Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16680

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,622,555	+				+0.4
3,622,555	+				-0.8
3,622,555	+				-0.3
3,622,555	+				+0.2
3,622,555	+				-1.2
3,622,555	+				+0.1
3,622,556	-				+0.6
3,622,556	-				+0.1
3,622,635	+				+0.8
3,622,635	+				-0.4
3,622,635	+				-0.4
3,622,635	+				+0.3
3,622,635	+				-0.5
3,622,636	-				+1.9
3,622,647	+				+1.0
3,622,647	+				-0.3
3,622,647	+				-1.4
3,622,647	+				-0.7
3,622,647	+				+1.3
3,622,647	+				-0.7
3,622,647	+				-0.4
3,622,648	-				-1.0
3,622,648	-				-1.2
3,622,648	-				+0.1
3,622,648	-				-1.5
3,622,720	+		LRK55_RS16680	0.19	+0.8
3,622,720	+		LRK55_RS16680	0.19	-1.0
3,622,720	+		LRK55_RS16680	0.19	-2.4
3,622,720	+		LRK55_RS16680	0.19	-0.8
3,622,720	+		LRK55_RS16680	0.19	-0.4
3,622,720	+		LRK55_RS16680	0.19	-0.1
3,622,720	+		LRK55_RS16680	0.19	+0.3
3,622,720	+		LRK55_RS16680	0.19	+0.2
3,622,720	+		LRK55_RS16680	0.19	+1.1
3,622,720	+		LRK55_RS16680	0.19	+0.1
3,622,720	+		LRK55_RS16680	0.19	+0.8
3,622,720	+		LRK55_RS16680	0.19	-0.2
3,622,720	+		LRK55_RS16680	0.19	-0.2
3,622,720	+		LRK55_RS16680	0.19	+0.0
3,622,720	+		LRK55_RS16680	0.19	+0.1
3,622,720	+		LRK55_RS16680	0.19	+1.0
3,622,721	-		LRK55_RS16680	0.19	+0.5
3,622,721	-		LRK55_RS16680	0.19	-1.9
3,622,721	-		LRK55_RS16680	0.19	-0.3
3,622,721	-		LRK55_RS16680	0.19	+0.2
3,622,721	-		LRK55_RS16680	0.19	+0.4
3,622,721	-		LRK55_RS16680	0.19	-1.4
3,622,721	-		LRK55_RS16680	0.19	+0.4
3,622,721	-		LRK55_RS16680	0.19	-1.5
3,622,721	-		LRK55_RS16680	0.19	+0.2
3,622,721	-		LRK55_RS16680	0.19	+0.7
3,622,721	-		LRK55_RS16680	0.19	-1.2
3,622,721	-		LRK55_RS16680	0.19	+0.2
3,622,721	-		LRK55_RS16680	0.19	+0.8
3,622,721	-		LRK55_RS16680	0.19	-0.0
3,622,721	-		LRK55_RS16680	0.19	-2.2
3,622,721	-		LRK55_RS16680	0.19	+0.2
3,622,721	-		LRK55_RS16680	0.19	-0.2
3,622,721	-		LRK55_RS16680	0.19	-0.5
3,622,721	-		LRK55_RS16680	0.19	-0.2
3,622,722	+		LRK55_RS16680	0.19	-1.3
3,622,722	+		LRK55_RS16680	0.19	+0.2
3,622,722	+		LRK55_RS16680	0.19	+0.3
3,622,722	+		LRK55_RS16680	0.19	-1.6
3,622,722	+		LRK55_RS16680	0.19	-1.5
3,622,722	+		LRK55_RS16680	0.19	+2.1
3,622,722	+		LRK55_RS16680	0.19	+0.3
3,622,722	+		LRK55_RS16680	0.19	+0.4
3,622,722	+		LRK55_RS16680	0.19	+1.0
3,622,722	+		LRK55_RS16680	0.19	-0.2
3,622,722	+		LRK55_RS16680	0.19	-0.2
3,622,723	-		LRK55_RS16680	0.20	-1.2
3,622,723	-		LRK55_RS16680	0.20	-0.1
3,622,723	-		LRK55_RS16680	0.20	-0.3
3,622,723	-		LRK55_RS16680	0.20	+0.4
3,622,723	-		LRK55_RS16680	0.20	-0.0
3,622,723	-		LRK55_RS16680	0.20	-2.3
3,622,723	-		LRK55_RS16680	0.20	-0.5
3,622,748	-		LRK55_RS16680	0.26	-0.5
