Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS04160 and LRK55_RS04165 are separated by 31 nucleotides LRK55_RS04165 and LRK55_RS04170 are separated by 79 nucleotides
LRK55_RS04160: LRK55_RS04160 - ATP-binding protein, at 880,596 to 881,981
_RS04160
LRK55_RS04165: LRK55_RS04165 - hypothetical protein, at 882,013 to 882,339
_RS04165
LRK55_RS04170: LRK55_RS04170 - sigma-54 dependent transcriptional regulator, at 882,419 to 883,768
_RS04170
Position (kb) 882
883 Strain fitness (log2 ratio) -2
-1
0
1
2 at 881.489 kb on - strand, within LRK55_RS04160 at 881.600 kb on + strand, within LRK55_RS04160 at 881.600 kb on + strand, within LRK55_RS04160 at 881.600 kb on + strand, within LRK55_RS04160 at 881.600 kb on + strand, within LRK55_RS04160 at 881.601 kb on - strand, within LRK55_RS04160 at 881.601 kb on - strand, within LRK55_RS04160 at 881.601 kb on - strand, within LRK55_RS04160 at 881.601 kb on - strand, within LRK55_RS04160 at 881.806 kb on + strand, within LRK55_RS04160 at 881.806 kb on + strand, within LRK55_RS04160 at 881.806 kb on + strand, within LRK55_RS04160 at 881.807 kb on - strand, within LRK55_RS04160 at 881.902 kb on + strand at 881.903 kb on - strand at 881.903 kb on - strand at 882.377 kb on - strand at 882.459 kb on + strand at 882.459 kb on + strand at 882.460 kb on - strand at 882.696 kb on + strand, within LRK55_RS04170 at 882.828 kb on + strand, within LRK55_RS04170 at 882.829 kb on - strand, within LRK55_RS04170 at 882.831 kb on + strand, within LRK55_RS04170 at 882.831 kb on + strand, within LRK55_RS04170 at 882.831 kb on + strand, within LRK55_RS04170 at 882.831 kb on + strand, within LRK55_RS04170 at 882.831 kb on + strand, within LRK55_RS04170 at 882.831 kb on + strand, within LRK55_RS04170 at 882.832 kb on - strand, within LRK55_RS04170 at 882.832 kb on - strand, within LRK55_RS04170 at 882.832 kb on - strand, within LRK55_RS04170 at 882.832 kb on - strand, within LRK55_RS04170 at 882.832 kb on - strand, within LRK55_RS04170 at 882.832 kb on - strand, within LRK55_RS04170 at 882.896 kb on + strand, within LRK55_RS04170 at 882.897 kb on - strand, within LRK55_RS04170 at 883.074 kb on + strand, within LRK55_RS04170 at 883.074 kb on + strand, within LRK55_RS04170 at 883.075 kb on - strand, within LRK55_RS04170 at 883.075 kb on - strand, within LRK55_RS04170 at 883.320 kb on + strand, within LRK55_RS04170 at 883.320 kb on + strand, within LRK55_RS04170 at 883.320 kb on + strand, within LRK55_RS04170 at 883.321 kb on - strand, within LRK55_RS04170 at 883.321 kb on - strand, within LRK55_RS04170 at 883.321 kb on - strand, within LRK55_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM remove 881,489 - LRK55_RS04160 0.64 +0.5 881,600 + LRK55_RS04160 0.72 -0.5 881,600 + LRK55_RS04160 0.72 +0.8 881,600 + LRK55_RS04160 0.72 -0.5 881,600 + LRK55_RS04160 0.72 +0.3 881,601 - LRK55_RS04160 0.73 -0.2 881,601 - LRK55_RS04160 0.73 +1.0 881,601 - LRK55_RS04160 0.73 -0.5 881,601 - LRK55_RS04160 0.73 +0.7 881,806 + LRK55_RS04160 0.87 +0.1 881,806 + LRK55_RS04160 0.87 +0.6 881,806 + LRK55_RS04160 0.87 -2.1 881,807 - LRK55_RS04160 0.87 -0.7 881,902 + +0.8 881,903 - +1.5 881,903 - +1.9 882,377 - -0.2 882,459 + +0.9 882,459 + -0.1 882,460 - +0.5 882,696 + LRK55_RS04170 0.21 +1.1 882,828 + LRK55_RS04170 0.30 -1.0 882,829 - LRK55_RS04170 0.30 +0.4 882,831 + LRK55_RS04170 0.31 -1.9 882,831 + LRK55_RS04170 0.31 +0.6 882,831 + LRK55_RS04170 0.31 +0.3 882,831 + LRK55_RS04170 0.31 -0.1 882,831 + LRK55_RS04170 0.31 +0.5 882,831 + LRK55_RS04170 0.31 +1.3 882,832 - LRK55_RS04170 0.31 +0.7 882,832 - LRK55_RS04170 0.31 -1.1 882,832 - LRK55_RS04170 0.31 +0.3 882,832 - LRK55_RS04170 0.31 -0.1 882,832 - LRK55_RS04170 0.31 +1.0 882,832 - LRK55_RS04170 0.31 -1.6 882,896 + LRK55_RS04170 0.35 +1.0 882,897 - LRK55_RS04170 0.35 -0.5 883,074 + LRK55_RS04170 0.49 -0.2 883,074 + LRK55_RS04170 0.49 -1.8 883,075 - LRK55_RS04170 0.49 -1.2 883,075 - LRK55_RS04170 0.49 +0.8 883,320 + LRK55_RS04170 0.67 +0.8 883,320 + LRK55_RS04170 0.67 +1.0 883,320 + LRK55_RS04170 0.67 +0.5 883,321 - LRK55_RS04170 0.67 -0.4 883,321 - LRK55_RS04170 0.67 +1.1 883,321 - LRK55_RS04170 0.67 -1.3
Or see this region's nucleotide sequence