Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18205

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,949,075	-				-0.6
3,949,075	-				-0.2
3,949,075	-				-0.6
3,949,075	-				-0.3
3,949,075	-				-0.4
3,949,075	-				+1.6
3,949,075	-				-0.6
3,949,079	+				-0.7
3,949,080	-				+0.4
3,949,322	-		LRK55_RS18205	0.11	-2.0
3,949,322	-		LRK55_RS18205	0.11	-3.3
3,949,322	-		LRK55_RS18205	0.11	-1.2
3,949,327	+		LRK55_RS18205	0.11	-2.2
3,949,327	+		LRK55_RS18205	0.11	-2.1
3,949,327	+		LRK55_RS18205	0.11	-4.0
3,949,327	+		LRK55_RS18205	0.11	-2.9
3,949,327	+		LRK55_RS18205	0.11	-0.2
3,949,327	+		LRK55_RS18205	0.11	-3.9
3,949,327	+		LRK55_RS18205	0.11	-0.2
3,949,327	+		LRK55_RS18205	0.11	-1.5
3,949,327	+		LRK55_RS18205	0.11	-3.9
3,949,327	+		LRK55_RS18205	0.11	-2.5
3,949,327	+		LRK55_RS18205	0.11	-4.1
3,949,327	+		LRK55_RS18205	0.11	-2.3
3,949,327	+		LRK55_RS18205	0.11	-1.5
3,949,327	+		LRK55_RS18205	0.11	-1.8
3,949,328	-		LRK55_RS18205	0.11	-2.2
3,949,328	-		LRK55_RS18205	0.11	-1.9
3,949,328	-		LRK55_RS18205	0.11	-3.0
3,949,328	-		LRK55_RS18205	0.11	-2.6
3,949,328	-		LRK55_RS18205	0.11	-2.2
3,949,328	-		LRK55_RS18205	0.11	+0.8
3,949,328	-		LRK55_RS18205	0.11	-0.8
3,949,328	-		LRK55_RS18205	0.11	-2.3
3,949,328	-		LRK55_RS18205	0.11	+1.8
3,949,328	-		LRK55_RS18205	0.11	-3.0
3,949,328	-		LRK55_RS18205	0.11	-3.3
3,949,328	-		LRK55_RS18205	0.11	-1.3
3,949,328	-		LRK55_RS18205	0.11	-0.2
3,949,328	-		LRK55_RS18205	0.11	-3.6
3,949,328	-		LRK55_RS18205	0.11	-2.3
3,949,361	-		LRK55_RS18205	0.13	-3.6
3,949,663	+		LRK55_RS18205	0.31	-1.2
3,949,663	+		LRK55_RS18205	0.31	-1.8
3,949,663	+		LRK55_RS18205	0.31	-1.5
3,949,663	+		LRK55_RS18205	0.31	-2.9
3,949,663	+		LRK55_RS18205	0.31	-2.5
3,949,663	+		LRK55_RS18205	0.31	-0.9
3,949,663	+		LRK55_RS18205	0.31	-3.6
3,949,663	+		LRK55_RS18205	0.31	-2.6
3,949,664	-		LRK55_RS18205	0.31	-3.5
3,949,664	-		LRK55_RS18205	0.31	-2.2
3,949,664	-		LRK55_RS18205	0.31	-4.3
3,949,664	-		LRK55_RS18205	0.31	-0.6
3,949,664	-		LRK55_RS18205	0.31	-3.4
3,949,664	-		LRK55_RS18205	0.31	-3.7
3,949,664	-		LRK55_RS18205	0.31	-3.8
3,949,664	-		LRK55_RS18205	0.31	-2.3
3,949,664	-		LRK55_RS18205	0.31	-1.2
3,949,664	-		LRK55_RS18205	0.31	-2.6
3,949,664	-		LRK55_RS18205	0.31	-3.8
3,949,664	-		LRK55_RS18205	0.31	-2.8
3,949,664	-		LRK55_RS18205	0.31	-1.3
3,949,664	-		LRK55_RS18205	0.31	-1.2
3,949,664	-		LRK55_RS18205	0.31	-0.8
3,949,735	+		LRK55_RS18205	0.35	-3.5
3,949,735	+		LRK55_RS18205	0.35	-3.7
