Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS02180 and LRK55_RS02185 are separated by 119 nucleotides LRK55_RS02185 and LRK55_RS02190 are separated by 304 nucleotides LRK55_RS02190 and LRK55_RS02195 are separated by 110 nucleotides
LRK55_RS02180: LRK55_RS02180 - cysteine--tRNA ligase, at 476,398 to 477,768
_RS02180
LRK55_RS02185: LRK55_RS02185 - SufE family protein, at 477,888 to 478,322
_RS02185
LRK55_RS02190: LRK55_RS02190 - TonB-dependent siderophore receptor, at 478,627 to 480,726
_RS02190
LRK55_RS02195: LRK55_RS02195 - RNA polymerase-binding protein DksA, at 480,837 to 482,096
_RS02195
Position (kb) 478
479
480
481 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 477.792 kb on + strand at 477.792 kb on + strand at 477.793 kb on - strand at 478.374 kb on + strand at 478.374 kb on + strand at 478.374 kb on + strand at 478.374 kb on + strand at 478.375 kb on - strand at 478.453 kb on + strand at 478.454 kb on - strand at 478.454 kb on - strand at 478.759 kb on + strand at 479.005 kb on + strand, within LRK55_RS02190 at 479.005 kb on + strand, within LRK55_RS02190 at 479.006 kb on - strand, within LRK55_RS02190 at 479.006 kb on - strand, within LRK55_RS02190 at 479.068 kb on + strand, within LRK55_RS02190 at 479.068 kb on + strand, within LRK55_RS02190 at 479.069 kb on - strand, within LRK55_RS02190 at 479.069 kb on - strand, within LRK55_RS02190 at 479.149 kb on + strand, within LRK55_RS02190 at 479.149 kb on + strand, within LRK55_RS02190 at 479.150 kb on - strand, within LRK55_RS02190 at 479.347 kb on + strand, within LRK55_RS02190 at 479.347 kb on + strand, within LRK55_RS02190 at 479.348 kb on - strand, within LRK55_RS02190 at 479.348 kb on - strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.425 kb on + strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.426 kb on - strand, within LRK55_RS02190 at 479.428 kb on + strand, within LRK55_RS02190 at 479.428 kb on + strand, within LRK55_RS02190 at 479.429 kb on - strand, within LRK55_RS02190 at 479.429 kb on - strand, within LRK55_RS02190 at 479.429 kb on - strand, within LRK55_RS02190 at 479.545 kb on + strand, within LRK55_RS02190 at 479.545 kb on + strand, within LRK55_RS02190 at 479.546 kb on - strand, within LRK55_RS02190 at 479.546 kb on - strand, within LRK55_RS02190 at 479.546 kb on - strand, within LRK55_RS02190 at 479.546 kb on - strand, within LRK55_RS02190 at 479.551 kb on + strand, within LRK55_RS02190 at 479.551 kb on + strand, within LRK55_RS02190 at 479.551 kb on + strand, within LRK55_RS02190 at 479.551 kb on + strand, within LRK55_RS02190 at 479.551 kb on + strand, within LRK55_RS02190 at 479.551 kb on + strand, within LRK55_RS02190 at 479.551 kb on + strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.552 kb on - strand, within LRK55_RS02190 at 479.713 kb on + strand, within LRK55_RS02190 at 479.713 kb on + strand, within LRK55_RS02190 at 479.713 kb on + strand, within LRK55_RS02190 at 479.714 kb on - strand, within LRK55_RS02190 at 479.875 kb on + strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.876 kb on - strand, within LRK55_RS02190 at 479.933 kb on - strand, within LRK55_RS02190 at 479.953 