Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02885

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02880 and LRK55_RS02885 are separated by 96 nucleotidesLRK55_RS02885 and LRK55_RS02890 are separated by 66 nucleotidesLRK55_RS02890 and LRK55_RS02895 are separated by 75 nucleotides LRK55_RS02880: LRK55_RS02880 - tRNA guanosine(34) transglycosylase Tgt, at 622,932 to 624,059 _RS02880 LRK55_RS02885: LRK55_RS02885 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 624,156 to 625,187 _RS02885 LRK55_RS02890: LRK55_RS02890 - response regulator transcription factor, at 625,254 to 625,856 _RS02890 LRK55_RS02895: LRK55_RS02895 - sensor histidine kinase, at 625,932 to 627,161 _RS02895 Position (kb) 624 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.179 kb on + strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.180 kb on - strand, within LRK55_RS02880at 623.204 kb on + strand, within LRK55_RS02880at 623.246 kb on + strand, within LRK55_RS02880at 623.247 kb on - strand, within LRK55_RS02880at 623.267 kb on + strand, within LRK55_RS02880at 623.267 kb on + strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.268 kb on - strand, within LRK55_RS02880at 623.327 kb on - strand, within LRK55_RS02880at 623.423 kb on - strand, within LRK55_RS02880at 623.479 kb on + strand, within LRK55_RS02880at 623.947 kb on + strandat 623.947 kb on + strandat 623.947 kb on + strandat 623.947 kb on + strandat 623.947 kb on + strandat 623.948 kb on - strandat 623.948 kb on - strandat 623.948 kb on - strandat 623.948 kb on - strandat 624.068 kb on + strandat 624.232 kb on + strandat 624.589 kb on + strand, within LRK55_RS02885at 624.590 kb on - strand, within LRK55_RS02885at 624.590 kb on - strand, within LRK55_RS02885at 624.657 kb on - strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.737 kb on + strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.738 kb on - strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.739 kb on + strand, within LRK55_RS02885at 624.740 kb on - strand, within LRK55_RS02885at 624.740 kb on - strand, within LRK55_RS02885at 624.740 kb on - strand, within LRK55_RS02885at 624.740 kb on - strand, within LRK55_RS02885at 624.740 kb on - strand, within LRK55_RS02885at 625.222 kb on - strandat 625.255 kb on + strandat 625.255 kb on + strandat 625.255 kb on + strandat 625.256 kb on - strandat 625.256 kb on - strandat 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.336 kb on + strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.337 kb on - strand, within LRK55_RS02890at 625.555 kb on + strand, within LRK55_RS02890at 625.556 kb on - strand, within LRK55_RS02890at 625.885 kb on - strandat 625.885 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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623,179 + LRK55_RS02880 0.22 -0.3
623,179 + LRK55_RS02880 0.22 -2.5
623,179 + LRK55_RS02880 0.22 +0.3
623,179 + LRK55_RS02880 0.22 +0.8
623,179 + LRK55_RS02880 0.22 -0.9
623,179 + LRK55_RS02880 0.22 +0.3
623,179 + LRK55_RS02880 0.22 -1.0
623,179 + LRK55_RS02880 0.22 -0.9
623,179 + LRK55_RS02880 0.22 +0.7
623,179 + LRK55_RS02880 0.22 -0.3
