Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS01880

Experiment: R2A_PIPES with Aluminum chloride 0.140625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS01875 and LRK55_RS01880 are separated by 174 nucleotidesLRK55_RS01880 and LRK55_RS01885 are separated by 132 nucleotides LRK55_RS01875: LRK55_RS01875 - multidrug efflux RND transporter permease subunit, at 400,900 to 404,067 _RS01875 LRK55_RS01880: LRK55_RS01880 - acyl-CoA dehydrogenase family protein, at 404,242 to 405,402 _RS01880 LRK55_RS01885: LRK55_RS01885 - metalloregulator ArsR/SmtB family transcription factor, at 405,535 to 406,464 _RS01885 Position (kb) 404 405 406Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 403.342 kb on + strand, within LRK55_RS01875at 403.342 kb on + strand, within LRK55_RS01875at 403.351 kb on + strand, within LRK55_RS01875at 403.352 kb on - strand, within LRK55_RS01875at 403.480 kb on + strand, within LRK55_RS01875at 403.480 kb on + strand, within LRK55_RS01875at 403.481 kb on - strand, within LRK55_RS01875at 403.481 kb on - strand, within LRK55_RS01875at 403.564 kb on + strand, within LRK55_RS01875at 403.564 kb on + strand, within LRK55_RS01875at 403.565 kb on - strand, within LRK55_RS01875at 403.565 kb on - strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.666 kb on + strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.667 kb on - strand, within LRK55_RS01875at 403.963 kb on + strandat 403.963 kb on + strandat 403.963 kb on + strandat 403.963 kb on + strandat 403.963 kb on + strandat 403.963 kb on + strandat 403.963 kb on + strandat 403.964 kb on - strandat 403.964 kb on - strandat 403.964 kb on - strandat 403.964 kb on - strandat 403.964 kb on - strandat 403.964 kb on - strandat 403.964 kb on - strandat 404.139 kb on + strandat 404.139 kb on + strandat 404.170 kb on + strandat 404.170 kb on + strandat 404.225 kb on - strandat 404.303 kb on + strandat 404.303 kb on + strandat 404.303 kb on + strandat 404.303 kb on + strandat 404.303 kb on + strandat 404.303 kb on + strandat 404.303 kb on + strandat 404.304 kb on - strandat 404.304 kb on - strandat 404.304 kb on - strandat 404.304 kb on - strandat 404.304 kb on - strandat 404.333 kb on + strandat 404.334 kb on - strandat 404.334 kb on - strandat 404.335 kb on - strandat 404.361 kb on - strand, within LRK55_RS01880at 404.750 kb on + strand, within LRK55_RS01880at 404.750 kb on + strand, within LRK55_RS01880at 404.750 kb on + strand, within LRK55_RS01880at 404.750 kb on + strand, within LRK55_RS01880at 404.751 kb on - strand, within LRK55_RS01880at 404.751 kb on - strand, within LRK55_RS01880at 404.751 kb on - strand, within LRK55_RS01880at 404.906 kb on + strand, within LRK55_RS01880at 404.906 kb on + strand, within LRK55_RS01880at 404.906 kb on + strand, within LRK55_RS01880at 404.907 kb on - strand, within LRK55_RS01880at 404.907 kb on - strand, within LRK55_RS01880at 404.907 kb on - strand, within LRK55_RS01880at 404.907 kb on - strand, within LRK55_RS01880at 404.907 kb on - strand, within LRK55_RS01880at 405.074 kb on + strand, within LRK55_RS01880at 405.074 kb on + strand, within LRK55_RS01880at 