Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS04190

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS04185 and LRK55_RS04190 are separated by 67 nucleotidesLRK55_RS04190 and LRK55_RS04195 are separated by 10 nucleotides LRK55_RS04185: LRK55_RS04185 - ABC transporter permease, at 886,975 to 888,264 _RS04185 LRK55_RS04190: LRK55_RS04190 - FtsX-like permease family protein, at 888,332 to 889,564 _RS04190 LRK55_RS04195: LRK55_RS04195 - ABC transporter permease, at 889,575 to 890,882 _RS04195 Position (kb) 888 889 890Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 887.387 kb on + strand, within LRK55_RS04185at 887.387 kb on + strand, within LRK55_RS04185at 887.387 kb on + strand, within LRK55_RS04185at 887.388 kb on - strand, within LRK55_RS04185at 887.388 kb on - strand, within LRK55_RS04185at 887.388 kb on - strand, within LRK55_RS04185at 887.388 kb on - strand, within LRK55_RS04185at 887.427 kb on + strand, within LRK55_RS04185at 887.427 kb on + strand, within LRK55_RS04185at 887.427 kb on + strand, within LRK55_RS04185at 887.428 kb on - strand, within LRK55_RS04185at 887.466 kb on - strand, within LRK55_RS04185at 887.577 kb on + strand, within LRK55_RS04185at 887.578 kb on - strand, within LRK55_RS04185at 887.591 kb on + strand, within LRK55_RS04185at 887.591 kb on + strand, within LRK55_RS04185at 887.592 kb on - strand, within LRK55_RS04185at 887.592 kb on - strand, within LRK55_RS04185at 887.592 kb on - strand, within LRK55_RS04185at 887.592 kb on - strand, within LRK55_RS04185at 887.592 kb on - strand, within LRK55_RS04185at 887.662 kb on - strand, within LRK55_RS04185at 887.664 kb on - strand, within LRK55_RS04185at 887.664 kb on - strand, within LRK55_RS04185at 887.681 kb on + strand, within LRK55_RS04185at 887.682 kb on - strand, within LRK55_RS04185at 887.682 kb on - strand, within LRK55_RS04185at 887.682 kb on - strand, within LRK55_RS04185at 887.770 kb on + strand, within LRK55_RS04185at 887.770 kb on + strand, within LRK55_RS04185at 887.771 kb on - strand, within LRK55_RS04185at 887.809 kb on - strand, within LRK55_RS04185at 888.030 kb on - strand, within LRK55_RS04185at 888.175 kb on - strandat 888.175 kb on - strandat 888.251 kb on + strandat 888.251 kb on + strandat 888.251 kb on + strandat 888.251 kb on + strandat 888.252 kb on - strandat 888.252 kb on - strandat 888.252 kb on - strandat 888.252 kb on - strandat 888.254 kb on + strandat 888.441 kb on + strandat 888.441 kb on + strandat 888.562 kb on - strand, within LRK55_RS04190at 888.562 kb on - strand, within LRK55_RS04190at 888.753 kb on + strand, within LRK55_RS04190at 888.754 kb on - strand, within LRK55_RS04190at 888.817 kb on + strand, within LRK55_RS04190at 888.817 kb on + strand, within LRK55_RS04190at 888.817 kb on + strand, within LRK55_RS04190at 888.818 kb on - strand, within LRK55_RS04190at 888.818 kb on - strand, within LRK55_RS04190at 888.858 kb on + strand, within LRK55_RS04190at 888.858 kb on + strand, within LRK55_RS04190at 888.858 kb on + strand, within LRK55_RS04190at 888.858 kb on + strand, within LRK55_RS04190at 888.858 kb on + strand, within LRK55_RS04190at 888.859 kb on - strand, within LRK55_RS04190at 888.859 kb on - strand, within LRK55_RS04190at 888.859 kb on - strand, within LRK55_RS04190at 888.859 kb on - strand, within LRK55_RS04190at 888.906 kb on + strand, within LRK55_RS04190at 888.907 kb on - strand, within LRK55_RS04190at 888.907 kb on - strand, within