Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06960

Experiment: Anaerobic, pH7.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH7.5
1,498,792	+				+0.2
1,498,957	+		ABCV34_RS06955	0.21	-2.1
1,498,958	-		ABCV34_RS06955	0.21	-3.2
1,498,965	+		ABCV34_RS06955	0.22	-1.2
1,499,131	-		ABCV34_RS06955	0.38	-2.1
1,499,521	+		ABCV34_RS06955	0.77	-2.4
1,499,568	+		ABCV34_RS06955	0.82	-3.2
1,499,568	+		ABCV34_RS06955	0.82	-2.6
1,499,568	+		ABCV34_RS06955	0.82	-2.3
1,499,568	+		ABCV34_RS06955	0.82	-2.0
1,499,568	+		ABCV34_RS06955	0.82	-2.4
1,499,568	+		ABCV34_RS06955	0.82	-2.2
1,499,568	+		ABCV34_RS06955	0.82	-2.4
1,499,569	-		ABCV34_RS06955	0.82	-3.2
1,499,569	-		ABCV34_RS06955	0.82	-2.6
1,499,569	-		ABCV34_RS06955	0.82	-2.3
1,499,569	-		ABCV34_RS06955	0.82	-1.6
1,499,650	+				-2.2
1,499,650	+				-2.1
1,499,651	-				-2.2
1,499,792	+				-2.0
1,499,934	+		ABCV34_RS06960	0.25	-3.2
1,499,934	+		ABCV34_RS06960	0.25	-1.6
1,499,934	+		ABCV34_RS06960	0.25	-2.9
1,499,934	+		ABCV34_RS06960	0.25	-2.6
1,499,934	+		ABCV34_RS06960	0.25	-3.5
1,499,934	+		ABCV34_RS06960	0.25	-2.6
1,499,934	+		ABCV34_RS06960	0.25	-1.2
1,499,934	+		ABCV34_RS06960	0.25	-3.1
1,499,934	+		ABCV34_RS06960	0.25	-2.1
1,499,934	+		ABCV34_RS06960	0.25	-1.8
1,499,934	+		ABCV34_RS06960	0.25	-3.6
1,499,934	+		ABCV34_RS06960	0.25	-2.0
1,499,934	+		ABCV34_RS06960	0.25	-1.8
1,499,934	+		ABCV34_RS06960	0.25	-2.1
1,499,934	+		ABCV34_RS06960	0.25	-2.8
1,499,934	+		ABCV34_RS06960	0.25	-1.4
1,499,934	+		ABCV34_RS06960	0.25	-2.5
1,499,934	+		ABCV34_RS06960	0.25	-1.9
1,499,934	+		ABCV34_RS06960	0.25	-3.2
1,499,935	-		ABCV34_RS06960	0.25	-1.6
1,499,935	-		ABCV34_RS06960	0.25	-2.7
1,499,935	-		ABCV34_RS06960	0.25	-2.4
1,499,935	-		ABCV34_RS06960	0.25	-1.8
1,499,935	-		ABCV34_RS06960	0.25	-1.7
1,499,935	-		ABCV34_RS06960	0.25	-2.9
1,499,935	-		ABCV34_RS06960	0.25	-2.4
1,499,935	-		ABCV34_RS06960	0.25	-2.3
1,499,935	-		ABCV34_RS06960	0.25	-1.5
1,499,935	-		ABCV34_RS06960	0.25	-2.0
1,499,935	-		ABCV34_RS06960	0.25	-2.3
1,499,935	-		ABCV34_RS06960	0.25	-2.3
1,499,935	-		ABCV34_RS06960	0.25	-2.6
1,499,935	-		ABCV34_RS06960	0.25	-2.6
1,499,935	-		ABCV34_RS06960	0.25	-2.5
1,499,935	-		ABCV34_RS06960	0.25	-2.7
1,499,935	-		ABCV34_RS06960	0.25	-2.4
1,499,935	-		ABCV34_RS06960	0.25	-3.2
1,499,935	-		ABCV34_RS06960	0.25	-3.6
1,499,935	-		ABCV34_RS06960	0.25	-3.5
1,499,935	-		ABCV34_RS06960	0.25	-2.7
1,499,935	-		ABCV34_RS06960	0.25	-2.7
1,499,935	-		ABCV34_RS06960	0.25	-3.4