405.074 kb on + strand, within LRK55_RS01880at 405.074 kb on + strand, within LRK55_RS01880at 405.074 kb on + strand, within LRK55_RS01880at 405.074 kb on + strand, within LRK55_RS01880at 405.075 kb on - strand, within LRK55_RS01880at 405.075 kb on - strand, within LRK55_RS01880at 405.075 kb on - strand, within LRK55_RS01880at 405.075 kb on - strand, within LRK55_RS01880at 405.198 kb on - strand, within LRK55_RS01880at 405.198 kb on - strand, within LRK55_RS01880at 405.198 kb on - strand, within LRK55_RS01880at 405.198 kb on - strand, within LRK55_RS01880at 405.198 kb on - strand, within LRK55_RS01880at 405.227 kb on + strand, within LRK55_RS01880at 405.227 kb on + strand, within LRK55_RS01880at 405.239 kb on - strand, within LRK55_RS01880at 405.497 kb on - strandat 405.503 kb on + strandat 405.503 kb on + strandat 405.503 kb on + strandat 405.504 kb on - strandat 405.504 kb on - strandat 405.504 kb on - strandat 405.513 kb on + strandat 405.522 kb on - strandat 405.606 kb on - strandat 405.656 kb on + strand, within LRK55_RS01885at 405.656 kb on + strand, within LRK55_RS01885at 405.656 kb on + strand, within LRK55_RS01885at 405.656 kb on + strand, within LRK55_RS01885at 405.656 kb on + strand, within LRK55_RS01885at 405.657 kb on - strand, within LRK55_RS01885at 405.657 kb on - strand, within LRK55_RS01885at 405.657 kb on - strand, within LRK55_RS01885at 405.657 kb on - strand, within LRK55_RS01885at 405.657 kb on - strand, within LRK55_RS01885at 405.739 kb on + strand, within LRK55_RS01885at 405.740 kb on - strand, within LRK55_RS01885at 405.740 kb on - strand, within LRK55_RS01885at 405.740 kb on - strand, within LRK55_RS01885at 405.742 kb on + strand, within LRK55_RS01885at 405.742 kb on + strand, within LRK55_RS01885at 405.743 kb on - strand, within LRK55_RS01885at 405.917 kb on - strand, within LRK55_RS01885at 406.198 kb on + strand, within LRK55_RS01885at 406.199 kb on - strand, within LRK55_RS01885at 406.382 kb on + strandat 406.382 kb on + strandat 406.382 kb on + strandat 406.383 kb on - strandat 406.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A_PIPES with Aluminum chloride 0.140625 mM
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403,342 + LRK55_RS01875 0.77 -2.7
403,342 + LRK55_RS01875 0.77 +0.3
403,351 + LRK55_RS01875 0.77 -0.3
403,352 - LRK55_RS01875 0.77 +0.8
403,480 + LRK55_RS01875 0.81 -0.3
403,480 + LRK55_RS01875 0.81 -1.0
403,481 - LRK55_RS01875 0.81 +1.0
403,481 - LRK55_RS01875 0.81 +0.2
403,564 + LRK55_RS01875 0.84 -0.0
403,564 + LRK55_RS01875 0.84 +0.4
403,565 - LRK55_RS01875 0.84 -2.7
403,565 - LRK55_RS01875 0.84 -2.3
403,666 + LRK55_RS01875 0.87 +2.6
403,666 + LRK55_RS01875 0.87 -0.4
403,666 + LRK55_RS01875 0.87 -0.6
403,666 + LRK55_RS01875 0.87 -2.2
403,666 + LRK55_RS01875 0.87 -0.5
403,666 + LRK55_RS01875 0.87 +1.5
403,666 + LRK55_RS01875 0.87 -0.8
403,666 + LRK55_RS01875 0.87 -0.8
403,666 + LRK55_RS01875 0.87 -0.1
403,666 + LRK55_RS01875 0.87 +0.7
403,666 + LRK55_RS01875 0.87 -1.3
403,666 + LRK55_RS01875 0.87 -0.1
403,666 + LRK55_RS01875 0.87 -1.1
403,666 + LRK55_RS01875 0.87 -0.3
403,666 + LRK55_RS01875 0.87 -0.0
