Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02840

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02835 and LRK55_RS02840 overlap by 4 nucleotidesLRK55_RS02840 and LRK55_RS02845 are separated by 211 nucleotides LRK55_RS02835: LRK55_RS02835 - Fe-S cluster assembly protein SufD, at 613,171 to 614,490 _RS02835 LRK55_RS02840: LRK55_RS02840 - Fe-S cluster assembly ATPase SufC, at 614,487 to 615,239 _RS02840 LRK55_RS02845: LRK55_RS02845 - Fe-S cluster assembly protein SufB, at 615,451 to 616,917 _RS02845 Position (kb) 614 615 616Strain fitness (log2 ratio) -1 0 1 2 3at 615.259 kb on - strandat 615.259 kb on - strandat 615.379 kb on - strandat 615.379 kb on - strandat 615.379 kb on - strandat 615.446 kb on - strandat 615.446 kb on - strandat 615.446 kb on - strandat 615.446 kb on - strandat 615.446 kb on - strandat 615.446 kb on - strandat 615.446 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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615,259 - -0.0
615,259 - +1.1
615,379 - +0.0
615,379 - -0.4
615,379 - -1.7
615,446 - +0.6
615,446 - -0.2
615,446 - +3.0
615,446 - -1.3
615,446 - -0.5
615,446 - -0.7
615,446 - -0.3

Or see this region's nucleotide sequence