Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS11490

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
2,531,784	+				-0.0
2,531,784	+				+0.4
2,531,784	+				+0.3
2,531,784	+				+2.3
2,531,871	+				-0.8
2,531,871	+				+1.3
2,531,872	-				-1.7
2,531,888	+				+0.2
2,531,889	-				-1.1
2,532,084	+		LRK55_RS11485	0.19	-1.8
2,532,084	+		LRK55_RS11485	0.19	-1.6
2,532,115	+		LRK55_RS11485	0.23	-0.3
2,532,115	+		LRK55_RS11485	0.23	-2.0
2,532,115	+		LRK55_RS11485	0.23	-0.0
2,532,115	+		LRK55_RS11485	0.23	-0.6
2,532,115	+		LRK55_RS11485	0.23	-2.1
2,532,115	+		LRK55_RS11485	0.23	-0.8
2,532,115	+		LRK55_RS11485	0.23	+0.1
2,532,115	+		LRK55_RS11485	0.23	-2.2
2,532,115	+		LRK55_RS11485	0.23	+1.2
2,532,115	+		LRK55_RS11485	0.23	+0.4
2,532,115	+		LRK55_RS11485	0.23	+0.2
2,532,115	+		LRK55_RS11485	0.23	-0.8
2,532,116	-		LRK55_RS11485	0.23	-0.3
2,532,116	-		LRK55_RS11485	0.23	-0.9
2,532,116	-		LRK55_RS11485	0.23	-1.3
2,532,116	-		LRK55_RS11485	0.23	+2.3
2,532,116	-		LRK55_RS11485	0.23	-0.6
2,532,116	-		LRK55_RS11485	0.23	-0.8
2,532,116	-		LRK55_RS11485	0.23	-3.9
2,532,181	+		LRK55_RS11485	0.31	-0.5
2,532,181	+		LRK55_RS11485	0.31	+1.5
2,532,181	+		LRK55_RS11485	0.31	-2.3
2,532,182	-		LRK55_RS11485	0.31	+0.3
2,532,182	-		LRK55_RS11485	0.31	+0.6
2,532,182	-		LRK55_RS11485	0.31	-2.0
2,532,182	-		LRK55_RS11485	0.31	+0.7
2,532,182	-		LRK55_RS11485	0.31	-2.3
2,532,182	-		LRK55_RS11485	0.31	-0.6
2,532,182	-		LRK55_RS11485	0.31	-0.2
2,532,182	-		LRK55_RS11485	0.31	+0.0
2,532,182	-		LRK55_RS11485	0.31	-1.3
2,532,182	-		LRK55_RS11485	0.31	+1.2
2,532,182	-		LRK55_RS11485	0.31	-1.5
2,532,205	+		LRK55_RS11485	0.34	-0.2
2,532,206	-		LRK55_RS11485	0.34	-0.8
2,532,206	-		LRK55_RS11485	0.34	-0.4
2,532,442	+		LRK55_RS11485	0.62	+0.3
2,532,442	+		LRK55_RS11485	0.62	-2.3
2,532,721	+				+0.6
2,532,721	+				-0.5
2,532,721	+				-0.7
2,532,721	+				+0.8
2,532,721	+				+1.2
2,532,722	-				+0.1
2,532,975	+		LRK55_RS11490	0.28	-3.7
2,532,975	+		LRK55_RS11490	0.28	-0.7
2,532,976	-		LRK55_RS11490	0.28	+0.7
2,532,976	-		LRK55_RS11490	0.28	-0.8
2,533,038	+		LRK55_RS11490	0.36	-0.8
2,533,038	+		LRK55_RS11490	0.36	+0.7
2,533,039	-		LRK55_RS11490	0.36	-0.8
2,533,176	+		LRK55_RS11490	0.54	-0.4
2,533,176	+		LRK55_RS11490	0.54	-0.4
2,533,177	-		LRK55_RS11490	0.54	-3.5
2,533,177	-		LRK55_RS11490	0.54	-0.6
2,533,177	-		LRK55_RS11490	0.54	-0.0
