Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06545

Experiment: Anaerobic, pH7.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS06535 and ABCV34_RS06540 are separated by 11 nucleotidesABCV34_RS06540 and ABCV34_RS06545 overlap by 4 nucleotidesABCV34_RS06545 and ABCV34_RS06550 are separated by 40 nucleotides ABCV34_RS06535: ABCV34_RS06535 - NEW3 domain-containing protein, at 1,419,956 to 1,421,122 _RS06535 ABCV34_RS06540: ABCV34_RS06540 - ABC transporter ATP-binding protein, at 1,421,134 to 1,422,102 _RS06540 ABCV34_RS06545: ABCV34_RS06545 - ABC transporter permease, at 1,422,099 to 1,423,067 _RS06545 ABCV34_RS06550: ABCV34_RS06550 - EcsC family protein, at 1,423,108 to 1,423,932 _RS06550 Position (kb) 1422 1423 1424Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1421.207 kb on - strandat 1421.207 kb on - strandat 1421.207 kb on - strandat 1421.207 kb on - strandat 1421.407 kb on + strand, within ABCV34_RS06540at 1421.407 kb on + strand, within ABCV34_RS06540at 1421.408 kb on - strand, within ABCV34_RS06540at 1421.408 kb on - strand, within ABCV34_RS06540at 1421.408 kb on - strand, within ABCV34_RS06540at 1421.408 kb on - strand, within ABCV34_RS06540at 1421.408 kb on - strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.409 kb on + strand, within ABCV34_RS06540at 1421.410 kb on - strand, within ABCV34_RS06540at 1421.410 kb on - strand, within ABCV34_RS06540at 1421.410 kb on - strand, within ABCV34_RS06540at 1421.410 kb on - strand, within ABCV34_RS06540at 1421.410 kb on - strand, within ABCV34_RS06540at 1421.410 kb on - strand, within ABCV34_RS06540at 1421.410 kb on - strand, within ABCV34_RS06540at 1421.431 kb on + strand, within ABCV34_RS06540at 1421.431 kb on + strand, within ABCV34_RS06540at 1421.431 kb on + strand, within ABCV34_RS06540at 1421.431 kb on + strand, within ABCV34_RS06540at 1421.432 kb on - strand, within ABCV34_RS06540at 1421.432 kb on - strand, within ABCV34_RS06540at 1421.432 kb on - strand, within ABCV34_RS06540at 1421.465 kb on - strand, within ABCV34_RS06540at 1421.793 kb on + strand, within ABCV34_RS06540at 1421.794 kb on - strand, within ABCV34_RS06540at 1421.794 kb on - strand, within ABCV34_RS06540at 1421.844 kb on - strand, within ABCV34_RS06540at 1421.844 kb on - strand, within ABCV34_RS06540at 1421.844 kb on - strand, within ABCV34_RS06540at 1421.956 kb on + strand, within ABCV34_RS06540at 1421.957 kb on - strand, within ABCV34_RS06540at 1422.068 kb on - strandat 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.232 kb on + strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.233 kb on - strand, within ABCV34_RS06545at 1422.234 kb on + strand, within