3,949,735	+		LRK55_RS18205	0.35	-3.0
3,949,735	+		LRK55_RS18205	0.35	-2.6
3,949,735	+		LRK55_RS18205	0.35	-1.8
3,949,735	+		LRK55_RS18205	0.35	+0.4
3,949,735	+		LRK55_RS18205	0.35	-2.9
3,949,735	+		LRK55_RS18205	0.35	-3.2
3,949,735	+		LRK55_RS18205	0.35	-2.2
3,949,735	+		LRK55_RS18205	0.35	-2.5
3,949,735	+		LRK55_RS18205	0.35	+1.2
3,949,735	+		LRK55_RS18205	0.35	-0.2
3,949,736	-		LRK55_RS18205	0.35	-3.1
3,949,736	-		LRK55_RS18205	0.35	-2.6
3,949,736	-		LRK55_RS18205	0.35	-2.0
3,949,736	-		LRK55_RS18205	0.35	-3.8
3,949,736	-		LRK55_RS18205	0.35	-0.2
3,949,736	-		LRK55_RS18205	0.35	-0.2
3,949,736	-		LRK55_RS18205	0.35	-2.3
3,949,741	+		LRK55_RS18205	0.36	-1.5
3,949,741	+		LRK55_RS18205	0.36	-2.6
3,949,822	+		LRK55_RS18205	0.41	-3.1
3,949,822	+		LRK55_RS18205	0.41	-1.2
3,949,822	+		LRK55_RS18205	0.41	-2.9
3,949,822	+		LRK55_RS18205	0.41	-2.9
3,949,822	+		LRK55_RS18205	0.41	-2.9
3,949,822	+		LRK55_RS18205	0.41	-1.8
3,949,823	-		LRK55_RS18205	0.41	-2.5
3,949,823	-		LRK55_RS18205	0.41	-2.5
3,949,823	-		LRK55_RS18205	0.41	-0.7
3,949,823	-		LRK55_RS18205	0.41	+0.1
3,949,858	+		LRK55_RS18205	0.43	-1.2
3,949,858	+		LRK55_RS18205	0.43	-2.0
3,949,859	-		LRK55_RS18205	0.43	-2.0
3,949,859	-		LRK55_RS18205	0.43	-0.8
3,949,859	-		LRK55_RS18205	0.43	-4.2
3,949,859	-		LRK55_RS18205	0.43	-2.8
3,949,859	-		LRK55_RS18205	0.43	-2.9
3,949,859	-		LRK55_RS18205	0.43	-2.6
3,949,859	-		LRK55_RS18205	0.43	-1.8
3,949,915	+		LRK55_RS18205	0.46	-2.0
3,949,915	+		LRK55_RS18205	0.46	-2.9
3,949,916	-		LRK55_RS18205	0.46	-2.6
3,949,916	-		LRK55_RS18205	0.46	-3.5
3,949,916	-		LRK55_RS18205	0.46	-1.8
3,950,118	+		LRK55_RS18205	0.58	-1.5
3,950,119	-		LRK55_RS18205	0.58	-1.8
3,950,125	+		LRK55_RS18205	0.59	-2.2
3,950,154	+		LRK55_RS18205	0.60	-1.5
3,950,154	+		LRK55_RS18205	0.60	+0.2
3,950,154	+		LRK55_RS18205	0.60	-3.0
3,950,154	+		LRK55_RS18205	0.60	-4.3
3,950,154	+		LRK55_RS18205	0.60	-3.7
3,950,154	+		LRK55_RS18205	0.60	-1.5
3,950,154	+		LRK55_RS18205	0.60	-1.8
3,950,154	+		LRK55_RS18205	0.60	-1.2
3,950,155	-		LRK55_RS18205	0.60	-2.2
3,950,155	-		LRK55_RS18205	0.60	-1.8
3,950,155	-		LRK55_RS18205	0.60	-1.8
3,950,155	-		LRK55_RS18205	0.60	-2.6
3,950,155	-		LRK55_RS18205	0.60	-1.3
3,950,155	-		LRK55_RS18205	0.60	-1.8
3,950,155	-		LRK55_RS18205	0.60	-3.9
3,950,155	-		LRK55_RS18205	0.60	-2.5
3,950,218	+		LRK55_RS18205	0.64	-3.3
3,950,219	-		LRK55_RS18205	0.64	+0.8
3,950,219	-		LRK55_RS18205	0.64	-1.2
3,950,220	-		LRK55_RS18205	0.64	-3.0
3,950,239	+		LRK55_RS18205	0.66	-2.2
