Experiment: Anaerobic, pH7.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02085 and ABCV34_RS02090 are separated by 326 nucleotides ABCV34_RS02090 and ABCV34_RS02095 are separated by 134 nucleotides ABCV34_RS02095 and ABCV34_RS02100 are separated by 125 nucleotides ABCV34_RS02100 and ABCV34_RS02105 are separated by 79 nucleotides
ABCV34_RS02085: ABCV34_RS02085 - hypothetical protein, at 468,862 to 469,350
_RS02085
ABCV34_RS02090: ABCV34_RS02090 - hypothetical protein, at 469,677 to 470,165
_RS02090
ABCV34_RS02095: ABCV34_RS02095 - site-specific integrase, at 470,300 to 471,298
_RS02095
ABCV34_RS02100: ABCV34_RS02100 - tRNA-Met, at 471,424 to 471,500
_RS02100
ABCV34_RS02105: ABCV34_RS02105 - SMC-Scp complex subunit ScpB, at 471,580 to 472,200
_RS02105
Position (kb) 470
471
472 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 469.302 kb on + strand at 469.441 kb on + strand at 469.461 kb on + strand at 469.549 kb on + strand at 469.550 kb on - strand at 469.629 kb on + strand at 469.629 kb on + strand at 469.629 kb on + strand at 469.671 kb on + strand at 469.700 kb on + strand at 469.791 kb on + strand, within ABCV34_RS02090 at 469.856 kb on - strand, within ABCV34_RS02090 at 469.872 kb on + strand, within ABCV34_RS02090 at 469.872 kb on + strand, within ABCV34_RS02090 at 469.873 kb on - strand, within ABCV34_RS02090 at 470.073 kb on + strand, within ABCV34_RS02090 at 470.073 kb on + strand, within ABCV34_RS02090 at 470.073 kb on + strand, within ABCV34_RS02090 at 470.073 kb on + strand, within ABCV34_RS02090 at 470.074 kb on - strand, within ABCV34_RS02090 at 470.074 kb on - strand, within ABCV34_RS02090 at 470.074 kb on - strand, within ABCV34_RS02090 at 470.074 kb on - strand, within ABCV34_RS02090 at 470.115 kb on + strand, within ABCV34_RS02090 at 470.115 kb on + strand, within ABCV34_RS02090 at 470.116 kb on - strand, within ABCV34_RS02090 at 470.116 kb on - strand, within ABCV34_RS02090 at 470.116 kb on - strand, within ABCV34_RS02090 at 470.324 kb on + strand at 470.325 kb on - strand at 470.349 kb on + strand at 470.350 kb on - strand at 470.350 kb on - strand at 470.352 kb on + strand at 470.352 kb on + strand at 470.353 kb on - strand at 470.608 kb on + strand, within ABCV34_RS02095 at 470.608 kb on + strand, within ABCV34_RS02095 at 470.609 kb on - strand, within ABCV34_RS02095 at 470.609 kb on - strand, within ABCV34_RS02095 at 470.609 kb on - strand, within ABCV34_RS02095 at 470.693 kb on + strand, within ABCV34_RS02095 at 470.693 kb on + strand, within ABCV34_RS02095 at 470.693 kb on + strand, within ABCV34_RS02095 at 470.693 kb on + strand, within ABCV34_RS02095 at 470.693 kb on + strand, within ABCV34_RS02095 at 470.694 kb on - strand, within ABCV34_RS02095 at 470.694 kb on - strand, within ABCV34_RS02095 at 470.694 kb on - strand, within ABCV34_RS02095 at 470.694 kb on - strand, within ABCV34_RS02095 at 470.694 kb on - strand, within ABCV34_RS02095 at 470.694 kb on - strand, within ABCV34_RS02095 at 470.694 kb on - strand, within ABCV34_RS02095 at 470.740 kb on + strand, within ABCV34_RS02095 at 470.740 kb on + strand, within ABCV34_RS02095 at 470.740 kb on + strand, within ABCV34_RS02095 at 470.740 kb on + strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.741 kb on - strand, within ABCV34_RS02095 at 470.833 kb on + strand, within ABCV34_RS02095 at 470.833 kb on + strand, within ABCV34_RS02095 at 470.833 kb on + strand, within ABCV34_RS02095 at 470.833 kb on + strand, within ABCV34_RS02095 at 470.833 kb on + strand, within ABCV34_RS02095 at 470.834 kb on - strand, within ABCV34_RS02095 at 470.834 kb on - strand, within ABCV34_RS02095 at 470.863 kb on + strand, within ABCV34_RS02095 at 470.864 kb on - strand, within ABCV34_RS02095 at 470.864 kb on - strand, within ABCV34_RS02095 at 470.918 kb on + strand, within ABCV34_RS02095 at 470.918 kb on + strand, within ABCV34_RS02095 at 470.970 kb on + strand, within ABCV34_RS02095 at 470.971 kb on - strand, within ABCV34_RS02095 at 470.990 kb on - strand, within ABCV34_RS02095 at 471.070 kb on + strand, within ABCV34_RS02095 at 471.097 kb on - strand, within ABCV34_RS02095 at 471.097 kb on - strand, within ABCV34_RS02095 at 471.146 kb on + strand, within ABCV34_RS02095 at 471.146 kb on + strand, within ABCV34_RS02095 at 471.146 kb on + strand, within ABCV34_RS02095 at 471.146 kb on + strand, within ABCV34_RS02095 at 471.146 kb on + strand, within ABCV34_RS02095 at 471.146 kb on + strand, within ABCV34_RS02095 at 471.147 kb on - strand, within ABCV34_RS02095 at 471.147 kb on - strand, within ABCV34_RS02095 at 471.147 kb on - strand, within ABCV34_RS02095 at 471.264 kb on + strand at 471.265 kb on - strand at 471.270 kb on + strand at 471.271 kb on - strand at 471.271 kb on - strand at 471.271 kb on - strand at 471.271 kb on - strand at 471.271 kb on - strand at 471.337 kb on + strand at 471.377 kb on - strand at 471.421 kb on - strand at 471.576 kb on + strand at 471.576 kb on + strand at 471.576 kb on + strand at 471.605 kb on + strand at 471.675 kb on + strand, within ABCV34_RS02105 at 471.675 kb on + strand, within ABCV34_RS02105 at 472.160 kb on + strand at 472.160 kb on + strand at 472.283 kb on + strand at 472.283 kb on + strand at 472.292 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic, pH7.5 remove 469,302 + -0.9 469,441 + -1.9 469,461 + -1.5 469,549 + -1.2 469,550 - +0.1 469,629 + -2.8 469,629 + -2.3 469,629 + -3.1 469,671 + -3.8 469,700 + -1.3 469,791 + ABCV34_RS02090 0.23 -2.3 469,856 - ABCV34_RS02090 0.37 -1.8 469,872 + ABCV34_RS02090 0.40 -1.4 469,872 + ABCV34_RS02090 0.40 -3.6 469,873 - ABCV34_RS02090 0.40 -3.4 470,073 + ABCV34_RS02090 0.81 -1.5 470,073 + ABCV34_RS02090 0.81 -2.1 470,073 + ABCV34_RS02090 