Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01575 and LRK55_RS01580 are separated by 95 nucleotides LRK55_RS01580 and LRK55_RS01585 are separated by 181 nucleotides LRK55_RS01585 and LRK55_RS01590 overlap by 4 nucleotides
LRK55_RS01575: LRK55_RS01575 - hypothetical protein, at 335,577 to 336,071
_RS01575
LRK55_RS01580: LRK55_RS01580 - dCTP deaminase, at 336,167 to 336,733
_RS01580
LRK55_RS01585: LRK55_RS01585 - NADPH-dependent FMN reductase, at 336,915 to 337,460
_RS01585
LRK55_RS01590: LRK55_RS01590 - iron-sulfur cluster carrier protein ApbC, at 337,457 to 338,551
_RS01590
Position (kb) 336
337
338 Strain fitness (log2 ratio) -2
-1
0
1
2 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.920 kb on + strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 335.921 kb on - strand, within LRK55_RS01575 at 336.112 kb on + strand at 336.112 kb on + strand at 336.112 kb on + strand at 336.113 kb on - strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.204 kb on + strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.205 kb on - strand at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.225 kb on + strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.226 kb on - strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.288 kb on + strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.289 kb on - strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.393 kb on + strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.394 kb on - strand, within LRK55_RS01580 at 336.434 kb on + strand, within LRK55_RS01580 at 336.444 kb on + strand, within LRK55_RS01580 at 336.444 kb on + strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.445 kb on - strand, within LRK55_RS01580 at 336.559 kb on + strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.560 kb on - strand, within LRK55_RS01580 at 336.601 kb on - strand, within LRK55_RS01580 at 336.601 kb on - strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.606 kb on + strand, within LRK55_RS01580 at 336.607 kb on - strand, within LRK55_RS01580 at 336.621 kb on + strand, within LRK55_RS01580 at 336.622 kb on - strand, within LRK55_RS01580 at 336.748 kb on + strand at 336.748 kb on + strand at 336.748 kb on + strand at 336.748 kb on + strand at 336.748 kb on + strand at 336.749 kb on - strand at 336.749 kb on - strand at 336.749 kb on - strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.789 kb on + strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.790 kb on - strand at 336.836 kb on - strand at 336.836 kb on - strand at 336.836 kb on - strand at 336.916 kb on + strand at 336.916 kb on + strand at 337.102 kb on + strand, within LRK55_RS01585 at 337.103 kb on - strand, within LRK55_RS01585 at 337.213 kb on + strand, within LRK55_RS01585 at 337.214 kb on - strand, within LRK55_RS01585 at 337.339 kb on + strand, within LRK55_RS01585 at 337.339 kb on + strand, within LRK55_RS01585 at 337.339 kb on + strand, within LRK55_RS01585 at 337.339 kb on + strand, within LRK55_RS01585 at 337.339 kb on + strand, within LRK55_RS01585 at 337.340 kb on - strand, within LRK55_RS01585 at 337.340 kb on - strand, within LRK55_RS01585 at 337.340 kb on - strand, within LRK55_RS01585