ABCV34_RS06545at 1422.234 kb on + strand, within ABCV34_RS06545at 1422.234 kb on + strand, within ABCV34_RS06545at 1422.234 kb on + strand, within ABCV34_RS06545at 1422.234 kb on + strand, within ABCV34_RS06545at 1422.235 kb on - strand, within ABCV34_RS06545at 1422.235 kb on - strand, within ABCV34_RS06545at 1422.235 kb on - strand, within ABCV34_RS06545at 1422.235 kb on - strand, within ABCV34_RS06545at 1422.235 kb on - strand, within ABCV34_RS06545at 1422.235 kb on - strand, within ABCV34_RS06545at 1422.236 kb on + strand, within ABCV34_RS06545at 1422.236 kb on + strand, within ABCV34_RS06545at 1422.236 kb on + strand, within ABCV34_RS06545at 1422.236 kb on + strand, within ABCV34_RS06545at 1422.236 kb on + strand, within ABCV34_RS06545at 1422.236 kb on + strand, within ABCV34_RS06545at 1422.236 kb on + strand, within ABCV34_RS06545at 1422.237 kb on - strand, within ABCV34_RS06545at 1422.237 kb on - strand, within ABCV34_RS06545at 1422.237 kb on - strand, within ABCV34_RS06545at 1422.237 kb on - strand, within ABCV34_RS06545at 1422.244 kb on + strand, within ABCV34_RS06545at 1422.244 kb on + strand, within ABCV34_RS06545at 1422.244 kb on + strand, within ABCV34_RS06545at 1422.245 kb on - strand, within ABCV34_RS06545at 1422.399 kb on + strand, within ABCV34_RS06545at 1422.399 kb on + strand, within ABCV34_RS06545at 1422.441 kb on + strand, within ABCV34_RS06545at 1422.441 kb on + strand, within ABCV34_RS06545at 1422.442 kb on - strand, within ABCV34_RS06545at 1422.612 kb on + strand, within ABCV34_RS06545at 1422.613 kb on - strand, within ABCV34_RS06545at 1422.804 kb on - strand, within ABCV34_RS06545at 1422.804 kb on - strand, within ABCV34_RS06545at 1422.804 kb on - strand, within ABCV34_RS06545at 1423.032 kb on + strandat 1423.032 kb on + strandat 1423.032 kb on + strandat 1423.130 kb on + strandat 1423.130 kb on + strandat 1423.130 kb on + strandat 1423.130 kb on + strandat 1423.130 kb on + strandat 1423.131 kb on - strandat 1423.131 kb on - strandat 1423.131 kb on - strandat 1423.131 kb on - strandat 1423.131 kb on - strandat 1423.382 kb on + strand, within ABCV34_RS06550at 1423.430 kb on + strand, within ABCV34_RS06550at 1423.430 kb on + strand, within ABCV34_RS06550at 1423.431 kb on - strand, within ABCV34_RS06550at 1423.431 kb on - strand, within ABCV34_RS06550at 1423.433 kb on + strand, within ABCV34_RS06550at 1423.938 kb on + strandat 1423.939 kb on - strandat 1423.939 kb on - strandat 1423.939 kb on - strandat 1423.939 kb on - strandat 1424.006 kb on + strandat 1424.006 kb on + strandat 1424.012 kb on + strandat 1424.012 kb on + strandat 1424.012 kb on + strandat 1424.012 kb on + strandat 1424.012 kb on + strandat 1424.012 kb on + strandat 1424.013 kb on - strandat 1424.013 kb on - strandat 1424.013 kb on - strandat 1424.013 kb on - strandat 1424.013 kb on - strandat 1424.013 kb on - strandat 1424.027 kb on + strandat 1424.027 kb on + strandat 1424.027 kb on + strandat 1424.027 kb on + strandat 1424.028 kb on - strandat 1424.028 kb on - strandat 1424.048 kb on + strandat 1424.048 kb on + strandat 1424.048 kb on + strandat 1424.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaerobic, pH7.5
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1,421,207 - -2.0
1,421,207 - -2.7
1,421,207 - -2.6
1,421,207 - -2.1
1,421,407 + ABCV34_RS06540 0.28 -1.9
1,421,407 + ABCV34_RS06540 0.28 -3.2
1,421,408 - ABCV34_RS06540 0.28 -1.2
1,421,408 - ABCV34_RS06540 0.28 -2.3
1,421,408 - ABCV34_RS06540 0.28 -2.2
1,421,408 - ABCV34_RS06540 0.28 -2.7
1,421,408 - ABCV34_RS06540 0.28 -2.6
1,421,409 + ABCV34_RS06540 0.28 -2.4
1,421,409 + ABCV34_RS06540 0.28 -2.3
1,421,409 + ABCV34_RS06540 0.28 -3.5
1,421,409 + ABCV34_RS06540 0.28 -2.1
1,421,409 + ABCV34_RS06540 0.28 -2.4
1,421,409 + ABCV34_RS06540 0.28 -2.1
1,421,409 + ABCV34_RS06540 0.28 -2.7
1,421,409 + ABCV34_RS06540 0.28 -2.5
1,421,409 + ABCV34_RS06540 0.28 -2.0
1,421,409 + ABCV34_RS06540 0.28 -1.8
1,421,410 - ABCV34_RS06540 0.28 -3.0
1,421,410 - ABCV34_RS06540 0.28 -1.8
1,421,410 - ABCV34_RS06540 0.28 -2.1
1,421,410 - ABCV34_RS06540 0.28 -0.9
1,421,410 - ABCV34_RS06540 0.28 -2.8
1,421,410 - ABCV34_RS06540 0.28 -2.0
1,421,410 - ABCV34_RS06540 0.28 -1.5
1,421,431 + ABCV34_RS06540 0.31 -1.7
1,421,431 + ABCV34_RS06540 0.31 -2.7
1,421,431 + ABCV34_RS06540 0.31 -3.0
1,421,431 + ABCV34_RS06540 0.31 -2.0
1,421,432 - ABCV34_RS06540 0.31 -0.7
1,421,432 - ABCV34_RS06540 0.31 -2.8
1,421,432 - ABCV34_RS06540 0.31 -1.6
1,421,465 - ABCV34_RS06540 0.34 -2.2
1,421,793 + ABCV34_RS06540 0.68 -2.5
1,421,794 - ABCV34_RS06540 0.68 -2.4
1,421,794 - ABCV34_RS06540 0.68 -2.1
1,421,844 - ABCV34_RS06540 0.73 -1.9
1,421,844 - ABCV34_RS06540 0.73 -2.8
1,421,844 - ABCV34_RS06540 0.73 -1.9
1,421,956 + ABCV34_RS06540 0.85 -2.3
1,421,957 - ABCV34_RS06540 0.85 -1.7
1,422,068 - -2.9
1,422,232 + ABCV34_RS06545 0.14 -2.6
1,422,232 + ABCV34_RS06545 0.14 -2.1
1,422,232 + ABCV34_RS06545 0.14 -0.6
1,422,232 + ABCV34_RS06545 0.14 -2.9
1,422,232 + ABCV34_RS06545 0.14 -4.2
1,422,232 + ABCV34_RS06545 0.14 -2.9
1,422,232 + ABCV34_RS06545 0.14 -2.3
1,422,232 + ABCV34_RS06545 0.14 -3.5
1,422,232 + ABCV34_RS06545 0.14 -2.0
1,422,232 + ABCV34_RS06545 0.14 -2.6
1,422,232 + ABCV34_RS06545 0.14 -2.8
1,422,232 + ABCV34_RS06545 0.14 -2.3
1,422,233 - ABCV34_RS06545 0.14 -2.1
1,422,233 - ABCV34_RS06545 0.14 -2.3
