Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS02525

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS02515 and LRK55_RS02520 overlap by 13 nucleotidesLRK55_RS02520 and LRK55_RS02525 are separated by 85 nucleotidesLRK55_RS02525 and LRK55_RS02530 overlap by 1 nucleotidesLRK55_RS02530 and LRK55_RS02535 are separated by 5 nucleotides LRK55_RS02515: LRK55_RS02515 - PepSY-associated TM helix domain-containing protein, at 539,791 to 541,347 _RS02515 LRK55_RS02520: LRK55_RS02520 - nicotinate-nucleotide adenylyltransferase, at 541,335 to 541,982 _RS02520 LRK55_RS02525: LRK55_RS02525 - DNA polymerase III subunit delta, at 542,068 to 543,078 _RS02525 LRK55_RS02530: LRK55_RS02530 - hypothetical protein, at 543,078 to 543,626 _RS02530 LRK55_RS02535: LRK55_RS02535 - leucine--tRNA ligase, at 543,632 to 546,271 _RS02535 Position (kb) 542 543 544Strain fitness (log2 ratio) -1 0 1at 541.083 kb on - strand, within LRK55_RS02515at 541.989 kb on + strandat 541.990 kb on - strandat 541.990 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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541,083 - LRK55_RS02515 0.83 +1.1
541,989 + -0.0
541,990 - -0.8
541,990 - -0.9

Or see this region's nucleotide sequence