2,533,234	+		LRK55_RS11490	0.62	-1.0
2,533,234	+		LRK55_RS11490	0.62	-1.1
2,533,234	+		LRK55_RS11490	0.62	-0.8
2,533,234	+		LRK55_RS11490	0.62	+0.4
2,533,234	+		LRK55_RS11490	0.62	-1.8
2,533,235	-		LRK55_RS11490	0.62	-0.9
2,533,452	+		LRK55_RS11490	0.90	-2.4
2,533,452	+		LRK55_RS11490	0.90	-0.3
2,533,453	-		LRK55_RS11490	0.90	-0.4
2,533,453	-		LRK55_RS11490	0.90	-2.1
2,533,453	-		LRK55_RS11490	0.90	-2.1
2,533,453	-		LRK55_RS11490	0.90	-0.3
2,533,588	+				-0.5
2,533,589	-				-1.3
2,533,589	-				+0.2
2,533,640	-				-1.6
2,533,640	-				-0.5
2,533,640	-				-0.4
2,533,690	+		LRK55_RS11495	0.14	-2.0
2,533,690	+		LRK55_RS11495	0.14	+0.6
2,533,690	+		LRK55_RS11495	0.14	-0.8
2,533,690	+		LRK55_RS11495	0.14	-0.5
2,533,690	+		LRK55_RS11495	0.14	+0.9
2,533,690	+		LRK55_RS11495	0.14	-0.0
2,533,690	+		LRK55_RS11495	0.14	-0.5
2,533,690	+		LRK55_RS11495	0.14	+0.2
2,533,690	+		LRK55_RS11495	0.14	-1.1
2,533,690	+		LRK55_RS11495	0.14	+0.3
2,533,691	-		LRK55_RS11495	0.15	+0.3
2,533,691	-		LRK55_RS11495	0.15	+0.7
2,533,691	-		LRK55_RS11495	0.15	-0.6
2,533,691	-		LRK55_RS11495	0.15	+0.7
2,533,691	-		LRK55_RS11495	0.15	+0.0
2,533,691	-		LRK55_RS11495	0.15	+0.2
2,533,691	-		LRK55_RS11495	0.15	-1.5
2,533,691	-		LRK55_RS11495	0.15	-1.8
2,533,691	-		LRK55_RS11495	0.15	-0.4
2,533,691	-		LRK55_RS11495	0.15	-1.1
2,533,691	-		LRK55_RS11495	0.15	-0.1
2,533,691	-		LRK55_RS11495	0.15	-0.1
2,533,691	-		LRK55_RS11495	0.15	-2.7
2,533,691	-		LRK55_RS11495	0.15	-0.6
2,533,691	-		LRK55_RS11495	0.15	-2.1
2,533,840	+		LRK55_RS11495	0.32	+0.7
2,533,840	+		LRK55_RS11495	0.32	+0.2
2,533,840	+		LRK55_RS11495	0.32	-0.3
2,533,840	+		LRK55_RS11495	0.32	+1.4
2,533,840	+		LRK55_RS11495	0.32	-0.2
2,533,840	+		LRK55_RS11495	0.32	-1.1
2,533,840	+		LRK55_RS11495	0.32	-0.5
2,533,840	+		LRK55_RS11495	0.32	-0.7
2,533,840	+		LRK55_RS11495	0.32	+0.4
2,533,840	+		LRK55_RS11495	0.32	-1.3
2,533,841	-		LRK55_RS11495	0.32	+0.7
2,533,841	-		LRK55_RS11495	0.32	-1.3
2,533,841	-		LRK55_RS11495	0.32	+0.6
2,533,841	-		LRK55_RS11495	0.32	-1.2
2,533,841	-		LRK55_RS11495	0.32	-1.5
2,533,841	-		LRK55_RS11495	0.32	-1.3
2,533,841	-		LRK55_RS11495	0.32	-0.1
2,533,841	-		LRK55_RS11495	0.32	-0.8
2,533,841	-		LRK55_RS11495	0.32	-0.2
2,533,903	+		LRK55_RS11495	0.39	-1.6
2,533,903	+		LRK55_RS11495	0.39	-0.5
2,533,903	+		LRK55_RS11495	0.39	-0.8
2,533,903	+		LRK55_RS11495	0.39	-0.7