403,666 + LRK55_RS01875 0.87 -1.6
403,666 + LRK55_RS01875 0.87 -1.5
403,667 - LRK55_RS01875 0.87 -0.5
403,667 - LRK55_RS01875 0.87 +1.3
403,667 - LRK55_RS01875 0.87 -0.7
403,667 - LRK55_RS01875 0.87 +0.2
403,667 - LRK55_RS01875 0.87 -0.7
403,667 - LRK55_RS01875 0.87 -1.7
403,667 - LRK55_RS01875 0.87 +1.1
403,667 - LRK55_RS01875 0.87 +0.9
403,667 - LRK55_RS01875 0.87 +0.0
403,667 - LRK55_RS01875 0.87 -0.2
403,667 - LRK55_RS01875 0.87 -2.8
403,667 - LRK55_RS01875 0.87 -0.9
403,667 - LRK55_RS01875 0.87 -1.3
403,963 + -0.0
403,963 + -0.4
403,963 + -2.0
403,963 + +0.1
403,963 + +0.6
403,963 + -1.5
403,963 + +3.6
403,964 - +0.5
403,964 - -1.0
403,964 - -0.0
403,964 - +1.1
403,964 - -0.6
403,964 - -0.1
403,964 - +0.4
404,139 + +0.4
404,139 + -0.4
404,170 + -0.7
404,170 + -1.3
404,225 - -0.9
404,303 + -0.1
404,303 + -2.8
404,303 + -2.8
404,303 + -0.4
404,303 + -0.0
404,303 + -0.2
404,303 + +0.3
404,304 - -0.3
404,304 - -0.7
404,304 - +1.8
404,304 - -0.7
404,304 - +1.3
404,333 + -0.7
404,334 - -1.5
404,334 - +0.9
404,335 - -1.5
404,361 - LRK55_RS01880 0.10 -0.6
404,750 + LRK55_RS01880 0.44 -1.2
404,750 + LRK55_RS01880 0.44 -1.1
404,750 + LRK55_RS01880 0.44 +0.1
404,750 + LRK55_RS01880 0.44 -0.7
404,751 - LRK55_RS01880 0.44 +0.1
404,751 - LRK55_RS01880 0.44 -1.3
404,751 - LRK55_RS01880 0.44 -0.9
404,906 + LRK55_RS01880 0.57 -0.9
404,906 + LRK55_RS01880 0.57 -1.7
404,906 + LRK55_RS01880 0.57 -0.0
404,907 - LRK55_RS01880 0.57 -1.0
404,907 - LRK55_RS01880 0.57 -1.5
404,907 - LRK55_RS01880 0.57 -1.0
404,907 - LRK55_RS01880 0.57 -2.2
404,907 - LRK55_RS01880 0.57 -2.0
405,074 + LRK55_RS01880 0.72 -0.3
405,074 + LRK55_RS01880 0.72 +2.3
405,074 + LRK55_RS01880 0.72 -0.8
405,074 + LRK55_RS01880 0.72 -0.9
405,074 + LRK55_RS01880 0.72 -1.5
405,074 + LRK55_RS01880 0.72 -0.7
405,075 - LRK55_RS01880 0.72 +0.4
405,075 - LRK55_RS01880 0.72 +0.0
405,075 - LRK55_RS01880 0.72 -0.5
405,075 - LRK55_RS01880 0.72 -1.8
405,198 - LRK55_RS01880 0.82 -0.0
405,198 - LRK55_RS01880 0.82 +0.0
405,198 - LRK55_RS01880 0.82 -0.7
405,198 - LRK55_RS01880 0.82 +3.3
405,198 - LRK55_RS01880 0.82 -0.8
405,227 + LRK55_RS01880 0.85 -0.8
405,227 + LRK55_RS01880 0.85 -1.3
405,239 - LRK55_RS01880 0.86 -2.2
405,497 - -0.3
405,503 + -1.0
405,503 + +0.0
405,503 + -1.8
405,504 - +0.3
405,504 - +0.3
405,504 - -1.5
405,513 + -0.5
405,522 - +0.9
405,606 - -0.0
405,656 + LRK55_RS01885 0.13 +0.3
405,656 + LRK55_RS01885 0.13 +0.1
405,656 + LRK55_RS01885 0.13 +0.3
405,656 + LRK55_RS01885 0.13 -0.6
405,656 + LRK55_RS01885 0.13 -0.0
405,657 - LRK55_RS01885 0.13 -1.5
405,657 - LRK55_RS01885 0.13 +1.3
405,657 - LRK55_RS01885 0.13 -1.6
405,657 - LRK55_RS01885 0.13 -0.5
405,657 - LRK55_RS01885 0.13 -0.1
405,739 + LRK55_RS01885 0.22 -1.5
405,740 - LRK55_RS01885 0.22 -0.6
405,740 - LRK55_RS01885 0.22 -0.9
405,740 - LRK55_RS01885 0.22 -0.5
405,742 + LRK55_RS01885 0.22 +0.5
405,742 + LRK55_RS01885 0.22 -0.7
405,743 - LRK55_RS01885 0.22 -0.4
405,917 - LRK55_RS01885 0.41 +0.9
406,198 + LRK55_RS01885 0.71 +0.5
406,199 - LRK55_RS01885 0.71 -1.3
406,382 + -2.2
406,382 + -0.3
406,382 + +0.3
406,383 - -2.9
406,383 - -0.2

Or see this region's nucleotide sequence