand, within LRK55_RS04380at 936.263 kb on + strand, within LRK55_RS04380

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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933,789 - LRK55_RS04370 0.39 -1.3
934,530 + +0.8
934,530 + -1.5
934,530 + -1.1
934,531 - +0.8
934,531 - +0.5
934,531 - -0.9
934,531 - +0.2
934,531 - -1.1
934,769 + LRK55_RS04375 0.18 +1.3
934,769 + LRK55_RS04375 0.18 -0.2
934,769 + LRK55_RS04375 0.18 -0.5
934,769 + LRK55_RS04375 0.18 +0.7
934,769 + LRK55_RS04375 0.18 -2.4
934,769 + LRK55_RS04375 0.18 +0.4
934,769 + LRK55_RS04375 0.18 -1.0
934,769 + LRK55_RS04375 0.18 +0.6
934,769 + LRK55_RS04375 0.18 -0.1
934,769 + LRK55_RS04375 0.18 +0.6
934,769 + LRK55_RS04375 0.18 -1.7
934,769 + LRK55_RS04375 0.18 -1.8
934,769 + LRK55_RS04375 0.18 -0.5
934,769 + LRK55_RS04375 0.18 +0.9
934,770 - LRK55_RS04375 0.18 +0.3
934,770 - LRK55_RS04375 0.18 +0.9
934,770 - LRK55_RS04375 0.18 -1.1
934,770 - LRK55_RS04375 0.18 +1.5
934,770 - LRK55_RS04375 0.18 +0.8
934,770 - LRK55_RS04375 0.18 -0.6
934,770 - LRK55_RS04375 0.18 -0.1
934,770 - LRK55_RS04375 0.18 +0.7
934,770 - LRK55_RS04375 0.18 -0.3
934,770 - LRK55_RS04375 0.18 +0.6
934,770 - LRK55_RS04375 0.18 +0.7
934,770 - LRK55_RS04375 0.18 +0.5
934,770 - LRK55_RS04375 0.18 +0.3
934,770 - LRK55_RS04375 0.18 -0.4
934,770 - LRK55_RS04375 0.18 -0.4
934,770 - LRK55_RS04375 0.18 -0.1
934,770 - LRK55_RS04375 0.18 -2.3
934,770 - LRK55_RS04375 0.18 -0.6
934,770 - LRK55_RS04375 0.18 +0.3
934,770 - LRK55_RS04375 0.18 +0.2
934,770 - LRK55_RS04375 0.18 -0.1
934,770 - LRK55_RS04375 0.18 -1.9
934,770 - LRK55_RS04375 0.18 -0.7
934,773 + LRK55_RS04375 0.18 +0.3
934,773 + LRK55_RS04375 0.18 -0.4
934,774 - LRK55_RS04375 0.18 -0.3
934,774 - LRK55_RS04375 0.18 +0.6
934,774 - LRK55_RS04375 0.18 +0.2
934,858 + LRK55_RS04375 0.28 +2.3
934,982 + LRK55_RS04375 0.41 -0.4
935,003 + LRK55_RS04375 0.44 +0.2
935,003 + LRK55_RS04375 0.44 +1.4
935,004 - LRK55_RS04375 0.44 +0.4
935,004 - LRK55_RS04375 0.44 -0.7
935,004 - LRK55_RS04375 0.44 +0.3
935,102 + LRK55_RS04375 0.54 +0.0
935,102 + LRK55_RS04375 0.54 -1.6
935,102 + LRK55_RS04375 0.54 +0.4
935,102 + LRK55_RS04375 0.54 -2.5
935,102 + LRK55_RS04375 0.54 +0.8
935,102 + LRK55_RS04375 0.54 -2.2
935,102 + LRK55_RS04375 0.54 +1.8
935,102 + LRK55_RS04375 0.54 +1.7
935,102 + LRK55_RS04375 0.54 -1.3
935,103 - LRK55_RS04375 0.54 +0.3
935,103 - LRK55_RS04375 0.54 +0.1
935,103 - LRK55_RS04375 0.54 +1.7
935,103 - LRK55_RS04375 0.54 +0.8
935,103 - LRK55_RS04375 0.54 +0.9
935,103 - LRK55_RS04375 0.54 +1.8
935,103 - LRK55_RS04375 0.54 -0.5
935,103 - LRK55_RS04375 0.54 -1.2
935,103 - LRK55_RS04375 0.54 +0.4
935,103 - LRK55_RS04375 0.54 -0.0
935,103 - LRK55_RS04375 0.54 +1.5
935,103 - LRK55_RS04375 0.54 +0.5
935,103 - LRK55_RS04375 0.54 +0.1
935,103 - LRK55_RS04375 0.54 -0.2
935,103 - LRK55_RS04375 0.54 -1.7
935,103 - LRK55_RS04375 0.54 -2.1
935,106 + LRK55_RS04375 0.55 -0.7
935,106 + LRK55_RS04375 0.55 -0.1
935,106 + LRK55_RS04375 0.55 -1.8
935,106 + LRK55_RS04375 0.55 +0.5
935,106 + LRK55_RS04375 0.55 +0.4
935,106 + LRK55_RS04375 0.55 +0.6
935,106 + LRK55_RS04375 0.55 -0.4
935,107 - LRK55_RS04375 0.55 +0.8
935,107 - LRK55_RS04375 0.55 -0.3
935,107 - LRK55_RS04375 0.55 +0.0
935,107 - LRK55_RS04375 0.55 -0.5
935,114 + LRK55_RS04375 0.56 +0.3
935,114 + LRK55_RS04375 0.56 -0.5
935,114 + LRK55_RS04375 0.56 -2.4
935,114 + LRK55_RS04375 0.56 -0.7
935,115 - LRK55_RS04375 0.56 +0.2
935,115 - LRK55_RS04375 0.56 +0.5
935,115 - LRK55_RS04375 0.56 -2.1
935,115 - LRK55_RS04375 0.56 +0.7
935,117 - LRK55_RS04375 0.56 -0.4
935,398 + LRK55_RS04375 0.87 -0.2
935,399 - LRK55_RS04375 0.87 +0.8
935,551 + -0.5
935,551 + -0.4
935,552 - -1.1
935,758 + LRK55_RS04380 0.15 -0.1
935,759 - LRK55_RS04380 0.15 +0.5
935,759 - LRK55_RS04380 0.15 -0.7
935,869 + LRK55_RS04380 0.26 -1.9
935,869 + LRK55_RS04380 0.26 +0.2
935,869 + LRK55_RS04380 0.26 +1.3
935,869 + LRK55_RS04380 0.26 -0.9
935,869 + LRK55_RS04380 0.26 +0.5
935,870 - LRK55_RS04380 0.26 -1.5
935,870 - LRK55_RS04380 0.26 +0.2
935,870 - LRK55_RS04380 0.26 -1.3
935,870 - LRK55_RS04380 0.26 +1.2
935,974 + LRK55_RS04380 0.36 +0.7
935,975 - LRK55_RS04380 0.36 +2.3
935,975 - LRK55_RS04380 0.36 -0.8
936,232 + LRK55_RS04380 0.62 +0.7
936,233 - LRK55_RS04380 0.62 -0.3
936,233 - LRK55_RS04380 0.62 -1.1
936,233 - LRK55_RS04380 0.62 -0.3
936,233 - LRK55_RS04380 0.62 -0.2
936,233 - LRK55_RS04380 0.62 -0.4
936,263 + LRK55_RS04380 0.65 +0.3

Or see this region's nucleotide sequence