Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS04785

Experiment: Anaerobic, pH7.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaerobic, pH7.5
1,034,017	-		ABCV34_RS04780	0.53	-0.7
1,034,053	-		ABCV34_RS04780	0.55	-0.7
1,034,053	-		ABCV34_RS04780	0.55	-0.1
1,034,123	+		ABCV34_RS04780	0.59	-1.1
1,034,123	+		ABCV34_RS04780	0.59	+0.6
1,034,123	+		ABCV34_RS04780	0.59	-1.1
1,034,123	+		ABCV34_RS04780	0.59	-0.2
1,034,123	+		ABCV34_RS04780	0.59	-0.3
1,034,123	+		ABCV34_RS04780	0.59	+0.1
1,034,123	+		ABCV34_RS04780	0.59	-0.5
1,034,124	-		ABCV34_RS04780	0.59	-0.6
1,034,124	-		ABCV34_RS04780	0.59	-0.5
1,034,124	-		ABCV34_RS04780	0.59	-0.8
1,034,352	+		ABCV34_RS04780	0.73	-1.3
1,034,352	+		ABCV34_RS04780	0.73	-0.5
1,034,352	+		ABCV34_RS04780	0.73	-1.1
1,034,353	-		ABCV34_RS04780	0.73	-1.3
1,034,486	+		ABCV34_RS04780	0.81	-0.9
1,034,486	+		ABCV34_RS04780	0.81	-0.4
1,034,486	+		ABCV34_RS04780	0.81	+0.3
1,034,486	+		ABCV34_RS04780	0.81	-1.1
1,034,487	-		ABCV34_RS04780	0.81	-0.5
1,034,487	-		ABCV34_RS04780	0.81	-0.9
1,034,487	-		ABCV34_RS04780	0.81	-0.1
1,034,558	+		ABCV34_RS04780	0.86	-0.1
1,034,558	+		ABCV34_RS04780	0.86	-0.9
1,034,558	+		ABCV34_RS04780	0.86	+0.1
1,034,559	-		ABCV34_RS04780	0.86	-0.7
1,034,559	-		ABCV34_RS04780	0.86	-0.8
1,034,559	-		ABCV34_RS04780	0.86	-0.0
1,034,559	-		ABCV34_RS04780	0.86	-0.3
1,034,559	-		ABCV34_RS04780	0.86	-0.3
1,034,680	+				-0.4
1,034,681	-				-0.6
1,034,681	-				-1.0
1,034,819	+				+1.4
1,034,827	+				-0.5
1,034,843	+				-0.6
1,034,843	+				-1.3
1,034,843	+				-0.9
1,034,843	+				-0.7
1,034,844	-				-0.6
1,034,844	-				-0.6
1,034,844	-				-0.0
1,034,956	+				-0.5
1,034,956	+				-2.7
1,034,957	-				-0.4
1,035,223	+				-0.1
1,035,223	+				-1.1
1,035,223	+				-1.3
1,035,223	+				-0.6
1,035,223	+				-1.2
1,035,223	+				-0.4
1,035,223	+				-1.9
1,035,223	+				-2.2
1,035,223	+				-0.7
1,035,223	+				-3.2
1,035,223	+				-2.1
1,035,223	+				-1.5
1,035,223	+				-2.0
1,035,224	-				-2.4
1,035,224	-				-0.8
1,035,224	-				-1.7
1,035,224	-				-1.7
1,035,370	+		ABCV34_RS04790	0.36	-4.7
1,035,370	+		ABCV34_RS04790	0.36	-4.3
1,035,370	+		ABCV34_RS04790	0.36	-3.5
1,035,370	+		ABCV34_RS04790	0.36	-3.6
1,035,370	+		ABCV34_RS04790	0.36	-3.9
1,035,371	-		ABCV34_RS04790	0.36	-2.9
1,035,371	-		ABCV34_RS04790	0.36	-2.8
1,035,371	-		ABCV34_RS04790	0.36	-5.8
1,035,371	-		ABCV34_RS04790	0.36	-4.2
1,035,430	+		ABCV34_RS04790	0.50	-4.6
1,035,430	+		ABCV34_RS04790	0.50	-3.6
1,035,430	+		ABCV34_RS04790	0.50	-1.9
1,035,430	+		ABCV34_RS04790	0.50	-3.2
1,035,430	+		ABCV34_RS04790	0.50	-4.3
1,035,431	-		ABCV34_RS04790	0.50	-3.9
1,035,431	-		ABCV34_RS04790	0.50	-4.0
1,035,629	+				-4.2
1,035,629	+				-2.7
1,035,629	+				-2.5
1,035,629	+				-2.6
1,035,630	-				-2.4
1,035,747	+		ABCV34_RS04795	0.12	-3.7
1,035,747	+		ABCV34_RS04795	0.12	-1.5
1,035,747	+		ABCV34_RS04795	0.12	-1.9
1,035,747	+		ABCV34_RS04795	0.12	-2.5
1,035,747	+		ABCV34_RS04795	0.12	-2.7
1,035,747	+		ABCV34_RS04795	0.12	-2.2
1,035,747	+		ABCV34_RS04795	0.12	-1.9
1,035,748	-		ABCV34_RS04795	0.12	+0.1
1,035,748	-		ABCV34_RS04795	0.12	-2.7
1,035,748	-		ABCV34_RS04795	0.12	-3.1
1,035,748	-		ABCV34_RS04795	0.12	-2.5
1,035,979	+		ABCV34_RS04795	0.36	-1.9
1,035,979	+		ABCV34_RS04795	0.36	-2.9
1,035,979	+		ABCV34_RS04795	0.36	-3.1
1,035,979	+		ABCV34_RS04795	0.36	-2.9
1,035,980	-		ABCV34_RS04795	0.36	-3.1
1,035,980	-		ABCV34_RS04795	0.36	-3.1
1,035,981	+		ABCV34_RS04795	0.36	-1.9
1,035,981	+		ABCV34_RS04795	0.36	-1.6
1,035,982	-		ABCV34_RS04795	0.36	-3.2
1,035,982	-		ABCV34_RS04795	0.36	-3.4
1,035,982	-		ABCV34_RS04795	0.36	-4.2
1,035,982	-		ABCV34_RS04795	0.36	-3.1
1,035,982	-		ABCV34_RS04795	0.36	-3.1
1,036,178	-		ABCV34_RS04795	0.57	-3.4
1,036,178	-		ABCV34_RS04795	0.57	-3.2
1,036,178	-		ABCV34_RS04795	0.57	-4.5
1,036,179	+		ABCV34_RS04795	0.57	-3.5
1,036,180	-		ABCV34_RS04795	0.57	-3.5
1,036,180	-		ABCV34_RS04795	0.57	-3.4