3,622,748	-		LRK55_RS16680	0.26	-0.6
3,622,756	+		LRK55_RS16680	0.28	+1.0
3,622,756	+		LRK55_RS16680	0.28	+0.4
3,622,756	+		LRK55_RS16680	0.28	+1.2
3,622,756	+		LRK55_RS16680	0.28	-0.3
3,622,756	+		LRK55_RS16680	0.28	+0.1
3,622,756	+		LRK55_RS16680	0.28	+0.5
3,622,756	+		LRK55_RS16680	0.28	+0.4
3,622,756	+		LRK55_RS16680	0.28	-1.1
3,622,756	+		LRK55_RS16680	0.28	-0.1
3,622,756	+		LRK55_RS16680	0.28	+0.1
3,622,756	+		LRK55_RS16680	0.28	-0.8
3,622,756	+		LRK55_RS16680	0.28	-0.6
3,622,756	+		LRK55_RS16680	0.28	+1.0
3,622,756	+		LRK55_RS16680	0.28	+0.2
3,622,756	+		LRK55_RS16680	0.28	+0.5
3,622,756	+		LRK55_RS16680	0.28	-1.0
3,622,756	+		LRK55_RS16680	0.28	+0.6
3,622,756	+		LRK55_RS16680	0.28	-0.2
3,622,756	+		LRK55_RS16680	0.28	-0.4
3,622,756	+		LRK55_RS16680	0.28	+0.0
3,622,757	-		LRK55_RS16680	0.28	-0.1
3,622,757	-		LRK55_RS16680	0.28	-0.5
3,622,757	-		LRK55_RS16680	0.28	-0.0
3,622,757	-		LRK55_RS16680	0.28	+1.1
3,622,757	-		LRK55_RS16680	0.28	+0.6
3,622,757	-		LRK55_RS16680	0.28	-0.3
3,622,757	-		LRK55_RS16680	0.28	+0.4
3,622,757	-		LRK55_RS16680	0.28	-0.1
3,622,757	-		LRK55_RS16680	0.28	+0.1
3,622,757	-		LRK55_RS16680	0.28	+0.1
3,622,757	-		LRK55_RS16680	0.28	+1.0
3,622,757	-		LRK55_RS16680	0.28	-0.3
3,622,757	-		LRK55_RS16680	0.28	-1.2
3,622,757	-		LRK55_RS16680	0.28	-0.8
3,622,757	-		LRK55_RS16680	0.28	+1.4
3,622,757	-		LRK55_RS16680	0.28	+0.2
3,622,757	-		LRK55_RS16680	0.28	-0.1
3,622,757	-		LRK55_RS16680	0.28	+0.1
3,622,757	-		LRK55_RS16680	0.28	+1.5
3,622,757	-		LRK55_RS16680	0.28	+2.4
3,622,758	+		LRK55_RS16680	0.29	-0.3
3,622,758	+		LRK55_RS16680	0.29	-1.0
3,622,758	+		LRK55_RS16680	0.29	-1.5
3,622,758	+		LRK55_RS16680	0.29	-0.1
3,622,758	+		LRK55_RS16680	0.29	-0.2
3,622,758	+		LRK55_RS16680	0.29	-1.0
3,622,758	+		LRK55_RS16680	0.29	+1.1
3,622,758	+		LRK55_RS16680	0.29	+1.2
3,622,758	+		LRK55_RS16680	0.29	-2.0
3,622,758	+		LRK55_RS16680	0.29	+0.3
3,622,758	+		LRK55_RS16680	0.29	+1.6
3,622,758	+		LRK55_RS16680	0.29	+1.1
3,622,758	+		LRK55_RS16680	0.29	+0.0
3,622,758	+		LRK55_RS16680	0.29	-1.9
3,622,758	+		LRK55_RS16680	0.29	+0.2
3,622,758	+		LRK55_RS16680	0.29	-0.1
3,622,758	+		LRK55_RS16680	0.29	-1.1
3,622,759	-		LRK55_RS16680	0.29	-0.2
3,622,759	-		LRK55_RS16680	0.29	+0.7
3,622,759	-		LRK55_RS16680	0.29	-2.8
3,622,759	-		LRK55_RS16680	0.29	-0.1
3,622,759	-		LRK55_RS16680	0.29	+0.2
3,622,759	-		LRK55_RS16680	0.29	-1.4
3,622,759	-		LRK55_RS16680	0.29	-0.8
3,622,824	+		LRK55_RS16680	0.46	-0.5
3,622,824	+		LRK55_RS16680	0.46	-0.5
3,622,861	+		LRK55_RS16680	0.55	-0.1
3,622,861	+		LRK55_RS16680	0.55	+0.3
3,622,861	+		LRK55_RS16680	0.55	+0.2