LRK55_RS04190at 888.927 kb on + strand, within LRK55_RS04190at 888.927 kb on + strand, within LRK55_RS04190at 888.927 kb on + strand, within LRK55_RS04190at 888.993 kb on + strand, within LRK55_RS04190at 888.993 kb on + strand, within LRK55_RS04190at 888.993 kb on + strand, within LRK55_RS04190at 888.993 kb on + strand, within LRK55_RS04190at 888.994 kb on - strand, within LRK55_RS04190at 888.994 kb on - strand, within LRK55_RS04190at 888.994 kb on - strand, within LRK55_RS04190at 888.994 kb on - strand, within LRK55_RS04190at 888.994 kb on - strand, within LRK55_RS04190at 888.994 kb on - strand, within LRK55_RS04190at 889.029 kb on - strand, within LRK55_RS04190at 889.197 kb on + strand, within LRK55_RS04190at 889.197 kb on + strand, within LRK55_RS04190at 889.197 kb on + strand, within LRK55_RS04190at 889.197 kb on + strand, within LRK55_RS04190at 889.198 kb on - strand, within LRK55_RS04190at 889.198 kb on - strand, within LRK55_RS04190at 889.198 kb on - strand, within LRK55_RS04190at 889.198 kb on - strand, within LRK55_RS04190at 889.353 kb on + strand, within LRK55_RS04190at 889.353 kb on + strand, within LRK55_RS04190at 889.353 kb on + strand, within LRK55_RS04190at 889.353 kb on + strand, within LRK55_RS04190at 889.354 kb on - strand, within LRK55_RS04190at 889.354 kb on - strand, within LRK55_RS04190at 889.548 kb on - strandat 889.548 kb on - strandat 889.548 kb on - strandat 889.962 kb on + strand, within LRK55_RS04195at 889.962 kb on + strand, within LRK55_RS04195at 889.962 kb on + strand, within LRK55_RS04195at 889.963 kb on - strand, within LRK55_RS04195at 889.963 kb on - strand, within LRK55_RS04195at 889.963 kb on - strand, within LRK55_RS04195at 889.987 kb on + strand, within LRK55_RS04195at 889.987 kb on + strand, within LRK55_RS04195at 890.090 kb on - strand, within LRK55_RS04195at 890.158 kb on + strand, within LRK55_RS04195at 890.158 kb on + strand, within LRK55_RS04195at 890.158 kb on + strand, within LRK55_RS04195at 890.159 kb on - strand, within LRK55_RS04195at 890.159 kb on - strand, within LRK55_RS04195at 890.159 kb on - strand, within LRK55_RS04195at 890.159 kb on - strand, within LRK55_RS04195at 890.159 kb on - strand, within LRK55_RS04195at 890.266 kb on + strand, within LRK55_RS04195at 890.294 kb on - strand, within LRK55_RS04195at 890.294 kb on - strand, within LRK55_RS04195at 890.294 kb on - strand, within LRK55_RS04195at 890.357 kb on + strand, within LRK55_RS04195at 890.358 kb on - strand, within LRK55_RS04195at 890.533 kb on + strand, within LRK55_RS04195at 890.533 kb on + strand, within LRK55_RS04195at 890.533 kb on + strand, within LRK55_RS04195at 890.534 kb on - strand, within LRK55_RS04195at 890.534 kb on - strand, within LRK55_RS04195

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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887,387 + LRK55_RS04185 0.32 +0.3
887,387 + LRK55_RS04185 0.32 +0.2
887,387 + LRK55_RS04185 0.32 +1.5
887,388 - LRK55_RS04185 0.32 +0.7
887,388 - LRK55_RS04185 0.32 -0.8
887,388 - LRK55_RS04185 0.32 -0.3
887,388 - LRK55_RS04185 0.32 -1.6
887,427 + LRK55_RS04185 0.35 -1.3
887,427 + LRK55_RS04185 0.35 +0.1
887,427 + LRK55_RS04185 0.35 -0.5
887,428 - LRK55_RS04185 0.35 +0.6
887,466 - LRK55_RS04185 0.38 -0.7
887,577 + LRK55_RS04185 0.47 +1.7
887,578 - LRK55_RS04185 0.47 -1.1
887,591 + LRK55_RS04185 0.48 -0.7
887,591 + LRK55_RS04185 0.48 -0.8
887,592 - LRK55_RS04185 0.48 -0.3