1,499,935	-		ABCV34_RS06960	0.25	-0.9
1,499,935	-		ABCV34_RS06960	0.25	-2.3
1,499,935	-		ABCV34_RS06960	0.25	-1.5
1,499,935	-		ABCV34_RS06960	0.25	-3.1
1,500,021	+		ABCV34_RS06960	0.37	-2.7
1,500,021	+		ABCV34_RS06960	0.37	-2.1
1,500,021	+		ABCV34_RS06960	0.37	-2.6
1,500,021	+		ABCV34_RS06960	0.37	-1.7
1,500,021	+		ABCV34_RS06960	0.37	-1.6
1,500,021	+		ABCV34_RS06960	0.37	-2.6
1,500,022	-		ABCV34_RS06960	0.37	-2.8
1,500,022	-		ABCV34_RS06960	0.37	-4.0
1,500,022	-		ABCV34_RS06960	0.37	-3.2
1,500,022	-		ABCV34_RS06960	0.37	-2.0
1,500,022	-		ABCV34_RS06960	0.37	-2.9
1,500,022	-		ABCV34_RS06960	0.37	-3.9
1,500,022	-		ABCV34_RS06960	0.37	-3.3
1,500,022	-		ABCV34_RS06960	0.37	-1.9
1,500,022	-		ABCV34_RS06960	0.37	-3.6
1,500,022	-		ABCV34_RS06960	0.37	-2.1
1,500,204	+		ABCV34_RS06960	0.63	-2.3
1,500,219	+		ABCV34_RS06960	0.65	-1.5
1,500,219	+		ABCV34_RS06960	0.65	-1.8
1,500,219	+		ABCV34_RS06960	0.65	-2.7
1,500,219	+		ABCV34_RS06960	0.65	-2.6
1,500,219	+		ABCV34_RS06960	0.65	-1.8
1,500,219	+		ABCV34_RS06960	0.65	-2.7
1,500,220	-		ABCV34_RS06960	0.65	-3.2
1,500,220	-		ABCV34_RS06960	0.65	-4.0
1,500,376	-		ABCV34_RS06960	0.87	-3.0
1,500,449	+				-2.2
1,500,449	+				-2.2
1,500,450	-				-2.1
1,500,450	-				-1.9
1,500,502	+				-1.8
1,500,502	+				-2.4
1,500,502	+				-2.8
1,500,502	+				-2.6
1,500,502	+				-2.3
1,500,502	+				-3.6
1,500,502	+				-3.3
1,500,502	+				-1.7
1,500,502	+				-2.6
1,500,502	+				-2.3
1,500,502	+				-2.6
1,500,502	+				-2.3
1,500,502	+				-2.2
1,500,502	+				-2.5
1,500,502	+				-2.8
1,500,503	-				-2.8
1,500,503	-				-2.2
1,500,503	-				-2.6
1,500,503	-				-2.2
1,500,503	-				-2.5
1,500,503	-				-2.9
1,500,503	-				-1.6
1,500,503	-				-2.9
1,500,503	-				-3.4
1,500,503	-				-2.9
1,500,503	-				-2.6
1,500,503	-				-2.3
1,500,503	-				-3.8
1,500,503	-				-2.4
1,500,503	-				-2.0
1,500,505	+				-1.4
1,500,506	-				-2.2
1,500,506	-				-2.9
1,500,506	-				-2.2
1,500,685	+		ABCV34_RS06965	0.31	-1.5
1,500,685	+		ABCV34_RS06965	0.31	-1.4
1,500,686	-		ABCV34_RS06965	0.31	-1.9
1,500,686	-		ABCV34_RS06965	0.31	-2.9
1,501,075	+		ABCV34_RS06965	0.87	-1.8
1,501,075	+		ABCV34_RS06965	0.87	-2.6
1,501,076	-		ABCV34_RS06965	0.87	-2.6
1,501,076	-		ABCV34_RS06965	0.87	-1.3
1,501,078	+		ABCV34_RS06965	0.88	-1.6
1,501,078	+		ABCV34_RS06965	0.88	-1.7
1,501,078	+		ABCV34_RS06965	0.88	-1.9
1,501,079	-		ABCV34_RS06965	0.88	-2.8
1,501,322	-		ABCV34_RS06970	0.11	-1.9
1,501,322	-		ABCV34_RS06970	0.11	-2.0