Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18410 and LRK55_RS18415 are separated by 147 nucleotides LRK55_RS18415 and LRK55_RS18420 are separated by 243 nucleotides LRK55_RS18420 and LRK55_RS18425 are separated by 76 nucleotides
LRK55_RS18410: LRK55_RS18410 - PRTRC system ThiF family protein, at 15,059 to 15,868
_RS18410
LRK55_RS18415: LRK55_RS18415 - single-stranded DNA-binding protein, at 16,016 to 16,600
_RS18415
LRK55_RS18420: LRK55_RS18420 - DEAD/DEAH box helicase, at 16,844 to 18,841
_RS18420
LRK55_RS18425: LRK55_RS18425 - tetratricopeptide repeat protein, at 18,918 to 19,829
_RS18425
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 15.895 kb on + strand at 15.896 kb on - strand at 15.896 kb on - strand at 15.950 kb on + strand at 15.951 kb on - strand at 15.951 kb on - strand at 15.951 kb on - strand at 15.951 kb on - strand at 16.016 kb on - strand at 16.016 kb on - strand at 16.250 kb on + strand, within LRK55_RS18415 at 16.250 kb on + strand, within LRK55_RS18415 at 16.250 kb on + strand, within LRK55_RS18415 at 16.250 kb on + strand, within LRK55_RS18415 at 16.251 kb on - strand, within LRK55_RS18415 at 16.251 kb on - strand, within LRK55_RS18415 at 16.251 kb on - strand, within LRK55_RS18415 at 16.251 kb on - strand, within LRK55_RS18415 at 16.251 kb on - strand, within LRK55_RS18415 at 16.280 kb on + strand, within LRK55_RS18415 at 16.281 kb on - strand, within LRK55_RS18415 at 16.308 kb on - strand, within LRK55_RS18415 at 16.446 kb on - strand, within LRK55_RS18415 at 16.545 kb on - strand at 16.725 kb on + strand at 16.725 kb on + strand at 16.725 kb on + strand at 16.835 kb on + strand at 16.835 kb on + strand at 16.835 kb on + strand at 16.835 kb on + strand at 16.835 kb on + strand at 16.835 kb on + strand at 16.835 kb on + strand at 16.836 kb on - strand at 16.836 kb on - strand at 16.946 kb on + strand at 16.947 kb on - strand at 17.345 kb on + strand, within LRK55_RS18420 at 17.345 kb on + strand, within LRK55_RS18420 at 17.345 kb on + strand, within LRK55_RS18420 at 17.346 kb on - strand, within LRK55_RS18420 at 17.379 kb on + strand, within LRK55_RS18420 at 17.379 kb on + strand, within LRK55_RS18420 at 17.379 kb on + strand, within LRK55_RS18420 at 17.379 kb on + strand, within LRK55_RS18420 at 17.379 kb on + strand, within LRK55_RS18420 at 17.380 kb on - strand, within LRK55_RS18420 at 17.430 kb on + strand, within LRK55_RS18420 at 17.430 kb on + strand, within LRK55_RS18420 at 17.430 kb on + strand, within LRK55_RS18420 at 17.430 kb on + strand, within LRK55_RS18420 at 17.431 kb on - strand, within LRK55_RS18420 at 17.431 kb on - strand, within LRK55_RS18420 at 17.431 kb on - strand, within LRK55_RS18420 at 17.431 kb on - strand, within LRK55_RS18420 at 17.431 kb on - strand, within LRK55_RS18420 at 17.431 kb on - strand, within LRK55_RS18420 at 17.431 kb on - strand, within LRK55_RS18420 at 17.465 kb on + strand, within LRK55_RS18420 at 17.465 kb on + strand, within LRK55_RS18420 