Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02330 and LRK55_RS02335 are separated by 30 nucleotides LRK55_RS02335 and LRK55_RS02340 overlap by 4 nucleotides LRK55_RS02340 and LRK55_RS02345 are separated by 84 nucleotides LRK55_RS02345 and LRK55_RS02350 are separated by 188 nucleotides
LRK55_RS02330: LRK55_RS02330 - aldehyde dehydrogenase, at 504,909 to 506,396
_RS02330
LRK55_RS02335: LRK55_RS02335 - carbonate dehydratase, at 506,427 to 507,092
_RS02335
LRK55_RS02340: LRK55_RS02340 - Rid family hydrolase, at 507,089 to 507,520
_RS02340
LRK55_RS02345: LRK55_RS02345 - hypothetical protein, at 507,605 to 507,862
_RS02345
LRK55_RS02350: LRK55_RS02350 - N-formylglutamate deformylase, at 508,051 to 508,830
_RS02350
Position (kb) 506
507
508 Strain fitness (log2 ratio) -2
-1
0
1 at 505.815 kb on + strand, within LRK55_RS02330 at 505.815 kb on + strand, within LRK55_RS02330 at 505.815 kb on + strand, within LRK55_RS02330 at 505.815 kb on + strand, within LRK55_RS02330 at 505.816 kb on - strand, within LRK55_RS02330 at 505.816 kb on - strand, within LRK55_RS02330 at 505.837 kb on - strand, within LRK55_RS02330 at 505.920 kb on + strand, within LRK55_RS02330 at 505.920 kb on + strand, within LRK55_RS02330 at 505.921 kb on - strand, within LRK55_RS02330 at 506.370 kb on + strand at 506.370 kb on + strand at 506.371 kb on - strand at 506.395 kb on - strand at 507.258 kb on - strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.389 kb on + strand, within LRK55_RS02340 at 507.390 kb on - strand, within LRK55_RS02340 at 507.390 kb on - strand, within LRK55_RS02340 at 507.390 kb on - strand, within LRK55_RS02340 at 507.390 kb on - strand, within LRK55_RS02340 at 507.402 kb on - strand, within LRK55_RS02340 at 507.402 kb on - strand, within LRK55_RS02340 at 507.410 kb on + strand, within LRK55_RS02340 at 507.411 kb on - strand, within LRK55_RS02340 at 507.411 kb on - strand, within LRK55_RS02340 at 507.411 kb on - strand, within LRK55_RS02340 at 507.411 kb on - strand, within LRK55_RS02340 at 507.595 kb on + strand at 507.595 kb on + strand at 507.595 kb on + strand at 507.853 kb on + strand at 507.853 kb on + strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.854 kb on - strand at 507.889 kb on - strand at 507.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM remove 505,815 + LRK55_RS02330 0.61 +0.5 505,815 + LRK55_RS02330 0.61 -0.8 505,815 + LRK55_RS02330 0.61 +0.6 505,815 + LRK55_RS02330 0.61 +1.2 505,816 - LRK55_RS02330 0.61 +0.7 505,816 - LRK55_RS02330 0.61 -0.7 505,837 - LRK55_RS02330 0.62 +0.1 505,920 + LRK55_RS02330 0.68 -0.6 505,920 + LRK55_RS02330 0.68 +0.8 505,921 - LRK55_RS02330 0.68 -0.7 506,370 + +0.5 506,370 + +0.1 506,371 - -0.4 506,395 - -0.5 507,258 - LRK55_RS02340 0.39 -0.5 507,389 + LRK55_RS02340 0.69 -0.8 507,389 + LRK55_RS02340 0.69 -0.0 507,389 + LRK55_RS02340 0.69 -0.2 507,389 + LRK55_RS02340 0.69 -0.4 507,389 + LRK55_RS02340 0.69 +1.7 507,389 + LRK55_RS02340 0.69 +0.2 507,389 + LRK55_RS02340 0.69 -0.2 507,389 + LRK55_RS02340 0.69 +0.8 507,389 + LRK55_RS02340 0.69 +0.7 507,390 - LRK55_RS02340 0.70 +0.8 507,390 - LRK55_RS02340 0.70 -0.5 507,390 - LRK55_RS02340 0.70 -0.9 507,390 - LRK55_RS02340 0.70 -0.8 507,402 - LRK55_RS02340 0.72 -2.0 507,402 - LRK55_RS02340 0.72 -0.9 507,410 + LRK55_RS02340 0.74 +0.7 507,411 - LRK55_RS02340 0.75 +0.0 507,411 - LRK55_RS02340 0.75 +0.3 507,411 - LRK55_RS02340 0.75 +0.3 507,411 - LRK55_RS02340 0.75 -0.3 507,595 + -0.6 507,595 + +0.1 507,595 + +0.8 507,853 + -1.0 507,853 + -0.1 507,854 - -1.0 507,854 - -0.7 507,854 - +0.8 507,854 - +0.1 507,889 - -1.0 507,958 - +0.9
Or see this region's nucleotide sequence