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 335,920 + LRK55_RS01575 0.69 +0.1 335,920 + LRK55_RS01575 0.69 +1.8 335,920 + LRK55_RS01575 0.69 -0.3 335,920 + LRK55_RS01575 0.69 -1.3 335,920 + LRK55_RS01575 0.69 -0.4 335,921 - LRK55_RS01575 0.69 +0.4 335,921 - LRK55_RS01575 0.69 -0.5 335,921 - LRK55_RS01575 0.69 -0.1 335,921 - LRK55_RS01575 0.69 +0.6 335,921 - LRK55_RS01575 0.69 +0.4 336,112 + +0.3 336,112 + +0.3 336,112 + -0.1 336,113 - +0.2 336,204 + -0.3 336,204 + -1.5 336,204 + +1.3 336,204 + -1.4 336,204 + +0.3 336,204 + -0.5 336,204 + -0.9 336,204 + -1.5 336,205 - -0.3 336,205 - +0.4 336,205 - -0.3 336,205 - +1.3 336,205 - +1.4 336,225 + LRK55_RS01580 0.10 -0.2 336,225 + LRK55_RS01580 0.10 -0.1 336,225 + LRK55_RS01580 0.10 -2.3 336,225 + LRK55_RS01580 0.10 -0.9 336,225 + LRK55_RS01580 0.10 -0.8 336,226 - LRK55_RS01580 0.10 -0.2 336,226 - LRK55_RS01580 0.10 -2.1 336,226 - LRK55_RS01580 0.10 +0.4 336,226 - LRK55_RS01580 0.10 -1.5 336,288 + LRK55_RS01580 0.21 -0.9 336,288 + LRK55_RS01580 0.21 +1.4 336,288 + LRK55_RS01580 0.21 +0.2 336,288 + LRK55_RS01580 0.21 +0.0 336,288 + LRK55_RS01580 0.21 +0.4 336,288 + LRK55_RS01580 0.21 +0.1 336,289 - LRK55_RS01580 0.22 -1.3 336,289 - LRK55_RS01580 0.22 -0.7 336,289 - LRK55_RS01580 0.22 +0.9 336,289 - LRK55_RS01580 0.22 -1.2 336,289 - LRK55_RS01580 0.22 +0.8 336,393 + LRK55_RS01580 0.40 +0.5 336,393 + LRK55_RS01580 0.40 -0.1 336,393 + LRK55_RS01580 0.40 +1.2 336,393 + LRK55_RS01580 0.40 -2.5 336,393 + LRK55_RS01580 0.40 +0.4 336,393 + LRK55_RS01580 0.40 +1.0 336,394 - LRK55_RS01580 0.40 -1.5 336,394 - LRK55_RS01580 0.40 +0.5 336,394 - LRK55_RS01580 0.40 -1.9 336,394 - LRK55_RS01580 0.40 -1.1 336,394 - LRK55_RS01580 0.40 -2.2 336,394 - LRK55_RS01580 0.40 +0.8 336,434 + LRK55_RS01580 0.47 +0.6 336,444 + LRK55_RS01580 0.49 -1.7 336,444 + LRK55_RS01580 0.49 -0.6 336,445 - LRK55_RS01580 0.49 -0.4 336,445 - LRK55_RS01580 0.49 -0.3 336,445 - LRK55_RS01580 0.49 -0.3 336,445 - LRK55_RS01580 0.49 +0.7 336,559 + LRK55_RS01580 0.69 +0.3 336,560 - LRK55_RS01580 0.69 +0.9 336,560 - LRK55_RS01580 0.69 -2.2 336,560 - LRK55_RS01580 0.69 +0.2 336,560 - LRK55_RS01580 0.69 -0.1 336,601 - LRK55_RS01580 0.77 +0.8 336,601 - LRK55_RS01580 0.77 -1.1 336,606 + LRK55_RS01580 0.77 +1.6 336,606 + LRK55_RS01580 0.77 +0.5 336,606 + LRK55_RS01580 0.77 -0.1 336,606 + LRK55_RS01580 0.77 +1.1 336,606 + LRK55_RS01580 0.77 -1.0 336,606 + LRK55_RS01580 0.77 +0.2 336,607 - LRK55_RS01580 0.78 -0.3 336,621 + LRK55_RS01580 0.80 +0.5 336,622 - LRK55_RS01580 0.80 -0.6 336,748 + +0.1 336,748 + +0.5 336,748 + +1.2 336,748 + +0.2 336,748 + +0.3 336,749 - +0.4 336,749 - -0.1 336,749 - -1.6 336,789 + -0.7 336,789 + +0.3 336,789 + +0.4 336,789 + -0.8 336,789 + -1.3 336,789 + +0.6 336,789 + -0.9 336,789 + -0.4 336,790 - -1.8 336,790 - +0.7 336,790 - -0.6 336,790 - +0.6 336,790 - -1.6 336,836 - -0.4 336,836 - +0.7 336,836 - +0.1 336,916 + +0.6 336,916 + -1.9 337,102 + LRK55_RS01585 0.34 -0.4 337,103 - LRK55_RS01585 0.34 +0.1 337,213 + LRK55_RS01585 0.55 +0.0 337,214 - LRK55_RS01585 0.55 -1.8 337,339 + LRK55_RS01585 0.78 +2.1 337,339 + LRK55_RS01585 0.78 -0.9 337,339 + LRK55_RS01585 0.78 +0.6 337,339 + LRK55_RS01585 0.78 -0.0 337,339 + LRK55_RS01585 0.78 -1.5 337,340 - LRK55_RS01585 0.78 -0.1 337,340 - LRK55_RS01585 0.78 -0.4 337,340 - LRK55_RS01585 0.78 +0.1
Or see this region's nucleotide sequence