kb on - strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.052 kb on + strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.053 kb on - strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.055 kb on + strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.056 kb on - strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.166 kb on + strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.167 kb on - strand, within LRK55_RS02190 at 480.346 kb on + strand, within LRK55_RS02190 at 480.347 kb on - strand, within LRK55_RS02190 at 480.554 kb on - strand at 480.554 kb on - strand at 480.554 kb on - strand at 480.554 kb on - strand at 480.580 kb on + strand at 480.637 kb on + strand at 480.637 kb on + strand at 480.637 kb on + strand at 480.637 kb on + strand at 480.638 kb on - strand at 480.638 kb on - strand at 480.638 kb on - strand at 480.638 kb on - strand at 480.724 kb on + strand at 480.724 kb on + strand at 480.724 kb on + strand at 480.725 kb on - strand at 480.725 kb on - strand at 480.725 kb on - strand at 481.459 kb on - strand, within LRK55_RS02195
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM remove 477,792 + +0.9 477,792 + +0.7 477,793 - -0.3 478,374 + -0.9 478,374 + -1.9 478,374 + +1.0 478,374 + -2.1 478,375 - -0.7 478,453 + +1.1 478,454 - +0.7 478,454 - -0.6 478,759 + -0.6 479,005 + LRK55_RS02190 0.18 -0.9 479,005 + LRK55_RS02190 0.18 -0.8 479,006 - LRK55_RS02190 0.18 -0.8 479,006 - LRK55_RS02190 0.18 -0.0 479,068 + LRK55_RS02190 0.21 -2.5 479,068 + LRK55_RS02190 0.21 -1.4 479,069 - LRK55_RS02190 0.21 -1.2 479,069 - LRK55_RS02190 0.21 -2.4 479,149 + LRK55_RS02190 0.25 +0.0 479,149 + LRK55_RS02190 0.25 +0.3 479,150 - LRK55_RS02190 0.25 +0.3 479,347 + LRK55_RS02190 0.34 +0.3 479,347 + LRK55_RS02190 0.34 -0.4 479,348 - LRK55_RS02190 0.34 +0.1 479,348 - LRK55_RS02190 0.34 +0.3 479,425 + LRK55_RS02190 0.38 -1.9 479,425 + LRK55_RS02190 0.38 -1.2 479,425 + LRK55_RS02190 0.38 +1.5 479,425 + LRK55_RS02190 0.38 -1.0 479,425 + LRK55_RS02190 0.38 +0.5 479,425 + LRK55_RS02190 0.38 -1.1 479,425 + LRK55_RS02190 0.38 -1.7 479,425 + LRK55_RS02190 0.38 +1.3 479,425 + LRK55_RS02190 0.38 +0.3 479,425 + LRK55_RS02190 0.38 -0.3 479,425 + LRK55_RS02190 0.38 -3.2 479,425 + LRK55_RS02190 0.38 -2.5 479,425 + LRK55_RS02190 0.38 +0.1 479,425 + LRK55_RS02190 0.38 -0.6 479,426 - LRK55_RS02190 0.38 -2.9 479,426 - LRK55_RS02190 0.38 -0.9 479,426 - LRK55_RS02190 0.38 -1.5 479,426 - LRK55_RS02190 0.38 -0.0 479,426 - LRK55_RS02190 0.38 -2.8 479,426 - LRK55_RS02190 0.38 -1.2 479,426 - LRK55_RS02190 0.38 -1.1 479,426 - LRK55_RS02190 0.38 +1.3 479,426 - LRK55_RS02190 0.38 -0.3 479,426 - LRK55_RS02190 0.38 -0.9 479,426 - LRK55_RS02190 0.38 -2.5 479,426 - LRK55_RS02190 0.38 -0.8 479,426 - LRK55_RS02190 0.38 -0.5 479,426 - LRK55_RS02190 0.38 +0.3 479,426 - LRK55_RS02190 0.38 +0.1 479,426 - LRK55_RS02190 0.38 -0.3 479,428 + LRK55_RS02190 0.38 -2.3 479,428 + LRK55_RS02190 0.38 -0.4 479,429 - LRK55_RS02190 0.38 -0.2 479,429 - LRK55_RS02190 0.38 -0.4 479,429 - LRK55_RS02190 0.38 -0.7 479,545 + LRK55_RS02190 0.44 +0.7 479,545 + LRK55_RS02190 0.44 +0.1 479,546 - LRK55_RS02190 0.44 -0.9 479,546 - LRK55_RS02190 