Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02795 and LRK55_RS02800 overlap by 27 nucleotides LRK55_RS02800 and LRK55_RS02805 are separated by 50 nucleotides LRK55_RS02805 and LRK55_RS02810 overlap by 4 nucleotides LRK55_RS02810 and LRK55_RS02815 are separated by 176 nucleotides
LRK55_RS02795: LRK55_RS02795 - MipA/OmpV family protein, at 605,057 to 605,839
_RS02795
LRK55_RS02800: LRK55_RS02800 - type II CAAX endopeptidase family protein, at 605,813 to 606,586
_RS02800
LRK55_RS02805: LRK55_RS02805 - non-heme iron oxygenase ferredoxin subunit, at 606,637 to 606,951
_RS02805
LRK55_RS02810: LRK55_RS02810 - GNAT family N-acetyltransferase, at 606,948 to 607,496
_RS02810
LRK55_RS02815: LRK55_RS02815 - M13 family metallopeptidase, at 607,673 to 609,709
_RS02815
Position (kb) 606
607 Strain fitness (log2 ratio) -2
-1
0
1
2 at 605.684 kb on + strand, within LRK55_RS02795 at 605.684 kb on + strand, within LRK55_RS02795 at 605.684 kb on + strand, within LRK55_RS02795 at 605.685 kb on - strand, within LRK55_RS02795 at 605.685 kb on - strand, within LRK55_RS02795 at 605.685 kb on - strand, within LRK55_RS02795 at 605.738 kb on + strand, within LRK55_RS02795 at 605.738 kb on + strand, within LRK55_RS02795 at 605.739 kb on - strand, within LRK55_RS02795 at 605.739 kb on - strand, within LRK55_RS02795 at 605.828 kb on + strand at 605.828 kb on + strand at 605.828 kb on + strand at 605.828 kb on + strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.829 kb on - strand at 605.868 kb on - strand at 605.868 kb on - strand at 606.036 kb on + strand, within LRK55_RS02800 at 606.036 kb on + strand, within LRK55_RS02800 at 606.093 kb on + strand, within LRK55_RS02800 at 606.093 kb on + strand, within LRK55_RS02800 at 606.093 kb on + strand, within LRK55_RS02800 at 606.093 kb on + strand, within LRK55_RS02800 at 606.094 kb on - strand, within LRK55_RS02800 at 606.094 kb on - strand, within LRK55_RS02800 at 606.094 kb on - strand, within LRK55_RS02800 at 606.094 kb on - strand, within LRK55_RS02800 at 606.094 kb on - strand, within LRK55_RS02800 at 606.094 kb on - strand, within LRK55_RS02800 at 606.094 kb on - strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.111 kb on + strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.112 kb on - strand, within LRK55_RS02800 at 606.174 kb on + strand, within LRK55_RS02800 at 606.297 kb on + strand, within LRK55_RS02800 at 606.297 kb on + strand, within LRK55_RS02800 at 606.297 kb on + strand, within LRK55_RS02800 at 606.391 kb on + strand, within LRK55_RS02800 at 606.392 kb on - strand, within LRK55_RS02800 at 606.392 kb on - strand, within LRK55_RS02800 at 606.392 kb on - strand, within LRK55_RS02800 at 606.534 kb on + strand at 606.534 kb on + strand at 606.534 kb on + strand at 606.534 kb on + strand at 606.534 kb on + strand at 606.534 kb on + strand at 606.535 kb on - strand at 606.635 kb on + strand at 606.636 kb on - strand at 606.636 kb on - strand at 606.704 kb on + strand, within LRK55_RS02805 at 606.840 kb on - strand, within LRK55_RS02805 at 606.840 kb on - strand, within LRK55_RS02805 