0.81 -2.2 470,073 + ABCV34_RS02090 0.81 -2.2 470,074 - ABCV34_RS02090 0.81 -1.5 470,074 - ABCV34_RS02090 0.81 -3.3 470,074 - ABCV34_RS02090 0.81 -3.7 470,074 - ABCV34_RS02090 0.81 -1.3 470,115 + ABCV34_RS02090 0.90 -2.4 470,115 + ABCV34_RS02090 0.90 -2.5 470,116 - ABCV34_RS02090 0.90 -1.9 470,116 - ABCV34_RS02090 0.90 -1.3 470,116 - ABCV34_RS02090 0.90 -1.3 470,324 + -2.9 470,325 - -3.2 470,349 + -2.3 470,350 - -1.9 470,350 - -0.9 470,352 + +0.1 470,352 + -2.9 470,353 - -2.3 470,608 + ABCV34_RS02095 0.31 -2.1 470,608 + ABCV34_RS02095 0.31 -3.3 470,609 - ABCV34_RS02095 0.31 -2.8 470,609 - ABCV34_RS02095 0.31 -2.8 470,609 - ABCV34_RS02095 0.31 -2.7 470,693 + ABCV34_RS02095 0.39 -1.3 470,693 + ABCV34_RS02095 0.39 -2.6 470,693 + ABCV34_RS02095 0.39 -3.0 470,693 + ABCV34_RS02095 0.39 -1.2 470,693 + ABCV34_RS02095 0.39 -2.8 470,694 - ABCV34_RS02095 0.39 -1.3 470,694 - ABCV34_RS02095 0.39 -1.5 470,694 - ABCV34_RS02095 0.39 -1.3 470,694 - ABCV34_RS02095 0.39 -2.3 470,694 - ABCV34_RS02095 0.39 -4.0 470,694 - ABCV34_RS02095 0.39 -0.7 470,694 - ABCV34_RS02095 0.39 -3.1 470,740 + ABCV34_RS02095 0.44 -3.4 470,740 + ABCV34_RS02095 0.44 +0.6 470,740 + ABCV34_RS02095 0.44 -1.3 470,740 + ABCV34_RS02095 0.44 -3.4 470,741 - ABCV34_RS02095 0.44 -0.9 470,741 - ABCV34_RS02095 0.44 -2.5 470,741 - ABCV34_RS02095 0.44 -2.6 470,741 - ABCV34_RS02095 0.44 -1.5 470,741 - ABCV34_RS02095 0.44 -2.9 470,741 - ABCV34_RS02095 0.44 -1.9 470,741 - ABCV34_RS02095 0.44 -1.1 470,741 - ABCV34_RS02095 0.44 -2.1 470,833 + ABCV34_RS02095 0.53 -2.6 470,833 + ABCV34_RS02095 0.53 -3.1 470,833 + ABCV34_RS02095 0.53 -2.2 470,833 + ABCV34_RS02095 0.53 -2.1 470,833 + ABCV34_RS02095 0.53 -2.4 470,834 - ABCV34_RS02095 0.53 -2.2 470,834 - ABCV34_RS02095 0.53 -2.0 470,863 + ABCV34_RS02095 0.56 -2.3 470,864 - ABCV34_RS02095 0.56 -1.8 470,864 - ABCV34_RS02095 0.56 -1.8 470,918 + ABCV34_RS02095 0.62 -0.5 470,918 + ABCV34_RS02095 0.62 -2.5 470,970 + ABCV34_RS02095 0.67 -2.1 470,971 - ABCV34_RS02095 0.67 -1.8 470,990 - ABCV34_RS02095 0.69 -2.5 471,070 + ABCV34_RS02095 0.77 -3.3 471,097 - ABCV34_RS02095 0.80 -3.1 471,097 - ABCV34_RS02095 0.80 -0.6 471,146 + ABCV34_RS02095 0.85 -3.2 471,146 + ABCV34_RS02095 0.85 -2.8 471,146 + ABCV34_RS02095 0.85 -1.8 471,146 + ABCV34_RS02095 0.85 -2.7 471,146 + ABCV34_RS02095 0.85 -2.8 471,146 + ABCV34_RS02095 0.85 -3.2 471,147 - ABCV34_RS02095 0.85 -2.3 471,147 - ABCV34_RS02095 0.85 -2.4 471,147 - ABCV34_RS02095 0.85 -1.7 471,264 + -2.2 471,265 - -1.9 471,270 + -1.2 471,271 - -1.7 471,271 - -1.5 471,271 - -1.9 471,271 - -2.9 471,271 - -2.1 471,337 + -0.4 471,377 - -2.2 471,421 - -1.9 471,576 + -1.7 471,576 + -2.2 471,576 + -3.3 471,605 + -1.5 471,675 + ABCV34_RS02105 0.15 -2.5 471,675 + ABCV34_RS02105 0.15 -2.3 472,160 + -2.9 472,160 + -1.5 472,283 + -0.8 472,283 + -1.9 472,292 + -1.5
Or see this region's nucleotide sequence