0.44 -0.7 479,546 - LRK55_RS02190 0.44 -0.2 479,546 - LRK55_RS02190 0.44 -1.0 479,551 + LRK55_RS02190 0.44 +0.2 479,551 + LRK55_RS02190 0.44 -0.8 479,551 + LRK55_RS02190 0.44 -0.8 479,551 + LRK55_RS02190 0.44 -1.6 479,551 + LRK55_RS02190 0.44 -0.7 479,551 + LRK55_RS02190 0.44 +1.3 479,551 + LRK55_RS02190 0.44 -1.3 479,552 - LRK55_RS02190 0.44 -2.3 479,552 - LRK55_RS02190 0.44 +0.3 479,552 - LRK55_RS02190 0.44 +0.2 479,552 - LRK55_RS02190 0.44 -1.2 479,552 - LRK55_RS02190 0.44 +0.0 479,552 - LRK55_RS02190 0.44 +0.7 479,552 - LRK55_RS02190 0.44 -1.5 479,552 - LRK55_RS02190 0.44 +0.6 479,713 + LRK55_RS02190 0.52 -0.4 479,713 + LRK55_RS02190 0.52 -0.5 479,713 + LRK55_RS02190 0.52 -0.2 479,714 - LRK55_RS02190 0.52 +0.6 479,875 + LRK55_RS02190 0.59 -1.8 479,876 - LRK55_RS02190 0.59 -3.0 479,876 - LRK55_RS02190 0.59 -3.4 479,876 - LRK55_RS02190 0.59 -1.5 479,876 - LRK55_RS02190 0.59 -1.2 479,876 - LRK55_RS02190 0.59 -1.8 479,933 - LRK55_RS02190 0.62 -1.2 479,953 - LRK55_RS02190 0.63 -0.5 480,052 + LRK55_RS02190 0.68 -0.4 480,052 + LRK55_RS02190 0.68 -1.2 480,052 + LRK55_RS02190 0.68 +0.7 480,052 + LRK55_RS02190 0.68 +0.1 480,052 + LRK55_RS02190 0.68 -0.3 480,052 + LRK55_RS02190 0.68 -0.5 480,052 + LRK55_RS02190 0.68 -2.0 480,052 + LRK55_RS02190 0.68 -1.2 480,053 - LRK55_RS02190 0.68 -0.7 480,053 - LRK55_RS02190 0.68 -0.4 480,053 - LRK55_RS02190 0.68 +0.6 480,053 - LRK55_RS02190 0.68 +0.7 480,053 - LRK55_RS02190 0.68 -1.3 480,053 - LRK55_RS02190 0.68 -0.1 480,053 - LRK55_RS02190 0.68 +0.0 480,053 - LRK55_RS02190 0.68 -2.7 480,055 + LRK55_RS02190 0.68 -1.4 480,055 + LRK55_RS02190 0.68 -1.9 480,055 + LRK55_RS02190 0.68 +0.2 480,055 + LRK55_RS02190 0.68 -1.2 480,055 + LRK55_RS02190 0.68 -1.5 480,055 + LRK55_RS02190 0.68 +0.5 480,055 + LRK55_RS02190 0.68 -2.1 480,055 + LRK55_RS02190 0.68 -0.4 480,055 + LRK55_RS02190 0.68 -1.4 480,055 + LRK55_RS02190 0.68 -0.1 480,055 + LRK55_RS02190 0.68 +0.7 480,055 + LRK55_RS02190 0.68 -0.5 480,056 - LRK55_RS02190 0.68 -1.9 480,056 - LRK55_RS02190 0.68 -1.8 480,056 - LRK55_RS02190 0.68 -1.9 480,056 - LRK55_RS02190 0.68 +0.9 480,056 - LRK55_RS02190 0.68 -0.8 480,056 - LRK55_RS02190 0.68 -0.4 480,056 - LRK55_RS02190 0.68 -0.2 480,056 - LRK55_RS02190 0.68 -0.7 480,166 + LRK55_RS02190 0.73 -0.1 480,166 + LRK55_RS02190 0.73 -2.5 480,166 + LRK55_RS02190 0.73 -0.8 480,166 + LRK55_RS02190 0.73 -0.6 480,166 + LRK55_RS02190 0.73 -0.9 480,166 + LRK55_RS02190 0.73 +1.3 480,166 + LRK55_RS02190 0.73 -0.2 480,166 + LRK55_RS02190 0.73 -0.6 480,167 - LRK55_RS02190 0.73 -0.6 480,167 - LRK55_RS02190 0.73 -0.6 480,167 - LRK55_RS02190 0.73 -0.3 480,167 - LRK55_RS02190 0.73 -0.5 480,167 - LRK55_RS02190 0.73 -2.6 480,167 - LRK55_RS02190 0.73 -0.6 480,167 - LRK55_RS02190 0.73 -1.2 480,346 + LRK55_RS02190 0.82 +0.6 480,347 - LRK55_RS02190 0.82 -2.0 480,554 - -0.5 480,554 - +0.1 480,554 - -0.5 480,554 - -0.7 480,580 + -0.3 480,637 + +0.0 480,637 + -1.0 480,637 + -0.7 480,637 + -0.8 480,638 - -2.1 480,638 - -0.7 480,638 - -1.2 480,638 - +0.1 480,724 + -1.0 480,724 + -0.4 480,724 + +0.7 480,725 - +0.1 480,725 - +0.5 480,725 - +1.3 481,459 - LRK55_RS02195 0.49 -1.0
Or see this region's nucleotide sequence