at 606.860 kb on + strand, within LRK55_RS02805 at 606.860 kb on + strand, within LRK55_RS02805 at 606.860 kb on + strand, within LRK55_RS02805 at 606.860 kb on + strand, within LRK55_RS02805 at 606.861 kb on - strand, within LRK55_RS02805 at 606.861 kb on - strand, within LRK55_RS02805 at 606.861 kb on - strand, within LRK55_RS02805 at 606.861 kb on - strand, within LRK55_RS02805 at 606.861 kb on - strand, within LRK55_RS02805 at 606.861 kb on - strand, within LRK55_RS02805 at 606.861 kb on - strand, within LRK55_RS02805 at 606.899 kb on + strand, within LRK55_RS02805 at 606.899 kb on + strand, within LRK55_RS02805 at 606.899 kb on + strand, within LRK55_RS02805 at 606.899 kb on + strand, within LRK55_RS02805 at 606.899 kb on + strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.900 kb on - strand, within LRK55_RS02805 at 606.981 kb on + strand at 606.981 kb on + strand at 606.982 kb on - strand at 607.033 kb on + strand, within LRK55_RS02810 at 607.048 kb on + strand, within LRK55_RS02810 at 607.048 kb on + strand, within LRK55_RS02810 at 607.049 kb on - strand, within LRK55_RS02810 at 607.058 kb on + strand, within LRK55_RS02810 at 607.081 kb on + strand, within LRK55_RS02810 at 607.234 kb on + strand, within LRK55_RS02810 at 607.234 kb on + strand, within LRK55_RS02810 at 607.234 kb on + strand, within LRK55_RS02810 at 607.234 kb on + strand, within LRK55_RS02810 at 607.235 kb on - strand, within LRK55_RS02810 at 607.235 kb on - strand, within LRK55_RS02810 at 607.235 kb on - strand, within LRK55_RS02810 at 607.508 kb on + strand at 607.508 kb on + strand at 607.508 kb on + strand at 607.508 kb on + strand at 607.509 kb on - strand at 607.509 kb on - strand at 607.509 kb on - strand at 607.509 kb on - strand at 607.597 kb on - strand at 607.597 kb on - strand at 607.672 kb on + strand at 607.672 kb on + strand at 607.672 kb on + strand at 607.672 kb on + strand at 607.672 kb on + strand at 607.672 kb on + strand at 607.672 kb on + strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand at 607.673 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM remove 605,684 + LRK55_RS02795 0.80 +0.3 605,684 + LRK55_RS02795 0.80 -0.3 605,684 + LRK55_RS02795 0.80 -0.5 605,685 - LRK55_RS02795 0.80 +0.5 605,685 - LRK55_RS02795 0.80 -2.6 605,685 - LRK55_RS02795 0.80 -1.0 605,738 + LRK55_RS02795 0.87 -0.1 605,738 + LRK55_RS02795 0.87 -0.4 605,739 - LRK55_RS02795 0.87 +0.2 605,739 - LRK55_RS02795 0.87 +0.0 605,828 + +0.3 605,828 + -1.6 605,828 + +0.8 605,828 + +0.3 605,829 - -2.0 605,829 - -1.3 605,829 - +1.3 605,829 - -1.4 605,829 - -0.7 605,829 - -1.9 605,868 - +0.7 605,868 - -1.0 606,036 + LRK55_RS02800 0.29 +0.3 606,036 + LRK55_RS02800 0.29 +2.0 606,093 + LRK55_RS02800 0.36 +0.1 606,093 + LRK55_RS02800 0.36 +0.2 606,093 + LRK55_RS02800 0.36 +0.1 606,093 + LRK55_RS02800 0.36 -0.8 606,094 - LRK55_RS02800 0.36 +0.7 606,094 - LRK55_RS02800 0.36 +0.6 606,094 - LRK55_RS02800 0.36 -1.4 606,094 - LRK55_RS02800 0.36 -0.1 606,094 - LRK55_RS02800 0.36 +0.3 606,094 - LRK55_RS02800 0.36 -0.5 606,094 - LRK55_RS02800 0.36 +0.4 606,111 + LRK55_RS02800 0.39 -0.2 606,111 + LRK55_RS02800 0.39 -0.3 606,111 + LRK55_RS02800 0.39 +0.8 606,111 + LRK55_RS02800 0.39 +0.2 606,111 + LRK55_RS02800 0.39 +1.8 606,111 + LRK55_RS02800 0.39 +0.0 606,111 + LRK55_RS02800 0.39 +1.2 606,111 + LRK55_RS02800 0.39 -2.6 606,111 + LRK55_RS02800 0.39 -0.7 606,112 - LRK55_RS02800 0.39 -0.6 606,112 - LRK55_RS02800 0.39 -1.0 606,112 - LRK55_RS02800 0.39 +1.1 606,112 - LRK55_RS02800 0.39 +1.6 606,112 - LRK55_RS02800 0.39 +0.1 606,112 - LRK55_RS02800 0.39 -0.3 606,112 - LRK55_RS02800 0.39 -1.3 606,112 - LRK55_RS02800 0.39 -0.7 606,112 - LRK55_RS02800 0.39 -1.3 606,112 - LRK55_RS02800 0.39 -0.3 606,112 - LRK55_RS02800 0.39 -0.7 606,112 - LRK55_RS02800 0.39 -1.2 606,174 + LRK55_RS02800 0.47 -0.8 606,297 + LRK55_RS02800 0.63 -0.7 606,297 + LRK55_RS02800 0.63 +0.5 606,297 + LRK55_RS02800 0.63 -1.0 606,391 + LRK55_RS02800 0.75 +1.3 606,392 - LRK55_RS02800 0.75 +1.3 606,392 - LRK55_RS02800 0.75 +1.2 606,392 - LRK55_RS02800 0.75 -1.9 606,534 + +1.0 606,534 + +1.3 606,534 + -2.2 606,534 + -0.4 606,534 + -0.4 606,534 + -1.3 606,535 - +0.6 606,635 + +0.5 606,636 - +0.5 606,636 - -0.2 606,704 + LRK55_RS02805 0.21 +0.8 606,840 - LRK55_RS02805 0.64 -0.1 606,840 - LRK55_RS02805 0.64 +0.1 606,860 + LRK55_RS02805 0.71 -0.1 606,860 + LRK55_RS02805 0.71 -1.1 606,860 + LRK55_RS02805 0.71 +0.4 606,860 + LRK55_RS02805 0.71 +1.3 606,861 - LRK55_RS02805 0.71 +0.1 606,861 - LRK55_RS02805 0.71 -0.2 606,861 - LRK55_RS02805 0.71 -0.7 606,861 - LRK55_RS02805 0.71 +1.7 606,861 - LRK55_RS02805 0.71 -0.3 606,861 - LRK55_RS02805 0.71 +0.5 606,861 - LRK55_RS02805 0.71 -0.4 606,899 + LRK55_RS02805 0.83 +0.7 606,899 + LRK55_RS02805 0.83 -0.7 606,899 + LRK55_RS02805 0.83 +0.2 606,899 + LRK55_RS02805 0.83 +0.2 606,899 + LRK55_RS02805 0.83 -0.0 606,900 - LRK55_RS02805 0.83 -0.4 606,900 - LRK55_RS02805 0.83 -1.3 606,900 - LRK55_RS02805 0.83 +0.6 606,900 - LRK55_RS02805 0.83 -0.2 606,900 - LRK55_RS02805 0.83 +0.0 606,900 - LRK55_RS02805 0.83 -1.0 606,900 - LRK55_RS02805 0.83 +1.6 606,900 - LRK55_RS02805 0.83 -2.3 606,900 - LRK55_RS02805 0.83 +0.2 606,900 - LRK55_RS02805 0.83 +0.4 606,900 - LRK55_RS02805 0.83 -1.9 606,981 + -1.4 606,981 + +0.8 606,982 - +0.1 607,033 + LRK55_RS02810 0.15 -0.1 607,048 + LRK55_RS02810 0.18 +0.2 607,048 + LRK55_RS02810 0.18 +0.3 607,049 - LRK55_RS02810 0.18 +0.9 607,058 + LRK55_RS02810 0.20 +0.5 607,081 + LRK55_RS02810 0.24 -1.0 607,234 + LRK55_RS02810 0.52 +0.2 607,234 + LRK55_RS02810 0.52 +0.1 607,234 + LRK55_RS02810 0.52 +0.7 607,234 + LRK55_RS02810 0.52 +0.1 607,235 - LRK55_RS02810 0.52 -0.1 607,235 - LRK55_RS02810 0.52 -1.0 607,235 - LRK55_RS02810 0.52 +0.0 607,508 + -2.4 607,508 + +1.0 607,508 + -0.4 607,508 + +0.5 607,509 - +0.7 607,509 - -1.4 607,509 - -1.3 607,509 - -1.9 607,597 - +0.1 607,597 - +1.0 607,672 + -1.5 607,672 + -2.2 607,672 + +1.0 607,672 + +0.3 607,672 + -0.9 607,672 + +0.2 607,672 + -1.0 607,673 - +0.2 607,673 - -0.3 607,673 - +0.0 607,673 - -0.0 607,673 - +0.2 607,673 - -1.9 607,673 - -0.6 607,673 - +1.7 607,673 - +0.1 607,673 - -1.0 607,673 - -0.0
Or see this region's nucleotide sequence