887,592 - LRK55_RS04185 0.48 +0.7
887,592 - LRK55_RS04185 0.48 -0.9
887,592 - LRK55_RS04185 0.48 -0.5
887,592 - LRK55_RS04185 0.48 -2.1
887,662 - LRK55_RS04185 0.53 +0.3
887,664 - LRK55_RS04185 0.53 -1.0
887,664 - LRK55_RS04185 0.53 -0.5
887,681 + LRK55_RS04185 0.55 +0.2
887,682 - LRK55_RS04185 0.55 +0.5
887,682 - LRK55_RS04185 0.55 -1.3
887,682 - LRK55_RS04185 0.55 -1.1
887,770 + LRK55_RS04185 0.62 -0.0
887,770 + LRK55_RS04185 0.62 -0.8
887,771 - LRK55_RS04185 0.62 -1.3
887,809 - LRK55_RS04185 0.65 -0.9
888,030 - LRK55_RS04185 0.82 -1.0
888,175 - -0.3
888,175 - -0.3
888,251 + +1.4
888,251 + +3.9
888,251 + +1.1
888,251 + -0.3
888,252 - +0.3
888,252 - -0.2
888,252 - -0.7
888,252 - -0.2
888,254 + +1.9
888,441 + -0.7
888,441 + -0.5
888,562 - LRK55_RS04190 0.19 +0.3
888,562 - LRK55_RS04190 0.19 +0.2
888,753 + LRK55_RS04190 0.34 -0.6
888,754 - LRK55_RS04190 0.34 -2.4
888,817 + LRK55_RS04190 0.39 +0.4
888,817 + LRK55_RS04190 0.39 -1.3
888,817 + LRK55_RS04190 0.39 -0.3
888,818 - LRK55_RS04190 0.39 +0.8
888,818 - LRK55_RS04190 0.39 +0.0
888,858 + LRK55_RS04190 0.43 +0.4
888,858 + LRK55_RS04190 0.43 -0.1
888,858 + LRK55_RS04190 0.43 +0.2
888,858 + LRK55_RS04190 0.43 -0.4
888,858 + LRK55_RS04190 0.43 +0.5
888,859 - LRK55_RS04190 0.43 -0.7
888,859 - LRK55_RS04190 0.43 +2.0
888,859 - LRK55_RS04190 0.43 +0.3
888,859 - LRK55_RS04190 0.43 -0.3
888,906 + LRK55_RS04190 0.47 -0.6
888,907 - LRK55_RS04190 0.47 +0.3
888,907 - LRK55_RS04190 0.47 -1.1
888,927 + LRK55_RS04190 0.48 +0.5
888,927 + LRK55_RS04190 0.48 -1.4
888,927 + LRK55_RS04190 0.48 +0.3
888,993 + LRK55_RS04190 0.54 +0.7
888,993 + LRK55_RS04190 0.54 -1.0
888,993 + LRK55_RS04190 0.54 +0.3
888,993 + LRK55_RS04190 0.54 -0.7
888,994 - LRK55_RS04190 0.54 -0.1
888,994 - LRK55_RS04190 0.54 -2.1
888,994 - LRK55_RS04190 0.54 +0.5
888,994 - LRK55_RS04190 0.54 +0.1
888,994 - LRK55_RS04190 0.54 -0.3
888,994 - LRK55_RS04190 0.54 -0.4
889,029 - LRK55_RS04190 0.57 -1.5
889,197 + LRK55_RS04190 0.70 -1.5
889,197 + LRK55_RS04190 0.70 -0.3
889,197 + LRK55_RS04190 0.70 +0.8
889,197 + LRK55_RS04190 0.70 +0.4
889,198 - LRK55_RS04190 0.70 -0.1
889,198 - LRK55_RS04190 0.70 -0.4
889,198 - LRK55_RS04190 0.70 -0.0
889,198 - LRK55_RS04190 0.70 -0.7
889,353 + LRK55_RS04190 0.83 +0.5
889,353 + LRK55_RS04190 0.83 +1.1
889,353 + LRK55_RS04190 0.83 +0.8
889,353 + LRK55_RS04190 0.83 +0.1
889,354 - LRK55_RS04190 0.83 +0.1
889,354 - LRK55_RS04190 0.83 -0.7
889,548 - +0.4
889,548 - -1.8
889,548 - +0.7
889,962 + LRK55_RS04195 0.30 -1.5
889,962 + LRK55_RS04195 0.30 -0.3
889,962 + LRK55_RS04195 0.30 +1.6
889,963 - LRK55_RS04195 0.30 -0.2
889,963 - LRK55_RS04195 0.30 +1.3
889,963 - LRK55_RS04195 0.30 -0.7
889,987 + LRK55_RS04195 0.31 -0.6
889,987 + LRK55_RS04195 0.31 -0.4
890,090 - LRK55_RS04195 0.39 +0.9
890,158 + LRK55_RS04195 0.45 -0.3
890,158 + LRK55_RS04195 0.45 -1.6
890,158 + LRK55_RS04195 0.45 +0.3
890,159 - LRK55_RS04195 0.45 -0.6
890,159 - LRK55_RS04195 0.45 +0.3
890,159 - LRK55_RS04195 0.45 +0.4
890,159 - LRK55_RS04195 0.45 -1.3
890,159 - LRK55_RS04195 0.45 -0.9
890,266 + LRK55_RS04195 0.53 -0.4
890,294 - LRK55_RS04195 0.55 +1.3
890,294 - LRK55_RS04195 0.55 -0.1
890,294 - LRK55_RS04195 0.55 +0.8
890,357 + LRK55_RS04195 0.60 +0.6
890,358 - LRK55_RS04195 0.60 -0.3
890,533 + LRK55_RS04195 0.73 -0.2
890,533 + LRK55_RS04195 0.73 -1.0
890,533 + LRK55_RS04195 0.73 +0.3
890,534 - LRK55_RS04195 0.73 +0.4
890,534 - LRK55_RS04195 0.73 -0.8

Or see this region's nucleotide sequence