3,950,239	+		LRK55_RS18205	0.66	-2.2
3,950,239	+		LRK55_RS18205	0.66	-2.5
3,950,240	-		LRK55_RS18205	0.66	-0.2
3,950,242	+		LRK55_RS18205	0.66	-1.2
3,950,272	+		LRK55_RS18205	0.68	-1.5
3,950,272	+		LRK55_RS18205	0.68	-2.0
3,950,272	+		LRK55_RS18205	0.68	-4.5
3,950,310	+		LRK55_RS18205	0.70	-0.2
3,950,311	-		LRK55_RS18205	0.70	-3.9
3,950,311	-		LRK55_RS18205	0.70	-3.0
3,950,311	-		LRK55_RS18205	0.70	-2.6
3,950,374	+		LRK55_RS18205	0.74	-4.4
3,950,374	+		LRK55_RS18205	0.74	-0.5
3,950,374	+		LRK55_RS18205	0.74	+0.8
3,950,374	+		LRK55_RS18205	0.74	-3.4
3,950,374	+		LRK55_RS18205	0.74	-0.8
3,950,374	+		LRK55_RS18205	0.74	-1.5
3,950,374	+		LRK55_RS18205	0.74	-2.7
3,950,375	-		LRK55_RS18205	0.74	-2.0
3,950,375	-		LRK55_RS18205	0.74	-3.4
3,950,375	-		LRK55_RS18205	0.74	-0.0
3,950,375	-		LRK55_RS18205	0.74	-1.8
3,950,413	+		LRK55_RS18205	0.76	-2.0
3,950,413	+		LRK55_RS18205	0.76	-2.0
3,950,413	+		LRK55_RS18205	0.76	-3.2
3,950,494	+		LRK55_RS18205	0.81	-1.5
3,950,495	-		LRK55_RS18205	0.81	-1.3
3,950,495	-		LRK55_RS18205	0.81	-3.8
3,950,539	+		LRK55_RS18205	0.84	-0.2
3,950,539	+		LRK55_RS18205	0.84	+0.2
3,950,540	-		LRK55_RS18205	0.84	-3.0
3,950,540	-		LRK55_RS18205	0.84	-1.5
3,950,540	-		LRK55_RS18205	0.84	-1.5
3,950,572	+		LRK55_RS18205	0.85	-3.0
3,950,572	+		LRK55_RS18205	0.85	-3.6
3,950,572	+		LRK55_RS18205	0.85	-1.8
3,950,572	+		LRK55_RS18205	0.85	-0.2
3,950,572	+		LRK55_RS18205	0.85	-0.9
3,950,572	+		LRK55_RS18205	0.85	-2.2
3,950,572	+		LRK55_RS18205	0.85	-1.2
3,950,572	+		LRK55_RS18205	0.85	-0.2
3,950,572	+		LRK55_RS18205	0.85	-3.1
3,950,572	+		LRK55_RS18205	0.85	-1.8
3,950,573	-		LRK55_RS18205	0.86	-2.0
3,950,573	-		LRK55_RS18205	0.86	-3.3
3,950,573	-		LRK55_RS18205	0.86	-3.1
3,950,573	-		LRK55_RS18205	0.86	-3.2
3,950,573	-		LRK55_RS18205	0.86	-3.7
3,950,573	-		LRK55_RS18205	0.86	-3.3
3,950,573	-		LRK55_RS18205	0.86	-2.5
3,950,573	-		LRK55_RS18205	0.86	-2.2
3,950,986	+				-2.6
3,950,986	+				-1.2
3,950,987	-				-0.3
3,950,987	-				-0.2
3,951,029	+				-2.6
3,951,029	+				+1.8
3,951,029	+				-2.3
3,951,029	+				-3.1
3,951,029	+				-2.5
3,951,030	-				-1.3
3,951,030	-				+0.5
3,951,030	-				+0.2
3,951,030	-				+0.2
3,951,051	+				-1.8
3,951,051	+				-1.8
3,951,051	+				-2.0
3,951,051	+				-1.4
3,951,052	-				-1.5
3,951,052	-				+1.2
3,951,052	-				-1.0
3,951,052	-				-0.7
3,951,052	-				-0.9
3,951,167	-				+0.5
3,951,167	-				+0.3
3,951,167	-				-1.5
3,951,262	+				-0.5
3,951,262	+				-0.8
3,951,262	+				-0.1