3,622,861	+		LRK55_RS16680	0.55	+0.9
3,622,862	-		LRK55_RS16680	0.56	+0.8
3,622,862	-		LRK55_RS16680	0.56	+0.6
3,622,862	-		LRK55_RS16680	0.56	-0.4
3,622,862	-		LRK55_RS16680	0.56	-0.5
3,622,862	-		LRK55_RS16680	0.56	-0.3
3,622,862	-		LRK55_RS16680	0.56	+0.3
3,622,862	-		LRK55_RS16680	0.56	-1.9
3,622,862	-		LRK55_RS16680	0.56	-1.2
3,622,943	-		LRK55_RS16680	0.77	-0.1
3,622,943	-		LRK55_RS16680	0.77	+1.1
3,622,943	-		LRK55_RS16680	0.77	-0.7
3,622,966	+		LRK55_RS16680	0.83	+0.1
3,622,966	+		LRK55_RS16680	0.83	+0.1
3,622,966	+		LRK55_RS16680	0.83	+0.1
3,622,966	+		LRK55_RS16680	0.83	-0.1
3,622,966	+		LRK55_RS16680	0.83	+0.1
3,622,966	+		LRK55_RS16680	0.83	-0.4
3,622,966	+		LRK55_RS16680	0.83	-0.6
3,622,966	+		LRK55_RS16680	0.83	-0.2
3,622,966	+		LRK55_RS16680	0.83	-1.0
3,622,966	+		LRK55_RS16680	0.83	-0.3
3,622,966	+		LRK55_RS16680	0.83	-0.4
3,622,966	+		LRK55_RS16680	0.83	+0.5
3,622,966	+		LRK55_RS16680	0.83	+0.5
3,622,967	-		LRK55_RS16680	0.83	-0.7
3,622,967	-		LRK55_RS16680	0.83	+1.0
3,622,967	-		LRK55_RS16680	0.83	+2.1
3,622,967	-		LRK55_RS16680	0.83	-1.4
3,622,967	-		LRK55_RS16680	0.83	+0.1
3,622,967	-		LRK55_RS16680	0.83	-1.6
3,622,967	-		LRK55_RS16680	0.83	+0.7
3,622,967	-		LRK55_RS16680	0.83	-2.2
3,622,967	-		LRK55_RS16680	0.83	+0.5
3,622,967	-		LRK55_RS16680	0.83	+0.3
3,622,967	-		LRK55_RS16680	0.83	-2.0
3,622,967	-		LRK55_RS16680	0.83	+0.8
3,622,967	-		LRK55_RS16680	0.83	+0.3
3,623,030	-				-1.2
3,623,030	-				+1.5
3,623,046	+				-2.2
3,623,046	+				-0.2
3,623,047	-				-1.8
3,623,047	-				-0.0
3,623,047	-				+1.4
3,623,172	+		LRK55_RS16685	0.21	-2.8
3,623,172	+		LRK55_RS16685	0.21	+0.6
3,623,173	-		LRK55_RS16685	0.21	-0.5
3,623,173	-		LRK55_RS16685	0.21	-2.2
3,623,173	-		LRK55_RS16685	0.21	-2.0
3,623,373	+		LRK55_RS16685	0.51	-0.8
3,623,373	+		LRK55_RS16685	0.51	-2.7
3,623,374	-		LRK55_RS16685	0.52	-1.2
3,623,374	-		LRK55_RS16685	0.52	-1.2
3,623,374	-		LRK55_RS16685	0.52	-0.7
3,623,374	-		LRK55_RS16685	0.52	-1.8
3,623,517	+		LRK55_RS16685	0.73	-0.1
3,623,518	-		LRK55_RS16685	0.73	-1.5
3,623,745	+				+0.2
3,623,745	+				+0.3
3,623,745	+				-0.4
3,623,745	+				-0.6
3,623,745	+				-2.2
3,623,745	+				-0.2
3,623,745	+				-1.0
3,623,745	+				-0.4
3,623,745	+				-0.0
3,623,745	+				+0.5
3,623,745	+				+0.2
3,623,745	+				-2.2
3,623,745	+				-0.1
3,623,745	+				-0.3
3,623,745	+				+0.4
3,623,745	+				+0.8
3,623,745	+				+1.2
3,623,746	-				+0.2
3,623,746	-				-1.8
3,623,746	-				-0.1
3,623,746	-				+0.3
3,623,746	-				+0.2
3,623,746	-				-0.6
3,623,746	-				+0.2
3,623,746	-				+0.1
3,623,746	-				+0.6
3,623,746	-				+1.3
3,623,746	-				+0.8
3,623,746	-				+0.4