2,533,903	+		LRK55_RS11495	0.39	+2.3
2,533,903	+		LRK55_RS11495	0.39	-1.4
2,533,903	+		LRK55_RS11495	0.39	-2.4
2,533,904	-		LRK55_RS11495	0.40	-1.3
2,533,904	-		LRK55_RS11495	0.40	-2.3
2,533,904	-		LRK55_RS11495	0.40	-2.7
2,533,904	-		LRK55_RS11495	0.40	-0.6
2,533,904	-		LRK55_RS11495	0.40	-0.5
2,533,904	-		LRK55_RS11495	0.40	-1.8
2,533,904	-		LRK55_RS11495	0.40	-0.8
2,533,904	-		LRK55_RS11495	0.40	-1.0
2,533,904	-		LRK55_RS11495	0.40	-1.4
2,533,918	+		LRK55_RS11495	0.41	-0.3
2,533,918	+		LRK55_RS11495	0.41	+0.4
2,533,918	+		LRK55_RS11495	0.41	-0.4
2,533,919	-		LRK55_RS11495	0.41	+0.1
2,533,919	-		LRK55_RS11495	0.41	+1.0
2,533,919	-		LRK55_RS11495	0.41	-0.8
2,534,047	+		LRK55_RS11495	0.56	+0.4
2,534,047	+		LRK55_RS11495	0.56	-1.2
2,534,047	+		LRK55_RS11495	0.56	+0.2
2,534,047	+		LRK55_RS11495	0.56	-0.6
2,534,048	-		LRK55_RS11495	0.56	-0.9
2,534,048	-		LRK55_RS11495	0.56	+0.5
2,534,048	-		LRK55_RS11495	0.56	-1.5
2,534,048	-		LRK55_RS11495	0.56	-0.3
2,534,048	-		LRK55_RS11495	0.56	-1.0
2,534,048	-		LRK55_RS11495	0.56	-1.2
2,534,048	-		LRK55_RS11495	0.56	-0.7
2,534,048	-		LRK55_RS11495	0.56	-0.7
2,534,048	-		LRK55_RS11495	0.56	+0.9
2,534,048	-		LRK55_RS11495	0.56	-1.3
2,534,048	-		LRK55_RS11495	0.56	-1.3
2,534,197	+		LRK55_RS11495	0.74	-0.2
2,534,198	-		LRK55_RS11495	0.74	+0.3
2,534,198	-		LRK55_RS11495	0.74	-0.6
2,534,198	-		LRK55_RS11495	0.74	-1.2
2,534,260	+		LRK55_RS11495	0.81	-2.2
2,534,260	+		LRK55_RS11495	0.81	+0.2
2,534,260	+		LRK55_RS11495	0.81	+0.2
2,534,260	+		LRK55_RS11495	0.81	-0.4
2,534,260	+		LRK55_RS11495	0.81	+0.1
2,534,260	+		LRK55_RS11495	0.81	-0.5
2,534,260	+		LRK55_RS11495	0.81	-0.6
2,534,260	+		LRK55_RS11495	0.81	+0.9
2,534,260	+		LRK55_RS11495	0.81	-0.7
2,534,260	+		LRK55_RS11495	0.81	-0.5
2,534,260	+		LRK55_RS11495	0.81	-0.8
2,534,260	+		LRK55_RS11495	0.81	+0.7
2,534,261	-		LRK55_RS11495	0.81	+0.2
2,534,261	-		LRK55_RS11495	0.81	-0.5
2,534,261	-		LRK55_RS11495	0.81	+0.0
2,534,261	-		LRK55_RS11495	0.81	-0.6
2,534,261	-		LRK55_RS11495	0.81	-2.3
2,534,261	-		LRK55_RS11495	0.81	+0.7
2,534,261	-		LRK55_RS11495	0.81	-1.7
2,534,261	-		LRK55_RS11495	0.81	+0.0
2,534,261	-		LRK55_RS11495	0.81	-0.4
2,534,416	+				+0.5
2,534,417	-				-2.3
2,534,417	-				-0.5
2,534,417	-				-0.9
2,534,417	-				-0.8
2,534,417	-				-0.7
2,534,417	-				+0.6
2,534,465	+				-0.6
2,534,465	+				-0.4
2,534,466	-				-1.4