3,951,262	+				+0.1
3,951,262	+				-0.1
3,951,263	-				-0.2
3,951,263	-				+0.3
3,951,500	+		LRK55_RS18210	0.61	-0.4
3,951,500	+		LRK55_RS18210	0.61	+1.2
3,951,500	+		LRK55_RS18210	0.61	-1.2
3,951,500	+		LRK55_RS18210	0.61	-1.5
3,951,500	+		LRK55_RS18210	0.61	-0.8
3,951,500	+		LRK55_RS18210	0.61	+0.8
3,951,500	+		LRK55_RS18210	0.61	-0.5
3,951,500	+		LRK55_RS18210	0.61	+0.4
3,951,500	+		LRK55_RS18210	0.61	-0.1
3,951,500	+		LRK55_RS18210	0.61	+1.3
3,951,500	+		LRK55_RS18210	0.61	-1.2
3,951,500	+		LRK55_RS18210	0.61	-0.7
3,951,500	+		LRK55_RS18210	0.61	+2.6
3,951,500	+		LRK55_RS18210	0.61	-1.4
3,951,500	+		LRK55_RS18210	0.61	-0.1
3,951,500	+		LRK55_RS18210	0.61	-1.4
3,951,500	+		LRK55_RS18210	0.61	-0.2
3,951,500	+		LRK55_RS18210	0.61	+0.6
3,951,500	+		LRK55_RS18210	0.61	+0.1
3,951,500	+		LRK55_RS18210	0.61	+0.1
3,951,500	+		LRK55_RS18210	0.61	-0.2
3,951,500	+		LRK55_RS18210	0.61	-0.7
3,951,500	+		LRK55_RS18210	0.61	-1.3
3,951,500	+		LRK55_RS18210	0.61	-0.2
3,951,500	+		LRK55_RS18210	0.61	-0.4
3,951,500	+		LRK55_RS18210	0.61	+1.8
3,951,500	+		LRK55_RS18210	0.61	-1.5
3,951,500	+		LRK55_RS18210	0.61	-0.8
3,951,500	+		LRK55_RS18210	0.61	-0.5
3,951,500	+		LRK55_RS18210	0.61	-0.5
3,951,501	-		LRK55_RS18210	0.61	-0.5
3,951,501	-		LRK55_RS18210	0.61	-3.0
3,951,501	-		LRK55_RS18210	0.61	-0.7
3,951,501	-		LRK55_RS18210	0.61	+0.7
3,951,501	-		LRK55_RS18210	0.61	-0.2
3,951,501	-		LRK55_RS18210	0.61	+0.3
3,951,501	-		LRK55_RS18210	0.61	-0.0
3,951,501	-		LRK55_RS18210	0.61	+0.6
3,951,501	-		LRK55_RS18210	0.61	+1.2
3,951,501	-		LRK55_RS18210	0.61	-0.8
3,951,501	-		LRK55_RS18210	0.61	+0.2
3,951,501	-		LRK55_RS18210	0.61	-0.4
3,951,501	-		LRK55_RS18210	0.61	+0.3
3,951,501	-		LRK55_RS18210	0.61	-0.9
3,951,501	-		LRK55_RS18210	0.61	-2.0
3,951,501	-		LRK55_RS18210	0.61	+0.3
3,951,501	-		LRK55_RS18210	0.61	-0.7
3,951,501	-		LRK55_RS18210	0.61	+0.1
3,951,501	-		LRK55_RS18210	0.61	-0.6
3,951,501	-		LRK55_RS18210	0.61	+1.1
3,951,501	-		LRK55_RS18210	0.61	-0.1
3,951,501	-		LRK55_RS18210	0.61	+1.3
3,951,501	-		LRK55_RS18210	0.61	-2.0
3,951,566	+		LRK55_RS18210	0.79	-0.6
3,951,566	+		LRK55_RS18210	0.79	+0.2
3,951,566	+		LRK55_RS18210	0.79	+0.1
3,951,566	+		LRK55_RS18210	0.79	+0.4
3,951,567	-		LRK55_RS18210	0.79	-0.9
3,951,567	-		LRK55_RS18210	0.79	-1.0
3,951,567	-		LRK55_RS18210	0.79	-2.3
3,951,609	+				+0.8
3,951,609	+				+0.6
3,951,610	-				+1.8
3,951,783	+				+0.2
3,951,783	+				-1.2
3,951,783	+				+0.0
3,951,783	+				-0.5
3,951,784	-				+2.2