at 17.465 kb on + strand, within LRK55_RS18420 at 17.466 kb on - strand, within LRK55_RS18420 at 17.682 kb on + strand, within LRK55_RS18420 at 17.783 kb on + strand, within LRK55_RS18420 at 17.784 kb on - strand, within LRK55_RS18420 at 17.993 kb on + strand, within LRK55_RS18420 at 17.993 kb on + strand, within LRK55_RS18420 at 17.993 kb on + strand, within LRK55_RS18420 at 17.993 kb on + strand, within LRK55_RS18420 at 17.993 kb on + strand, within LRK55_RS18420 at 17.993 kb on + strand, within LRK55_RS18420 at 17.994 kb on - strand, within LRK55_RS18420 at 17.994 kb on - strand, within LRK55_RS18420 at 18.161 kb on + strand, within LRK55_RS18420 at 18.161 kb on + strand, within LRK55_RS18420 at 18.162 kb on - strand, within LRK55_RS18420 at 18.283 kb on + strand, within LRK55_RS18420 at 18.284 kb on - strand, within LRK55_RS18420 at 18.326 kb on + strand, within LRK55_RS18420 at 18.326 kb on + strand, within LRK55_RS18420 at 18.327 kb on - strand, within LRK55_RS18420 at 18.327 kb on - strand, within LRK55_RS18420 at 18.327 kb on - strand, within LRK55_RS18420 at 18.347 kb on - strand, within LRK55_RS18420 at 18.467 kb on + strand, within LRK55_RS18420 at 18.467 kb on + strand, within LRK55_RS18420 at 18.497 kb on + strand, within LRK55_RS18420 at 18.626 kb on - strand, within LRK55_RS18420 at 18.626 kb on - strand, within LRK55_RS18420 at 18.882 kb on - strand at 18.949 kb on + strand at 18.950 kb on - strand at 18.950 kb on - strand at 18.950 kb on - strand at 18.950 kb on - strand at 18.971 kb on - strand at 19.154 kb on + strand, within LRK55_RS18425 at 19.154 kb on + strand, within LRK55_RS18425 at 19.155 kb on - strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.596 kb on + strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.597 kb on - strand, within LRK55_RS18425 at 19.645 kb on + strand, within LRK55_RS18425 at 19.645 kb on + strand, within LRK55_RS18425 at 19.645 kb on + strand, within LRK55_RS18425 at 19.646 kb on - strand, within LRK55_RS18425 at 19.710 kb on + strand, within LRK55_RS18425 at 19.710 kb on + strand, within LRK55_RS18425 at 19.749 kb on + strand at 19.758 kb on + strand at 19.758 kb on + strand at 19.759 kb on - strand at 19.827 kb on + strand at 19.828 kb on - strand at 19.828 kb on - strand at 19.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 15,895 + +0.7 15,896 - +0.3 15,896 - +0.4 15,950 + -0.6 15,951 - +0.2 15,951 - +0.3 15,951 - -1.5 15,951 - +0.1 16,016 - -0.4 16,016 - -0.9 16,250 + LRK55_RS18415 0.40 +0.4 16,250 + LRK55_RS18415 0.40 -1.0 16,250 + LRK55_RS18415 0.40 -0.2 16,250 + LRK55_RS18415 0.40 -3.0 16,251 - LRK55_RS18415 0.40 -0.2 16,251 - LRK55_RS18415 0.40 +0.3 16,251 - LRK55_RS18415 0.40 -0.0 16,251 - LRK55_RS18415 0.40 +1.2 16,251 - LRK55_RS18415 0.40 +2.4 16,280 + LRK55_RS18415 0.45 -1.6 16,281 - LRK55_RS18415 0.45 +2.4 16,308 - LRK55_RS18415 0.50 +1.9 16,446 - LRK55_RS18415 0.74 -0.2 16,545 - -0.7 16,725 + +0.1 16,725 + +0.1 16,725 + +0.2 16,835 + -0.4 16,835 + +0.7 16,835 + -0.0 16,835 + +0.8 16,835 + -2.5 16,835 + +1.2 16,835 + +1.7 16,836 - -0.7 16,836 - -1.9 16,946 + -0.5 16,947 - +1.7 17,345 + LRK55_RS18420 0.25 +0.5 17,345 + LRK55_RS18420 0.25 +0.4 17,345 + LRK55_RS18420 0.25 +0.2 17,346 - LRK55_RS18420 0.25 +0.7 17,379 + LRK55_RS18420 0.27 -0.5 17,379 + LRK55_RS18420 0.27 +0.8 17,379 + LRK55_RS18420 0.27 -2.0 17,379 + LRK55_RS18420 0.27 -0.1 17,379 + LRK55_RS18420 0.27 +0.0 17,380 - LRK55_RS18420 0.27 +0.5 17,430 + LRK55_RS18420 0.29 +2.2 17,430 + LRK55_RS18420 0.29 +0.3 17,430 + LRK55_RS18420 0.29 -1.0 17,430 + LRK55_RS18420 0.29 +0.7 17,431 - LRK55_RS18420 0.29 -1.0 17,431 - LRK55_RS18420 0.29 -0.5 17,431 - LRK55_RS18420 0.29 +0.1 17,431 - LRK55_RS18420 0.29 +2.3 17,431 - LRK55_RS18420 0.29 +0.3 17,431 - LRK55_RS18420 0.29 -0.4 17,431 - LRK55_RS18420 0.29 +1.2 17,465 + LRK55_RS18420 0.31 -0.1 17,465 + LRK55_RS18420 0.31 +0.0 17,465 + LRK55_RS18420 0.31 +1.6 17,466 - LRK55_RS18420 0.31 +1.7 17,682 + LRK55_RS18420 0.42 -0.4 17,783 + LRK55_RS18420 0.47 +0.2 17,784 - LRK55_RS18420 0.47 -1.6 17,993 + LRK55_RS18420 0.58 +0.2 17,993 + LRK55_RS18420 0.58 +1.0 17,993 + LRK55_RS18420 0.58 +0.1 17,993 + LRK55_RS18420 0.58 +0.6 17,993 + LRK55_RS18420 0.58 +0.4 17,993 + LRK55_RS18420 0.58 -1.6 17,994 - LRK55_RS18420 0.58 +0.4 17,994 - LRK55_RS18420 0.58 -0.2 18,161 + LRK55_RS18420 0.66 +0.0 18,161 + LRK55_RS18420 0.66 -0.1 18,162 - LRK55_RS18420 0.66 -1.3 18,283 + LRK55_RS18420 0.72 -1.2 18,284 - LRK55_RS18420 0.72 -0.0 18,326 + LRK55_RS18420 0.74 +1.3 18,326 + LRK55_RS18420 0.74 +0.1 18,327 - LRK55_RS18420 0.74 +0.4 18,327 - LRK55_RS18420 0.74 +0.1 18,327 - LRK55_RS18420 0.74 +0.3 18,347 - LRK55_RS18420 0.75 -1.1 18,467 + LRK55_RS18420 0.81 +0.3 18,467 + LRK55_RS18420 0.81 +1.3 18,497 + LRK55_RS18420 0.83 +1.9 18,626 - LRK55_RS18420 0.89 +0.6 18,626 - LRK55_RS18420 0.89 -0.3 18,882 - +0.1 18,949 + +1.4 18,950 - +0.6 18,950 - +1.2 18,950 - +0.5 18,950 - -0.5 18,971 - -1.3 19,154 + LRK55_RS18425 0.26 +0.4 19,154 + LRK55_RS18425 0.26 +0.1 19,155 - LRK55_RS18425 0.26 +1.5 19,596 + LRK55_RS18425 0.74 +0.4 19,596 + LRK55_RS18425 0.74 +0.2 19,596 + LRK55_RS18425 0.74 -0.4 19,596 + LRK55_RS18425 0.74 +0.4 19,596 + LRK55_RS18425 0.74 +0.5 19,596 + LRK55_RS18425 0.74 +0.4 19,596 + LRK55_RS18425 0.74 +1.1 19,596 + LRK55_RS18425 0.74 +0.6 19,596 + LRK55_RS18425 0.74 +0.1 19,597 - LRK55_RS18425 0.74 +0.5 19,597 - LRK55_RS18425 0.74 +1.1 19,597 - LRK55_RS18425 0.74 -0.7 19,597 - LRK55_RS18425 0.74 +0.4 19,597 - LRK55_RS18425 0.74 +0.9 19,597 - LRK55_RS18425 0.74 +0.4 19,597 - LRK55_RS18425 0.74 -0.6 19,597 - LRK55_RS18425 0.74 +0.4 19,645 + LRK55_RS18425 0.80 +1.0 19,645 + LRK55_RS18425 0.80 +0.1 19,645 + LRK55_RS18425 0.80 +0.7 19,646 - LRK55_RS18425 0.80 +0.4 19,710 + LRK55_RS18425 0.87 +0.7 19,710 + LRK55_RS18425 0.87 +0.2 19,749 + -0.0 19,758 + +1.0 19,758 + +0.8 19,759 - -0.0 19,827 + -0.0 19,828 - +0.5 19,828 - +1.1 19,828 - -0.2
Or see this region's nucleotide sequence