623,179 + LRK55_RS02880 0.22 -2.9
623,180 - LRK55_RS02880 0.22 -0.9
623,180 - LRK55_RS02880 0.22 +0.0
623,180 - LRK55_RS02880 0.22 +1.3
623,180 - LRK55_RS02880 0.22 -0.3
623,180 - LRK55_RS02880 0.22 -1.6
623,180 - LRK55_RS02880 0.22 -1.6
623,180 - LRK55_RS02880 0.22 -0.5
623,204 + LRK55_RS02880 0.24 +1.0
623,246 + LRK55_RS02880 0.28 -0.0
623,247 - LRK55_RS02880 0.28 -1.3
623,267 + LRK55_RS02880 0.30 -0.7
623,267 + LRK55_RS02880 0.30 -0.3
623,268 - LRK55_RS02880 0.30 -2.0
623,268 - LRK55_RS02880 0.30 -0.7
623,268 - LRK55_RS02880 0.30 -1.0
623,268 - LRK55_RS02880 0.30 -3.5
623,268 - LRK55_RS02880 0.30 -0.0
623,268 - LRK55_RS02880 0.30 -1.3
623,268 - LRK55_RS02880 0.30 -2.8
623,268 - LRK55_RS02880 0.30 +0.2
623,327 - LRK55_RS02880 0.35 -0.7
623,423 - LRK55_RS02880 0.44 -1.3
623,479 + LRK55_RS02880 0.48 -1.9
623,947 + -0.6
623,947 + -1.7
623,947 + -1.1
623,947 + -1.1
623,947 + -1.1
623,948 - -1.5
623,948 - -0.1
623,948 - -2.0
623,948 - -1.3
624,068 + +0.1
624,232 + -0.8
624,589 + LRK55_RS02885 0.42 -1.7
624,590 - LRK55_RS02885 0.42 -0.5
624,590 - LRK55_RS02885 0.42 -0.5
624,657 - LRK55_RS02885 0.49 +4.0
624,737 + LRK55_RS02885 0.56 -1.9
624,737 + LRK55_RS02885 0.56 -1.1
624,737 + LRK55_RS02885 0.56 -0.6
624,737 + LRK55_RS02885 0.56 +2.0
624,737 + LRK55_RS02885 0.56 -0.1
624,737 + LRK55_RS02885 0.56 +0.4
624,737 + LRK55_RS02885 0.56 +1.6
624,737 + LRK55_RS02885 0.56 +0.2
624,737 + LRK55_RS02885 0.56 +1.3
624,738 - LRK55_RS02885 0.56 +0.9
624,738 - LRK55_RS02885 0.56 +0.3
624,738 - LRK55_RS02885 0.56 -0.9
624,738 - LRK55_RS02885 0.56 -0.3
624,738 - LRK55_RS02885 0.56 -0.3
624,738 - LRK55_RS02885 0.56 -0.6
624,738 - LRK55_RS02885 0.56 +0.6
624,738 - LRK55_RS02885 0.56 -0.1
624,738 - LRK55_RS02885 0.56 -1.3
624,739 + LRK55_RS02885 0.56 +1.6
624,739 + LRK55_RS02885 0.56 -0.7
624,739 + LRK55_RS02885 0.56 +0.3
624,739 + LRK55_RS02885 0.56 +1.5
624,739 + LRK55_RS02885 0.56 -0.3
624,739 + LRK55_RS02885 0.56 -1.1
624,739 + LRK55_RS02885 0.56 -1.9
624,739 + LRK55_RS02885 0.56 +0.2
624,739 + LRK55_RS02885 0.56 -2.0
624,739 + LRK55_RS02885 0.56 +2.6
624,740 - LRK55_RS02885 0.57 -0.0
624,740 - LRK55_RS02885 0.57 +1.2
624,740 - LRK55_RS02885 0.57 -1.0
624,740 - LRK55_RS02885 0.57 -0.3
624,740 - LRK55_RS02885 0.57 +1.3
625,222 - -0.3
625,255 + -0.1
625,255 + +1.9
625,255 + +0.4
625,256 - +0.8
625,256 - +2.1
625,336 + LRK55_RS02890 0.14 -0.1
625,336 + LRK55_RS02890 0.14 +0.9
625,336 + LRK55_RS02890 0.14 -0.5
625,336 + LRK55_RS02890 0.14 -0.5
625,336 + LRK55_RS02890 0.14 -1.0
625,336 + LRK55_RS02890 0.14 -2.0
625,336 + LRK55_RS02890 0.14 -0.2
625,336 + LRK55_RS02890 0.14 +0.3
625,336 + LRK55_RS02890 0.14 +0.3
625,336 + LRK55_RS02890 0.14 +1.0
625,336 + LRK55_RS02890 0.14 +0.6
625,336 + LRK55_RS02890 0.14 -0.1
625,337 - LRK55_RS02890 0.14 +0.6
625,337 - LRK55_RS02890 0.14 -0.8
625,337 - LRK55_RS02890 0.14 +0.4
625,337 - LRK55_RS02890 0.14 -0.8
625,337 - LRK55_RS02890 0.14 -0.7
625,337 - LRK55_RS02890 0.14 +0.3
625,337 - LRK55_RS02890 0.14 +0.1
625,337 - LRK55_RS02890 0.14 -0.1
625,555 + LRK55_RS02890 0.50 -0.5
625,556 - LRK55_RS02890 0.50 +0.1
625,885 - -0.4
625,885 - +1.1

Or see this region's nucleotide sequence