1,422,233 - ABCV34_RS06545 0.14 -3.8
1,422,233 - ABCV34_RS06545 0.14 -1.5
1,422,233 - ABCV34_RS06545 0.14 -2.3
1,422,233 - ABCV34_RS06545 0.14 -1.7
1,422,233 - ABCV34_RS06545 0.14 -2.8
1,422,233 - ABCV34_RS06545 0.14 -1.1
1,422,233 - ABCV34_RS06545 0.14 -2.6
1,422,233 - ABCV34_RS06545 0.14 -2.4
1,422,233 - ABCV34_RS06545 0.14 -2.5
1,422,234 + ABCV34_RS06545 0.14 -2.5
1,422,234 + ABCV34_RS06545 0.14 -2.3
1,422,234 + ABCV34_RS06545 0.14 -2.7
1,422,234 + ABCV34_RS06545 0.14 -1.8
1,422,234 + ABCV34_RS06545 0.14 -2.1
1,422,235 - ABCV34_RS06545 0.14 -1.8
1,422,235 - ABCV34_RS06545 0.14 -2.0
1,422,235 - ABCV34_RS06545 0.14 -2.6
1,422,235 - ABCV34_RS06545 0.14 -1.7
1,422,235 - ABCV34_RS06545 0.14 -2.1
1,422,235 - ABCV34_RS06545 0.14 -1.0
1,422,236 + ABCV34_RS06545 0.14 -2.3
1,422,236 + ABCV34_RS06545 0.14 -3.3
1,422,236 + ABCV34_RS06545 0.14 -2.8
1,422,236 + ABCV34_RS06545 0.14 -1.7
1,422,236 + ABCV34_RS06545 0.14 -1.7
1,422,236 + ABCV34_RS06545 0.14 -2.2
1,422,236 + ABCV34_RS06545 0.14 -1.9
1,422,237 - ABCV34_RS06545 0.14 -2.5
1,422,237 - ABCV34_RS06545 0.14 -2.2
1,422,237 - ABCV34_RS06545 0.14 -1.8
1,422,237 - ABCV34_RS06545 0.14 -2.0
1,422,244 + ABCV34_RS06545 0.15 -2.6
1,422,244 + ABCV34_RS06545 0.15 -3.0
1,422,244 + ABCV34_RS06545 0.15 -2.8
1,422,245 - ABCV34_RS06545 0.15 -2.3
1,422,399 + ABCV34_RS06545 0.31 -3.1
1,422,399 + ABCV34_RS06545 0.31 -2.1
1,422,441 + ABCV34_RS06545 0.35 -2.2
1,422,441 + ABCV34_RS06545 0.35 -3.0
1,422,442 - ABCV34_RS06545 0.35 -1.7
1,422,612 + ABCV34_RS06545 0.53 -1.6
1,422,613 - ABCV34_RS06545 0.53 -2.5
1,422,804 - ABCV34_RS06545 0.73 -1.8
1,422,804 - ABCV34_RS06545 0.73 -2.6
1,422,804 - ABCV34_RS06545 0.73 -1.8
1,423,032 + -1.8
1,423,032 + -2.4
1,423,032 + -2.5
1,423,130 + -1.7
1,423,130 + -2.8
1,423,130 + -1.0
1,423,130 + -1.7
1,423,130 + -2.6
1,423,131 - -1.8
1,423,131 - -2.3
1,423,131 - -2.2
1,423,131 - -3.0
1,423,131 - -2.8
1,423,382 + ABCV34_RS06550 0.33 -2.0
1,423,430 + ABCV34_RS06550 0.39 -2.4
1,423,430 + ABCV34_RS06550 0.39 -1.4
1,423,431 - ABCV34_RS06550 0.39 -4.3
1,423,431 - ABCV34_RS06550 0.39 -2.4
1,423,433 + ABCV34_RS06550 0.39 -2.9
1,423,938 + -2.5
1,423,939 - -1.7
1,423,939 - -2.6
1,423,939 - -2.4
1,423,939 - -3.4
1,424,006 + -2.0
1,424,006 + -2.2
1,424,012 + -2.3
1,424,012 + -2.5
1,424,012 + -1.9
1,424,012 + -1.4
1,424,012 + -1.5
1,424,012 + -1.7
1,424,013 - -4.2
1,424,013 - -2.6
1,424,013 - -0.6
1,424,013 - -2.1
1,424,013 - -1.4
1,424,013 - -2.3
1,424,027 + -0.5
1,424,027 + -1.5
1,424,027 + -2.9
1,424,027 + -1.2
1,424,028 - -2.7
1,424,028 - -1.7
1,424,048 + -1.8
1,424,048 + -2.7
1,424,048 + -2.2
1,424,049 - -3.0

Or see this region's nucleotide sequence